Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre02.g104550 Chlamydomonas reinhardtii HOM05D006687 ORTHO05D008379 2.4e-220 768.8 485 100.0
QL06p001782 Quercus lobata HOM05D006687 ORTHO05D008379 2.7e-38 164.1 494 27.1
Hund10579 Selenicereus undatus HOM05D006687 ORTHO05D008379 6.0e-38 162.9 508 26.4
Mapoly0001s0040 Marchantia polymorpha HOM05D006687 ORTHO05D008379 1.3e-37 161.8 511 27.0
Lalb_Chr05g0211161 Lupinus albus HOM05D006687 ORTHO05D008379 3.0e-37 160.6 482 26.3
CiPaw.01G168400 Carya illinoinensis HOM05D006687 ORTHO05D008379 3.9e-37 160.2 500 27.4
PSO210G5270 Papaver somniferum HOM05D006687 ORTHO05D008379 3.9e-37 160.2 499 27.9
TAR636G0889 Trochodendron aralioides HOM05D006687 ORTHO05D008379 3.9e-37 160.2 498 27.3
PSO761G0513 Papaver somniferum HOM05D006687 ORTHO05D008379 5.1e-37 159.8 499 27.9
LjContig00222g0006058 Lotus japonicus HOM05D006687 ORTHO05D008379 6.7e-37 159.5 490 26.3
SEGI_38182 Sequoiadendron giganteum HOM05D006687 ORTHO05D008379 8.7e-37 159.1 531 26.4
Dinv44552 Davidia involucrata HOM05D006687 ORTHO05D008379 1.9e-36 157.9 496 27.4
Nn1g02367 Nelumbo nucifera HOM05D006687 ORTHO05D008379 1.9e-36 157.9 498 27.1
Psat2g189880 Pisum sativum HOM05D006687 ORTHO05D008379 1.9e-36 157.9 487 26.5
Phvul.002G042300 Phaseolus vulgaris HOM05D006687 ORTHO05D008379 2.5e-36 157.5 490 26.1
VMungo1215G0895 Vigna mungo HOM05D006687 ORTHO05D008379 2.5e-36 157.5 496 25.8
Atru.chr4.2438 Acer truncatum HOM05D006687 ORTHO05D008379 3.3e-36 157.1 504 25.6
Manes.15G030400 Manihot esculenta HOM05D006687 ORTHO05D008379 4.3e-36 156.8 505 26.1
PGR004G1051 Punica granatum HOM05D006687 ORTHO05D008379 5.7e-36 156.4 485 27.6
THA.LOC104808559 Tarenaya hassleriana HOM05D006687 ORTHO05D008379 2.2e-35 154.5 499 26.5
Haze_00870 Corylus avellana HOM05D006687 ORTHO05D008379 2.8e-35 154.1 508 26.2
arahy.Tifrunner.gnm1.ann1.SVC7LK Arachis hypogaea HOM05D006687 ORTHO05D008379 3.7e-35 153.7 505 26.1
Sed0004090 Sechium edule HOM05D006687 ORTHO05D008379 3.7e-35 153.7 495 25.7
unitig_749.g14072 Utricularia gibba HOM05D006687 ORTHO05D008379 3.7e-35 153.7 490 24.5
Actinidia23525 Actinidia chinensis HOM05D006687 ORTHO05D008379 4.8e-35 153.3 489 25.6
Ah.13g071710 Amaranthus hybridus HOM05D006687 ORTHO05D008379 4.8e-35 153.3 503 25.6
CSS0001912 Camellia sinensis var. sinensis HOM05D006687 ORTHO05D008379 6.3e-35 152.9 492 25.6
CAN.G231.10 Capsicum annuum HOM05D006687 ORTHO05D008379 8.2e-35 152.5 483 26.7
MELO3C006520.2 Cucumis melo HOM05D006687 ORTHO05D008379 8.2e-35 152.5 495 26.5
