Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre02.g095550 Chlamydomonas reinhardtii HOM05D053512 ORTHO05D012763 0.0e+00 18684.9 10627 100.0
Cre02.g095250 Chlamydomonas reinhardtii HOM05D002270 ORTHO05D002866 0.0e+00 15606.0 10218 87.4
Cre02.g095294 Chlamydomonas reinhardtii HOM05D053512 ORTHO05D012763 9.0e-235 821.2 429 98.1
A02p14000 Brassica napus HOM05D002270 ORTHO05D002866 1.3e-47 199.5 1121 24.4
BraA02t06460Z Brassica rapa HOM05D002270 ORTHO05D002866 1.7e-47 199.1 1121 24.4
THA.LOC104807245 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 2.4e-46 195.3 1106 24.2
C02p22490 Brassica napus HOM05D002270 ORTHO05D002866 3.1e-46 194.9 1119 24.8
BolC2t08403H Brassica oleracea HOM05D002270 ORTHO05D002866 5.4e-46 194.1 1119 24.8
AagrBONN_evm.TU.Sc2ySwM_344.4174 Anthoceros agrestis HOM05D002270 ORTHO05D002866 1.3e-44 189.5 1115 25.7
Rhsim08G0236800 Rhododendron simsii HOM05D002270 ORTHO05D002866 1.3e-44 189.5 1071 24.6
Thhalv10017991m.g Eutrema salsugineum HOM05D002270 ORTHO05D002866 1.7e-44 189.1 1114 23.8
THA.LOC104805560 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 8.6e-44 186.8 1114 24.6
Cre03.g161800 Chlamydomonas reinhardtii HOM05D002270 ORTHO05D002866 3.3e-43 184.9 1122 28.7
AL2G25500 Arabidopsis lyrata HOM05D002270 ORTHO05D002866 2.1e-42 182.2 1118 23.8
SGA_v2.0_scaffold71G23844 Striga asiatica HOM05D002270 ORTHO05D002866 2.1e-42 182.2 1077 24.1
Carub.0002s1105 Capsella rubella HOM05D002270 ORTHO05D002866 2.8e-42 181.8 1114 23.5
Mapoly0033s0024 Marchantia polymorpha HOM05D002270 ORTHO05D002866 3.6e-42 181.4 1088 24.1
AT1G67120 Arabidopsis thaliana HOM05D002270 ORTHO05D002866 6.1e-42 180.6 1111 24.3
CAN.G1010.9 Capsicum annuum HOM05D002270 ORTHO05D002866 6.1e-42 180.6 1116 24.7
vmacro22217 Vaccinium macrocarpon HOM05D002270 ORTHO05D002866 1.0e-41 179.9 1098 24.8
Nitab4.5_0000433g0200 Nicotiana tabacum HOM05D002270 ORTHO05D002866 1.4e-41 179.5 1116 24.1
TWI09G1355 Tripterygium wilfordii HOM05D002270 ORTHO05D002866 1.8e-41 179.1 1073 24.1
SalBow6G4013 Salvia bowleyana HOM05D002270 ORTHO05D002866 3.0e-41 178.3 1078 22.9
Sc15g0000370 Simmondsia chinensis HOM05D002270 ORTHO05D002866 3.0e-41 178.3 1062 24.4
Zm00001eb290580 Zea mays HOM05D002270 ORTHO05D002866 3.0e-41 178.3 1063 24.1
CARHR059570 Cardamine hirsuta HOM05D002270 ORTHO05D002866 6.8e-41 177.2 1105 23.1
unitig_22.g5235 Utricularia gibba HOM05D002270 ORTHO05D002866 1.5e-40 176.0 740 26.4
HPP92_008118 Vanilla planifolia HOM05D002270 ORTHO05D002866 2.6e-40 175.3 1068 23.4
