Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre02.g095250 Chlamydomonas reinhardtii HOM05D002270 ORTHO05D002866 0.0e+00 17979.6 10071 100.0
Cre02.g095550 Chlamydomonas reinhardtii HOM05D053512 ORTHO05D012763 0.0e+00 15566.3 10218 87.4
THA.LOC104807245 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 8.7e-46 193.4 1106 24.7
A02p14000 Brassica napus HOM05D002270 ORTHO05D002866 4.3e-45 191.0 1119 24.4
BraA02t06460Z Brassica rapa HOM05D002270 ORTHO05D002866 4.3e-45 191.0 1119 24.4
C02p22490 Brassica napus HOM05D002270 ORTHO05D002866 5.6e-45 190.7 1119 24.4
BolC2t08403H Brassica oleracea HOM05D002270 ORTHO05D002866 9.6e-45 189.9 1119 24.4
Carub.0002s1105 Capsella rubella HOM05D002270 ORTHO05D002866 2.8e-44 188.3 1097 24.2
Thhalv10017991m.g Eutrema salsugineum HOM05D002270 ORTHO05D002866 1.8e-43 185.7 1117 23.9
Rhsim08G0236800 Rhododendron simsii HOM05D002270 ORTHO05D002866 5.3e-43 184.1 1063 25.1
THA.LOC104805560 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 9.0e-43 183.3 1108 24.4
AagrBONN_evm.TU.Sc2ySwM_344.4174 Anthoceros agrestis HOM05D002270 ORTHO05D002866 9.9e-42 179.9 1121 25.4
Lj3g0006373 Lotus japonicus HOM05D002270 ORTHO05D002866 1.9e-40 175.6 1071 23.9
Zm00001eb290580 Zea mays HOM05D002270 ORTHO05D002866 2.4e-40 175.3 1062 24.2
vmacro22217 Vaccinium macrocarpon HOM05D002270 ORTHO05D002866 5.4e-40 174.1 1095 24.7
Pp3c8_22130 Physcomitrium patens HOM05D002270 ORTHO05D002866 7.1e-40 173.7 1066 24.5
Mapoly0033s0024 Marchantia polymorpha HOM05D002270 ORTHO05D002866 9.3e-40 173.3 1090 24.3
SGA_v2.0_scaffold71G23844 Striga asiatica HOM05D002270 ORTHO05D002866 9.3e-40 173.3 1070 24.1
CARHR059570 Cardamine hirsuta HOM05D002270 ORTHO05D002866 1.6e-39 172.6 1102 23.0
Sc15g0000370 Simmondsia chinensis HOM05D002270 ORTHO05D002866 2.1e-39 172.2 1062 24.7
Sopen04g028450 Solanum pennellii HOM05D002270 ORTHO05D002866 2.7e-39 171.8 1076 24.3
HanXRQChr09g0276661 Helianthus annuus HOM05D002270 ORTHO05D002866 3.5e-39 171.4 1065 24.1
Solyc04g072260.3 Solanum lycopersicum HOM05D002270 ORTHO05D002866 6.0e-39 170.6 1076 24.3
COL.COLO4_30723 Corchorus olitorius HOM05D002270 ORTHO05D002866 7.9e-39 170.2 1113 23.6
Manes.04G142500 Manihot esculenta HOM05D002270 ORTHO05D002866 7.9e-39 170.2 1105 24.7
HPP92_008118 Vanilla planifolia HOM05D002270 ORTHO05D002866 7.9e-39 170.2 1074 24.1
PSO423G0075 Papaver somniferum HOM05D002270 ORTHO05D002866 1.3e-38 169.5 1087 23.4
CAN.G1010.9 Capsicum annuum HOM05D002270 ORTHO05D002866 1.8e-38 169.1 1075 23.8
MELO3C024369.2 Cucumis melo HOM05D002270 ORTHO05D002866 3.0e-38 168.3 1109 24.0
arahy.Tifrunner.gnm1.ann1.3D1K9T Arachis hypogaea HOM05D002270 ORTHO05D002866 5.1e-38 167.5 1074 23.2
Nitab4.5_0000433g0200 Nicotiana tabacum HOM05D002270 ORTHO05D002866 5.1e-38 167.5 1073 23.6
SalBow6G4013 Salvia bowleyana HOM05D002270 ORTHO05D002866 5.1e-38 167.5 1084 23.2
Migut.H01763 Erythranthe guttata HOM05D002270 ORTHO05D002866 6.7e-38 167.2 1065 24.1