CSS0011956 Camellia sinensis var. sinensis HOM05D006687 ORTHO05D008379 1.1e-34 152.1 492 25.6
ClCG05G005070 Citrullus lanatus HOM05D006687 ORTHO05D008379 1.1e-34 152.1 495 26.5
CsaV3_3G013130 Cucumis sativus L. HOM05D006687 ORTHO05D008379 1.1e-34 152.1 495 26.5
Lj3A732T77 Lonicera japonica HOM05D006687 ORTHO05D008379 1.1e-34 152.1 497 25.4
Medtr5g006960 Medicago truncatula HOM05D006687 ORTHO05D008379 1.1e-34 152.1 484 26.7
arahy.Tifrunner.gnm1.ann1.S3TICT Arachis hypogaea HOM05D006687 ORTHO05D008379 1.4e-34 151.8 504 26.4
CANSAT78G1673 Cannabis sativa HOM05D006687 ORTHO05D008379 2.4e-34 151.0 502 26.7
Aqoxy2G03421 Aquilegia oxysepala HOM05D006687 ORTHO05D008379 3.1e-34 150.6 500 26.8
AUR62034718 Chenopodium quinoa HOM05D006687 ORTHO05D008379 3.1e-34 150.6 506 24.9
CDE05G2168 Ceratophyllum demersum HOM05D006687 ORTHO05D008379 5.3e-34 149.8 506 24.3
Pp3c6_19770 Physcomitrium patens HOM05D006687 ORTHO05D008379 5.3e-34 149.8 515 25.6
MD13G1196100 Malus domestica HOM05D006687 ORTHO05D008379 6.9e-34 149.4 489 26.4
Nitab4.5_0000321g0170 Nicotiana tabacum HOM05D006687 ORTHO05D008379 6.9e-34 149.4 487 25.5
AagrBONN_evm.TU.Sc2ySwM_344.3801 Anthoceros agrestis HOM05D006687 ORTHO05D008379 1.5e-33 148.3 471 26.8
SalBow2G2000 Salvia bowleyana HOM05D006687 ORTHO05D008379 1.5e-33 148.3 484 25.2
Migut.G00354 Erythranthe guttata HOM05D006687 ORTHO05D008379 2.6e-33 147.5 492 26.8
Sed0025649 Sechium edule HOM05D006687 ORTHO05D008379 5.9e-33 146.4 488 25.4
Carub.0003s2274 Capsella rubella HOM05D006687 ORTHO05D008379 1.0e-32 145.6 499 25.3
Hma1.2p1_1572F.1_g291370 Hydrangea macrophylla HOM05D006687 ORTHO05D008379 1.0e-32 145.6 481 27.4
Oeu042805.1 Olea europaea HOM05D006687 ORTHO05D008379 1.0e-32 145.6 486 24.7
TPR.G37926 Trifolium pratense HOM05D006687 ORTHO05D008379 1.0e-32 145.6 490 25.5
AUR62033670 Chenopodium quinoa HOM05D006687 ORTHO05D008379 1.3e-32 145.2 505 24.4
Ca_24424_v3 Cicer arietinum L. HOM05D006687 ORTHO05D008379 1.3e-32 145.2 490 25.9
SGA_v2.0_scaffold191G40505 Striga asiatica HOM05D006687 ORTHO05D008379 1.3e-32 145.2 489 24.5
TWI53G1185 Tripterygium wilfordii HOM05D006687 ORTHO05D008379 1.3e-32 145.2 501 25.1
Lsat_1_v5_gn_6_103081 Lactuca sativa HOM05D006687 ORTHO05D008379 1.7e-32 144.8 497 24.9
HPP92_018620 Vanilla planifolia HOM05D006687 ORTHO05D008379 1.7e-32 144.8 166 42.8
EL10Ac3g06489 Beta vulgaris HOM05D006687 ORTHO05D008379 2.2e-32 144.4 485 24.3