Eucgr.J02836 Eucalyptus grandis HOM05D002270 ORTHO05D002866 3.4e-40 174.9 1084 24.0
Pp3c8_22130 Physcomitrium patens HOM05D002270 ORTHO05D002866 3.4e-40 174.9 1152 24.6
Manes.04G142500 Manihot esculenta HOM05D002270 ORTHO05D002866 4.4e-40 174.5 1105 25.4
Carub.0002s1342 Capsella rubella HOM05D002270 ORTHO05D002866 1.7e-39 172.6 1107 23.7
Ciclev10024676m.g Citrus clementina HOM05D002270 ORTHO05D002866 2.2e-39 172.2 1110 23.2
PSO423G0075 Papaver somniferum HOM05D002270 ORTHO05D002866 2.2e-39 172.2 1068 24.3
PGR142G3590 Punica granatum HOM05D002270 ORTHO05D002866 2.2e-39 172.2 1074 24.2
MSTRG.10966 Avicennia marina HOM05D002270 ORTHO05D002866 2.9e-39 171.8 1070 24.7
COL.COLO4_30723 Corchorus olitorius HOM05D002270 ORTHO05D002866 4.9e-39 171.0 1114 23.8
MELO3C024369.2 Cucumis melo HOM05D002270 ORTHO05D002866 4.9e-39 171.0 1108 24.1
Peaxi162Scf00226g00823 Petunia axillaris HOM05D002270 ORTHO05D002866 8.3e-39 170.2 1071 23.1
Migut.H01763 Erythranthe guttata HOM05D002270 ORTHO05D002866 1.1e-38 169.9 1068 24.5
Gohir.A10G056600 Gossypium hirsutum HOM05D002270 ORTHO05D002866 1.8e-38 169.1 1109 23.8
Lsat_1_v5_gn_4_95020 Lactuca sativa HOM05D002270 ORTHO05D002866 1.8e-38 169.1 1072 23.5
PSO144G0138 Papaver somniferum HOM05D002270 ORTHO05D002866 1.8e-38 169.1 1068 24.4
CsaV3_7G034610 Cucumis sativus L. HOM05D002270 ORTHO05D002866 5.4e-38 167.5 1113 23.8
arahy.Tifrunner.gnm1.ann1.3D1K9T Arachis hypogaea HOM05D002270 ORTHO05D002866 1.2e-37 166.4 1069 23.6
CiPaw.01G221300 Carya illinoinensis HOM05D002270 ORTHO05D002866 1.2e-37 166.4 1126 23.6
Atru.chr1.3816 Acer truncatum HOM05D002270 ORTHO05D002866 1.6e-37 166.0 1121 23.7
MCO14G508 Micromonas commoda HOM05D002270 ORTHO05D002866 2.0e-37 165.6 580 30.9
Oeu039944.3 Olea europaea HOM05D002270 ORTHO05D002866 2.0e-37 165.6 1066 23.6
Cfa003549 Carpinus fangiana HOM05D002270 ORTHO05D002866 2.7e-37 165.2 1119 24.0
Ca_23356_v3 Cicer arietinum L. HOM05D002270 ORTHO05D002866 2.7e-37 165.2 1070 24.0
Sed0013702 Sechium edule HOM05D002270 ORTHO05D002866 4.6e-37 164.5 751 26.1
HanXRQChr09g0276661 Helianthus annuus HOM05D002270 ORTHO05D002866 5.9e-37 164.1 1074 23.4
arahy.Tifrunner.gnm1.ann1.B3D1QM Arachis hypogaea HOM05D002270 ORTHO05D002866 1.3e-36 162.9 1068 23.8
QL05p009063 Quercus lobata HOM05D002270 ORTHO05D002866 1.7e-36 162.5 1119 23.5
Potri.017G039100 Populus trichocarpa HOM05D002270 ORTHO05D002866 3.0e-36 161.8 1077 22.9
ClCG09G000860 Citrullus lanatus HOM05D002270 ORTHO05D002866 3.9e-36 161.4 1124 23.1
Aqoxy7G03985 Aquilegia oxysepala HOM05D002270 ORTHO05D002866 6.6e-36 160.6 1079 23.3