Eucgr.J02836 Eucalyptus grandis HOM05D002270 ORTHO05D002866 6.7e-38 167.2 1075 23.4
CsaV3_7G034610 Cucumis sativus L. HOM05D002270 ORTHO05D002866 1.5e-37 166.0 1114 23.8
arahy.Tifrunner.gnm1.ann1.B3D1QM Arachis hypogaea HOM05D002270 ORTHO05D002866 1.9e-37 165.6 1074 23.4
MSTRG.10966 Avicennia marina HOM05D002270 ORTHO05D002866 3.3e-37 164.9 1066 24.7
ClCG09G000860 Citrullus lanatus HOM05D002270 ORTHO05D002866 3.3e-37 164.9 1124 23.5
unitig_22.g5235 Utricularia gibba HOM05D002270 ORTHO05D002866 3.3e-37 164.9 785 26.5
Aqoxy7G03985 Aquilegia oxysepala HOM05D002270 ORTHO05D002866 9.6e-37 163.3 1070 23.5
Sed0013702 Sechium edule HOM05D002270 ORTHO05D002866 9.6e-37 163.3 1072 24.3
Ciclev10024676m.g Citrus clementina HOM05D002270 ORTHO05D002866 1.3e-36 162.9 784 24.2
Cfa003549 Carpinus fangiana HOM05D002270 ORTHO05D002866 1.6e-36 162.5 1121 24.3
TWI09G1355 Tripterygium wilfordii HOM05D002270 ORTHO05D002866 1.6e-36 162.5 1076 23.3
Oeu039944.3 Olea europaea HOM05D002270 ORTHO05D002866 2.1e-36 162.2 1061 23.4
Psat4g180280 Pisum sativum HOM05D002270 ORTHO05D002866 2.1e-36 162.2 1073 24.2
Lsat_1_v5_gn_4_95020 Lactuca sativa HOM05D002270 ORTHO05D002866 2.8e-36 161.8 1075 23.3
Peaxi162Scf00226g00823 Petunia axillaris HOM05D002270 ORTHO05D002866 3.7e-36 161.4 1082 23.4
PSO144G0138 Papaver somniferum HOM05D002270 ORTHO05D002866 6.2e-36 160.6 1068 23.5
RcHm_v2.0_Chr2g0144641 Rosa chinensis HOM05D002270 ORTHO05D002866 8.1e-36 160.2 1077 23.8
CANSAT56G0650 Cannabis sativa HOM05D002270 ORTHO05D002866 1.8e-35 159.1 1062 24.9
CiPaw.01G221300 Carya illinoinensis HOM05D002270 ORTHO05D002866 1.8e-35 159.1 1122 23.3
Ca_23356_v3 Cicer arietinum L. HOM05D002270 ORTHO05D002866 1.8e-35 159.1 1069 24.4
Glyma.16G004800 Glycine max HOM05D002270 ORTHO05D002866 1.8e-35 159.1 1083 23.3
QL05p009063 Quercus lobata HOM05D002270 ORTHO05D002866 1.2e-34 156.4 1115 24.1
MCO14G508 Micromonas commoda HOM05D002270 ORTHO05D002866 2.6e-34 155.2 515 31.3
PGR142G3590 Punica granatum HOM05D002270 ORTHO05D002866 2.6e-34 155.2 1075 23.2
Nn8g38745 Nelumbo nucifera HOM05D002270 ORTHO05D002866 3.4e-34 154.8 1070 23.6
Thecc.06G117100 Theobroma cacao HOM05D002270 ORTHO05D002866 3.4e-34 154.8 1121 22.8
MD05G1009600 Malus domestica HOM05D002270 ORTHO05D002866 7.6e-34 153.7 1070 24.1
Haze_16005 Corylus avellana HOM05D002270 ORTHO05D002866 1.0e-33 153.3 1132 23.6
Actinidia32171 Actinidia chinensis HOM05D002270 ORTHO05D002866 1.3e-33 152.9 1075 23.3
AL2G25500 Arabidopsis lyrata HOM05D002270 ORTHO05D002866 1.7e-33 152.5 573 26.4
AT1G67120 Arabidopsis thaliana HOM05D002270 ORTHO05D002866 1.7e-33 152.5 577 26.9
TPR.G9777 Trifolium pratense HOM05D002270 ORTHO05D002866 2.2e-33 152.1 1080 23.2
VMungo0464G0518 Vigna mungo HOM05D002270 ORTHO05D002866 2.9e-33 151.8 1072 23.3
CSS0023775 Camellia sinensis var. sinensis HOM05D002270 ORTHO05D002866 3.8e-33 151.4 770 24.7
Glyma.07G035600 Glycine max HOM05D002270 ORTHO05D002866 3.8e-33 151.4 1069 22.6