PRCOL_00002517 Prasinoderma coloniale HOM05D006687 ORTHO05D008379 2.2e-32 144.4 496 29.2
Zm00001eb217880 Zea mays HOM05D006687 ORTHO05D008379 2.2e-32 144.4 488 26.0
ECA246G3355 Erigeron canadensis HOM05D006687 ORTHO05D008379 5.0e-32 143.3 493 24.5
FvH4_4g16100 Fragaria vesca HOM05D006687 ORTHO05D008379 8.5e-32 142.5 492 26.8
Ciclev10005124m.g Citrus clementina HOM05D006687 ORTHO05D008379 1.1e-31 142.1 487 25.1
Cpa.g.sc58.86 Carica papaya HOM05D006687 ORTHO05D008379 1.4e-31 141.7 509 25.0
BcaC05g28033 Brassica carinata HOM05D006687 ORTHO05D008379 1.9e-31 141.4 495 25.1
C05p40480 Brassica napus HOM05D006687 ORTHO05D008379 1.9e-31 141.4 495 25.1
BolC5t32790H Brassica oleracea HOM05D006687 ORTHO05D008379 1.9e-31 141.4 495 25.1
PGSC0003DMG400016264 Solanum tuberosum HOM05D006687 ORTHO05D008379 1.9e-31 141.4 487 24.6
Thhalv10020820m.g Eutrema salsugineum HOM05D006687 ORTHO05D008379 3.2e-31 140.6 499 25.1
Solyc06g054080.3 Solanum lycopersicum HOM05D006687 ORTHO05D008379 4.2e-31 140.2 487 24.6
Sopen06g019240 Solanum pennellii HOM05D006687 ORTHO05D008379 4.2e-31 140.2 487 24.6
A05p26080 Brassica napus HOM05D006687 ORTHO05D008379 5.5e-31 139.8 499 24.8
CBR_g48312 Chara braunii HOM05D006687 ORTHO05D008379 7.2e-31 139.4 174 42.0
BraA05t21491Z Brassica rapa HOM05D006687 ORTHO05D008379 9.4e-31 139.0 499 24.8
ATR0665G006 Amborella trichopoda HOM05D006687 ORTHO05D008379 1.2e-30 138.7 499 26.3
CARHR098480 Cardamine hirsuta HOM05D006687 ORTHO05D008379 1.2e-30 138.7 499 25.1
Peaxi162Scf00131g00127 Petunia axillaris HOM05D006687 ORTHO05D008379 2.1e-30 137.9 482 24.9
Sp3g20360 Schrenkiella parvula HOM05D006687 ORTHO05D008379 2.7e-30 137.5 499 25.1
AT3G22590 Arabidopsis thaliana HOM05D006687 ORTHO05D008379 3.6e-30 137.1 499 24.0
Eucgr.H03443 Eucalyptus grandis HOM05D006687 ORTHO05D008379 3.6e-30 137.1 166 41.6
Cc03_g04010 Coffea canephora HOM05D006687 ORTHO05D008379 1.0e-29 135.6 166 40.4
Potri.010G085500 Populus trichocarpa HOM05D006687 ORTHO05D008379 1.0e-29 135.6 168 40.5
Sabra08G0118100 Salix brachista HOM05D006687 ORTHO05D008379 1.0e-29 135.6 168 39.3
BcaB06g26371 Brassica carinata HOM05D006687 ORTHO05D008379 1.4e-29 135.2 504 24.2
Actinidia40137 Actinidia chinensis HOM05D006687 ORTHO05D008379 1.8e-29 134.8 166 39.8
FAN07G2338 Fragaria x ananassa HOM05D006687 ORTHO05D008379 2.3e-29 134.4 168 39.9
FAN22G0081 Fragaria x ananassa HOM05D006687 ORTHO05D008379 2.3e-29 134.4 168 39.9
MD16G1196600 Malus domestica HOM05D006687 ORTHO05D008379 2.3e-29 134.4 168 39.9