Glyma.16G004800 Glycine max HOM05D002270 ORTHO05D002866 8.6e-36 160.2 1085 23.7
Sabra17G0026200 Salix brachista HOM05D002270 ORTHO05D002866 1.1e-35 159.8 1080 23.0
Actinidia32171 Actinidia chinensis HOM05D002270 ORTHO05D002866 2.5e-35 158.7 1079 24.1
Haze_16005 Corylus avellana HOM05D002270 ORTHO05D002866 7.3e-35 157.1 1125 24.1
CANSAT56G0650 Cannabis sativa HOM05D002270 ORTHO05D002866 9.5e-35 156.8 1066 24.5
Lj5C40G12 Lonicera japonica HOM05D002270 ORTHO05D002866 9.5e-35 156.8 1070 24.1
Glyma.07G035600 Glycine max HOM05D002270 ORTHO05D002866 1.2e-34 156.4 1070 23.0
TAR636G1846 Trochodendron aralioides HOM05D002270 ORTHO05D002866 1.2e-34 156.4 738 25.2
CSS0023775 Camellia sinensis var. sinensis HOM05D002270 ORTHO05D002866 1.1e-33 153.3 766 25.3
Cc04_g01520 Coffea canephora HOM05D002270 ORTHO05D002866 1.8e-33 152.5 739 25.0
TPR.G9777 Trifolium pratense HOM05D002270 ORTHO05D002866 1.8e-33 152.5 1092 23.4
AUR62001507 Chenopodium quinoa HOM05D002270 ORTHO05D002866 3.1e-33 151.8 1082 22.9
Nn8g38745 Nelumbo nucifera HOM05D002270 ORTHO05D002866 3.1e-33 151.8 1069 23.5
EL10Ac7g16387 Beta vulgaris HOM05D002270 ORTHO05D002866 4.0e-33 151.4 1059 23.8
Prupe.3G044200 Prunus persica HOM05D002270 ORTHO05D002866 4.0e-33 151.4 743 25.3
Thecc.06G117100 Theobroma cacao HOM05D002270 ORTHO05D002866 5.2e-33 151.0 1124 22.8
Duzib235G1111 Durio zibethinus HOM05D002270 ORTHO05D002866 6.8e-33 150.6 791 24.3
MD05G1009600 Malus domestica HOM05D002270 ORTHO05D002866 6.8e-33 150.6 1070 23.4
VMungo0464G0518 Vigna mungo HOM05D002270 ORTHO05D002866 2.0e-32 149.1 1076 22.9
TPR.G29949 Trifolium pratense HOM05D002270 ORTHO05D002866 1.3e-31 146.4 756 25.1
Gorai.011G062600 Gossypium raimondii HOM05D002270 ORTHO05D002866 4.9e-31 144.4 561 27.1
FvH4_6g34300 Fragaria vesca HOM05D002270 ORTHO05D002866 1.9e-30 142.5 557 26.4
AUR62009863 Chenopodium quinoa HOM05D002270 ORTHO05D002866 5.4e-30 141.0 1117 22.8
Rhsim07G0217300 Rhododendron simsii HOM05D002270 ORTHO05D002866 2.0e-29 139.0 1032 23.8
Lalb_Chr20g0113911 Lupinus albus HOM05D002270 ORTHO05D002866 6.0e-29 137.5 235 37.4
Gohir.D10G058500 Gossypium hirsutum HOM05D002270 ORTHO05D002866 7.8e-29 137.1 235 35.3
GSVIVG01016794001 Vitis vinifera HOM05D002270 ORTHO05D002866 1.0e-28 136.7 235 36.2
Psat4g180280 Pisum sativum HOM05D002270 ORTHO05D002866 1.3e-28 136.3 576 26.7
COL.COLO4_12568 Corchorus olitorius HOM05D002270 ORTHO05D002866 1.5e-27 132.9 564 26.6
Lj3g0006373 Lotus japonicus HOM05D002270 ORTHO05D002866 2.5e-27 132.1 1093 23.0