TAR636G1846 Trochodendron aralioides HOM05D002270 ORTHO05D002866 4.9e-33 151.0 737 25.0
Lj5C40G12 Lonicera japonica HOM05D002270 ORTHO05D002866 8.4e-33 150.2 1072 24.2
Atru.chr1.3816 Acer truncatum HOM05D002270 ORTHO05D002866 1.1e-32 149.8 1113 23.0
AUR62001507 Chenopodium quinoa HOM05D002270 ORTHO05D002866 1.1e-32 149.8 1069 22.4
Carub.0002s1342 Capsella rubella HOM05D002270 ORTHO05D002866 1.4e-32 149.4 564 27.1
Prupe.3G044200 Prunus persica HOM05D002270 ORTHO05D002866 2.5e-32 148.7 738 24.5
Duzib235G1111 Durio zibethinus HOM05D002270 ORTHO05D002866 7.1e-32 147.1 788 24.2
Cc04_g01520 Coffea canephora HOM05D002270 ORTHO05D002866 1.6e-31 146.0 739 24.9
AUR62009863 Chenopodium quinoa HOM05D002270 ORTHO05D002866 2.1e-31 145.6 1113 22.9
Atru.chr1.3813 Acer truncatum HOM05D002270 ORTHO05D002866 3.5e-31 144.8 1114 23.0
Gorai.011G062600 Gossypium raimondii HOM05D002270 ORTHO05D002866 3.0e-30 141.7 560 26.2
Medtr8g018890 Medicago truncatula HOM05D002270 ORTHO05D002866 5.1e-30 141.0 591 26.2
FvH4_6g34300 Fragaria vesca HOM05D002270 ORTHO05D002866 6.7e-30 140.6 556 26.4
TPR.G29949 Trifolium pratense HOM05D002270 ORTHO05D002866 6.7e-30 140.6 761 24.8
Gohir.A10G056600 Gossypium hirsutum HOM05D002270 ORTHO05D002866 1.1e-29 139.8 558 26.5
Lalb_Chr20g0113911 Lupinus albus HOM05D002270 ORTHO05D002866 8.2e-28 133.7 234 36.8
GSVIVG01016794001 Vitis vinifera HOM05D002270 ORTHO05D002866 2.4e-27 132.1 234 35.5
Gohir.D10G058500 Gossypium hirsutum HOM05D002270 ORTHO05D002866 3.1e-27 131.7 234 34.6
Phvul.010G134100 Phaseolus vulgaris HOM05D002270 ORTHO05D002866 5.3e-27 131.0 566 26.1
Potri.017G039100 Populus trichocarpa HOM05D002270 ORTHO05D002866 1.5e-26 129.4 568 25.0
SEGI_24765 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 1.5e-26 129.4 565 27.3
COL.COLO4_12568 Corchorus olitorius HOM05D002270 ORTHO05D002866 2.0e-26 129.0 564 26.8
ECA232G4141 Erigeron canadensis HOM05D002270 ORTHO05D002866 2.0e-26 129.0 495 27.5
Rhsim07G0217300 Rhododendron simsii HOM05D002270 ORTHO05D002866 3.4e-26 128.3 528 27.5
VMungo0331G1298 Vigna mungo HOM05D002270 ORTHO05D002866 1.3e-25 126.3 234 35.0
ATR0736G011 Amborella trichopoda HOM05D002270 ORTHO05D002866 2.2e-25 125.6 232 35.3
EL10Ac7g16387 Beta vulgaris HOM05D002270 ORTHO05D002866 2.2e-25 125.6 557 26.4
PRCOL_00003697 Prasinoderma coloniale HOM05D002270 ORTHO05D002866 5.0e-25 124.4 857 24.4
Sabra17G0026200 Salix brachista HOM05D002270 ORTHO05D002866 1.4e-24 122.9 569 25.0
Hund05750 Selenicereus undatus HOM05D002270 ORTHO05D002866 9.3e-24 120.2 237 34.2
Ah.08g216540 Amaranthus hybridus HOM05D002270 ORTHO05D002866 2.3e-22 115.5 742 23.3
CBR_g742 Chara braunii HOM05D002270 ORTHO05D002866 3.0e-22 115.2 447 28.4
Hund05751 Selenicereus undatus HOM05D002270 ORTHO05D002866 3.9e-22 114.8 738 23.3
arahy.Tifrunner.gnm1.ann1.VXKY2I Arachis hypogaea HOM05D002270 ORTHO05D002866 1.9e-21 112.5 569 24.1
Oeu047969.1 Olea europaea HOM05D002270 ORTHO05D002866 3.3e-21 111.7 234 32.5