Prupe.1G016800 Prunus persica HOM05D006687 ORTHO05D008379 2.3e-29 134.4 168 39.9
RcHm_v2.0_Chr4g0415641 Rosa chinensis HOM05D006687 ORTHO05D008379 2.3e-29 134.4 168 39.9
GSVIVG01018007001 Vitis vinifera HOM05D006687 ORTHO05D008379 2.3e-29 134.4 166 41.0
AL3G36890 Arabidopsis lyrata HOM05D006687 ORTHO05D008379 3.0e-29 134.0 499 24.4
FAN17G0837 Fragaria x ananassa HOM05D006687 ORTHO05D008379 3.0e-29 134.0 168 39.9
Os03g0664700 Oryza sativa ssp. japonica HOM05D006687 ORTHO05D008379 3.0e-29 134.0 172 39.5
Thecc.04G234600 Theobroma cacao HOM05D006687 ORTHO05D008379 3.9e-29 133.7 168 39.9
Duzib052G0918 Durio zibethinus HOM05D006687 ORTHO05D008379 5.1e-29 133.3 168 39.9
Gohir.D02G039900 Gossypium hirsutum HOM05D006687 ORTHO05D008379 5.1e-29 133.3 168 39.9
Gorai.005G044200 Gossypium raimondii HOM05D006687 ORTHO05D008379 5.1e-29 133.3 168 39.9
Rhsim04G0200900 Rhododendron simsii HOM05D006687 ORTHO05D008379 5.1e-29 133.3 166 40.4
Aa31LG8G9120 Aethionema arabicum HOM05D006687 ORTHO05D008379 6.7e-29 132.9 499 25.1
COL.COLO4_21511 Corchorus olitorius HOM05D006687 ORTHO05D008379 8.8e-29 132.5 168 39.3
Hma1.2p1_1572F.1_g291380 Hydrangea macrophylla HOM05D006687 ORTHO05D008379 1.5e-28 131.7 166 39.2
MCO02G458 Micromonas commoda HOM05D006687 ORTHO05D008379 1.5e-28 131.7 181 40.9
Glyma.11G008100 Glycine max HOM05D006687 ORTHO05D008379 2.0e-28 131.3 166 38.6
Gohir.A02G033400 Gossypium hirsutum HOM05D006687 ORTHO05D008379 2.5e-28 131.0 168 39.3
Potri.008G155000 Populus trichocarpa HOM05D006687 ORTHO05D008379 4.3e-28 130.2 168 38.7
Sc13g0004520 Simmondsia chinensis HOM05D006687 ORTHO05D008379 4.3e-28 130.2 494 23.7
DCAR_024171 Daucus carota HOM05D006687 ORTHO05D008379 7.4e-28 129.4 462 25.1
HanXRQChr11g0327791 Helianthus annuus HOM05D006687 ORTHO05D008379 7.4e-28 129.4 167 38.3
FAN12G1590 Fragaria x ananassa HOM05D006687 ORTHO05D008379 3.7e-27 127.1 515 25.4
Hma1.2p1_2201F.1_g317030 Hydrangea macrophylla HOM05D006687 ORTHO05D008379 4.8e-27 126.7 166 38.6
Dinv14009 Davidia involucrata HOM05D006687 ORTHO05D008379 1.4e-15 88.6 101 40.6
Sc13g0006070 Simmondsia chinensis HOM05D006687 ORTHO05D008379 2.5e-15 87.8 426 22.5
TAR365G0539 Trochodendron aralioides HOM05D006687 ORTHO05D008379 4.2e-15 87.0 98 41.8
Rhsim04G0201000 Rhododendron simsii HOM05D001311 ORTHO05D001204 8.5e-08 62.8 95 32.6
Oeu042804.1 Olea europaea HOM05D006687 ORTHO05D008379 1.9e-07 61.6 106 28.3


User provided reference genes

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