PRCOL_00003697 Prasinoderma coloniale HOM05D002270 ORTHO05D002866 1.6e-26 129.4 861 24.2
RcHm_v2.0_Chr2g0144641 Rosa chinensis HOM05D002270 ORTHO05D002866 1.6e-26 129.4 1137 23.7
VMungo0331G1298 Vigna mungo HOM05D002270 ORTHO05D002866 1.6e-26 129.4 235 35.3
Atru.chr1.3813 Acer truncatum HOM05D002270 ORTHO05D002866 1.1e-25 126.7 577 25.8
Phvul.010G134100 Phaseolus vulgaris HOM05D002270 ORTHO05D002866 1.8e-25 125.9 1130 23.1
Hund05750 Selenicereus undatus HOM05D002270 ORTHO05D002866 2.6e-24 122.1 236 34.3
ECA232G4141 Erigeron canadensis HOM05D002270 ORTHO05D002866 5.8e-24 120.9 496 27.4
Solyc04g072260.3 Solanum lycopersicum HOM05D002270 ORTHO05D002866 7.5e-24 120.6 1119 23.1
Sopen04g028450 Solanum pennellii HOM05D002270 ORTHO05D002866 7.5e-24 120.6 1125 22.3
Cpa.g.sc30.10 Carica papaya HOM05D002270 ORTHO05D002866 1.9e-22 115.9 745 23.0
SMO141G0091 Selaginella moellendorffii HOM05D002270 ORTHO05D002866 3.2e-22 115.2 536 27.8
Medtr8g018890 Medicago truncatula HOM05D002270 ORTHO05D002866 5.4e-22 114.4 1103 22.2
BolC2t08408H Brassica oleracea HOM05D002270 ORTHO05D002866 7.1e-22 114.0 172 39.5
Oeu047969.1 Olea europaea HOM05D002270 ORTHO05D002866 1.2e-21 113.2 235 32.3
CBR_g742 Chara braunii HOM05D002270 ORTHO05D002866 2.1e-21 112.5 443 28.2
Dinv37885 Davidia involucrata HOM05D002270 ORTHO05D002866 7.8e-21 110.5 561 25.3
arahy.Tifrunner.gnm1.ann1.VXKY2I Arachis hypogaea HOM05D002270 ORTHO05D002866 3.0e-20 108.6 568 24.5
Ah.08g216540 Amaranthus hybridus HOM05D002270 ORTHO05D002866 5.1e-20 107.8 253 33.6
FAN02G3927 Fragaria x ananassa HOM05D002270 ORTHO05D002866 8.6e-20 107.1 164 41.5
FAN14G4121 Fragaria x ananassa HOM05D002270 ORTHO05D002866 8.6e-20 107.1 164 41.5
Lsat_1_v5_gn_7_1960 Lactuca sativa HOM05D002270 ORTHO05D002866 1.1e-19 106.7 194 37.1
Hund05751 Selenicereus undatus HOM05D002270 ORTHO05D002866 2.5e-19 105.5 194 37.6
arahy.Tifrunner.gnm1.ann1.I4EX6M Arachis hypogaea HOM05D002270 ORTHO05D002866 3.3e-19 105.1 167 38.9
ATR0736G169 Amborella trichopoda HOM05D002270 ORTHO05D002866 4.3e-19 104.8 475 26.7
CDE12G0416 Ceratophyllum demersum HOM05D002270 ORTHO05D002866 4.3e-19 104.8 167 38.9
FAN05G0510 Fragaria x ananassa HOM05D002270 ORTHO05D002866 5.6e-19 104.4 164 40.2
TPR.G29953 Trifolium pratense HOM05D002270 ORTHO05D002866 5.6e-19 104.4 191 36.6
TAR636G1163 Trochodendron aralioides HOM05D002270 ORTHO05D002866 7.3e-19 104.0 194 37.6
C02p22540 Brassica napus HOM05D002270 ORTHO05D002866 9.5e-19 103.6 242 33.9
Lalb_Chr20g0113901 Lupinus albus HOM05D002270 ORTHO05D002866 1.6e-18 102.8 535 26.4