Cpa.g.sc30.10 Carica papaya HOM05D002270 ORTHO05D002866 5.7e-21 110.9 745 23.2
Dinv37885 Davidia involucrata HOM05D002270 ORTHO05D002866 1.6e-20 109.4 560 25.4
Nitab4.5_0003025g0040 Nicotiana tabacum HOM05D002270 ORTHO05D002866 1.8e-19 105.9 723 23.2
Cre03.g161800 Chlamydomonas reinhardtii HOM05D002270 ORTHO05D002866 3.1e-19 105.1 3432 22.0
SHI16813 Sapria himalayana HOM05D002270 ORTHO05D002866 9.0e-19 103.6 302 32.5
FAN14G4121 Fragaria x ananassa HOM05D002270 ORTHO05D002866 5.9e-18 100.9 559 24.2
Aa31LG2G3520 Aethionema arabicum HOM05D002270 ORTHO05D002866 2.9e-17 98.6 461 26.5
ATR0736G169 Amborella trichopoda HOM05D002270 ORTHO05D002866 5.0e-17 97.8 191 34.6
Lalb_Chr20g0113901 Lupinus albus HOM05D002270 ORTHO05D002866 6.5e-17 97.4 164 36.6
FAN02G3927 Fragaria x ananassa HOM05D002270 ORTHO05D002866 1.4e-16 96.3 559 23.8
Lsat_1_v5_gn_7_1960 Lactuca sativa HOM05D002270 ORTHO05D002866 1.4e-16 96.3 234 32.1
FAN05G0510 Fragaria x ananassa HOM05D002270 ORTHO05D002866 1.9e-16 95.9 304 30.3
TAR636G1163 Trochodendron aralioides HOM05D002270 ORTHO05D002866 1.9e-16 95.9 157 35.7
arahy.Tifrunner.gnm1.ann1.I4EX6M Arachis hypogaea HOM05D002270 ORTHO05D002866 4.2e-16 94.7 319 27.6
CDE12G0416 Ceratophyllum demersum HOM05D002270 ORTHO05D002866 7.2e-16 94.0 172 34.9
DCAR_014031 Daucus carota HOM05D002270 ORTHO05D002866 1.6e-15 92.8 177 34.5
SMO141G0091 Selaginella moellendorffii HOM05D002270 ORTHO05D002866 1.0e-14 90.1 170 35.3
SEGI_27232 Sequoiadendron giganteum HOM05D002270 ORTHO05D000001 1.8e-14 89.4 170 37.6
BolC2t08408H Brassica oleracea HOM05D002270 ORTHO05D002866 3.9e-14 88.2 218 30.7
Cpa.g.sc30.12 Carica papaya HOM05D002270 ORTHO05D002866 1.1e-13 86.7 281 28.5
CBR_g741 Chara braunii HOM05D002270 ORTHO05D002866 9.7e-13 83.6 533 26.3
C02p22540 Brassica napus HOM05D002270 ORTHO05D002866 4.1e-11 78.2 222 30.2
CDE12G0087 Ceratophyllum demersum HOM05D002270 ORTHO05D002866 7.7e-10 73.9 101 39.6
VMungo0331G1745 Vigna mungo HOM05D000103 ORTHO05D000049 1.0e-09 73.6 749 21.9
SEGI_12162 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 3.8e-09 71.6 97 43.3
vmacro22219 Vaccinium macrocarpon HOM05D002270 ORTHO05D002866 5.0e-09 71.2 471 23.4
TPR.G36181 Trifolium pratense HOM05D002270 ORTHO05D002866 8.5e-09 70.5 266 27.4
ECA232G3855 Erigeron canadensis HOM05D002270 ORTHO05D002866 5.5e-08 67.8 126 34.9
SHI16816 Sapria himalayana HOM05D002270 ORTHO05D002866 9.4e-08 67.0 384 25.0
PRCOL_00001999 Prasinoderma coloniale HOM05D005521 ORTHO05D008962 1.6e-07 66.2 190 28.4
SHI16815 Sapria himalayana HOM05D002270 ORTHO05D002866 1.6e-07 66.2 200 28.0
TAR371G0164 Trochodendron aralioides HOM05D002270 ORTHO05D002866 6.1e-07 64.3 75 44.0
Sp5g22070 Schrenkiella parvula HOM05D002270 ORTHO05D002866 7.9e-07 63.9 176 29.0
VMungo1383G2297 Vigna mungo HOM05D002270 ORTHO05D002866 1.0e-06 63.5 161 31.1
TPR.G29953 Trifolium pratense HOM05D002270 ORTHO05D002866 3.9e-06 61.6 371 23.2


User provided reference genes

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