Nitab4.5_0003025g0040 Nicotiana tabacum HOM05D002270 ORTHO05D002866 2.1e-18 102.4 728 23.8
ATR0736G011 Amborella trichopoda HOM05D002270 ORTHO05D002866 8.1e-18 100.5 178 38.2
Cpa.g.sc30.12 Carica papaya HOM05D002270 ORTHO05D002866 1.8e-17 99.4 473 27.5
SEGI_27232 Sequoiadendron giganteum HOM05D002270 ORTHO05D000001 1.8e-17 99.4 608 26.3
SEGI_24765 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 2.4e-17 99.0 465 27.1
Pp3c18_13680 Physcomitrium patens HOM05D010515 ORTHO05D012763 4.0e-17 98.2 147 41.5
Aa31LG2G3520 Aethionema arabicum HOM05D002270 ORTHO05D002866 8.9e-17 97.1 1050 22.0
DCAR_014031 Daucus carota HOM05D002270 ORTHO05D002866 2.6e-16 95.5 177 34.5
Pp3c4_16470 Physcomitrium patens HOM05D010515 ORTHO05D012763 4.4e-16 94.7 202 38.1
CBR_g741 Chara braunii HOM05D002270 ORTHO05D002866 7.6e-16 94.0 531 26.4
AagrBONN_evm.TU.Sc2ySwM_228.1321 Anthoceros agrestis HOM05D010515 ORTHO05D012763 5.4e-14 87.8 190 34.2
SHI16813 Sapria himalayana HOM05D002270 ORTHO05D002866 5.4e-14 87.8 749 23.2
AagrBONN_evm.TU.Sc2ySwM_228.1326 Anthoceros agrestis HOM05D010515 ORTHO05D012763 2.7e-13 85.5 188 32.4
AagrBONN_evm.TU.Sc2ySwM_228.1182 Anthoceros agrestis HOM05D010515 ORTHO05D012763 4.6e-13 84.7 156 39.7
AagrBONN_evm.TU.Sc2ySwM_228.1323 Anthoceros agrestis HOM05D010515 ORTHO05D012763 1.3e-12 83.2 193 33.2
VMungo0331G1745 Vigna mungo HOM05D000103 ORTHO05D000049 1.3e-12 83.2 750 22.8
Mapoly0067s0045 Marchantia polymorpha HOM05D010515 ORTHO05D012763 3.9e-12 81.6 195 31.8
CDE12G0087 Ceratophyllum demersum HOM05D002270 ORTHO05D002866 3.6e-10 75.1 104 39.4
TPR.G36181 Trifolium pratense HOM05D002270 ORTHO05D002866 1.1e-09 73.6 248 26.6
SEGI_12162 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 2.4e-09 72.4 164 33.5
vmacro22219 Vaccinium macrocarpon HOM05D002270 ORTHO05D002866 6.9e-09 70.9 487 23.0
SHI16815 Sapria himalayana HOM05D002270 ORTHO05D002866 3.4e-08 68.6 200 28.5
ECA232G3855 Erigeron canadensis HOM05D002270 ORTHO05D002866 4.4e-08 68.2 128 34.4
TAR371G0164 Trochodendron aralioides HOM05D002270 ORTHO05D002866 4.9e-07 64.7 75 44.0
SHI16816 Sapria himalayana HOM05D002270 ORTHO05D002866 8.4e-07 63.9 100 38.0
Sp5g22070 Schrenkiella parvula HOM05D002270 ORTHO05D002866 1.1e-06 63.5 176 28.4
VMungo1383G2297 Vigna mungo HOM05D002270 ORTHO05D002866 1.1e-06 63.5 243 24.3
PRCOL_00001999 Prasinoderma coloniale HOM05D005521 ORTHO05D008962 1.4e-06 63.2 190 28.4
Sp5g22060 Schrenkiella parvula HOM05D002270 ORTHO05D002866 2.4e-06 62.4 186 25.8


User provided reference genes

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