Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre02.g077451 Chlamydomonas reinhardtii HOM05D002306 ORTHO05D005773 8.4e-288 993.0 521 100.0
Cre11.g481250 Chlamydomonas reinhardtii HOM05D002306 ORTHO05D005773 4.8e-41 173.3 380 34.5
HanXRQChr04g0100471 Helianthus annuus HOM05D002306 ORTHO05D005773 3.4e-39 167.2 302 35.8
HPP92_010499 Vanilla planifolia HOM05D002306 ORTHO05D005773 2.2e-38 164.5 319 33.9
SMO147G0069 Selaginella moellendorffii HOM05D002306 ORTHO05D005773 5.0e-38 163.3 292 33.9
CsaV3_5G000460 Cucumis sativus L. HOM05D002306 ORTHO05D005773 8.5e-38 162.5 316 34.2
CiPaw.05G198100 Carya illinoinensis HOM05D002306 ORTHO05D005773 1.4e-37 161.8 314 33.8
PGSC0003DMG401018530 Solanum tuberosum HOM05D002306 ORTHO05D005773 1.4e-37 161.8 311 32.5
Hund21009 Selenicereus undatus HOM05D002306 ORTHO05D005773 1.9e-37 161.4 311 34.1
CAN.G481.26 Capsicum annuum HOM05D002306 ORTHO05D005773 2.5e-37 161.0 312 34.0
PGR042G0827 Punica granatum HOM05D002306 ORTHO05D005773 2.5e-37 161.0 323 33.7
BcaB08g35665 Brassica carinata HOM05D002306 ORTHO05D005773 3.2e-37 160.6 311 33.8
unitig_748.g7291 Utricularia gibba HOM05D002306 ORTHO05D005773 4.2e-37 160.2 313 33.9
BcaC01g06217 Brassica carinata HOM05D002306 ORTHO05D005773 5.5e-37 159.8 314 33.4
C03p18010 Brassica napus HOM05D002306 ORTHO05D005773 5.5e-37 159.8 314 33.4
BolC3t14206H Brassica oleracea HOM05D002306 ORTHO05D005773 5.5e-37 159.8 314 33.4
ClCG01G000390 Citrullus lanatus HOM05D002306 ORTHO05D005773 5.5e-37 159.8 316 34.2
Glyma.14G162400 Glycine max HOM05D002306 ORTHO05D005773 5.5e-37 159.8 313 32.9
Phvul.001G075000 Phaseolus vulgaris HOM05D002306 ORTHO05D005773 5.5e-37 159.8 311 34.1
A10p10540 Brassica napus HOM05D002306 ORTHO05D005773 7.2e-37 159.5 316 32.9
CSS0036676 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D005773 7.2e-37 159.5 322 32.6
AUR62019412 Chenopodium quinoa HOM05D002306 ORTHO05D005773 7.2e-37 159.5 313 33.9
Manes.01G185000 Manihot esculenta HOM05D002306 ORTHO05D005773 7.2e-37 159.5 318 33.0
PGR142G2770 Punica granatum HOM05D002306 ORTHO05D005773 7.2e-37 159.5 318 33.0
CiPaw.06G045200 Carya illinoinensis HOM05D002306 ORTHO05D005773 9.4e-37 159.1 314 33.1
MELO3C005890.2 Cucumis melo HOM05D002306 ORTHO05D005773 9.4e-37 159.1 316 33.2
Migut.F00200 Erythranthe guttata HOM05D002306 ORTHO05D005773 9.4e-37 159.1 317 32.8
arahy.Tifrunner.gnm1.ann1.4T5RFS Arachis hypogaea HOM05D002306 ORTHO05D005773 1.2e-36 158.7 310 32.9
AUR62006082 Chenopodium quinoa HOM05D002306 ORTHO05D005773 1.2e-36 158.7 319 34.5
Sopen03g022820 Solanum pennellii HOM05D002306 ORTHO05D005773 1.2e-36 158.7 311 31.8
Peaxi162Scf00740g00143 Petunia axillaris HOM05D002306 ORTHO05D005773 1.6e-36 158.3 315 32.7
SalBow4G3229 Salvia bowleyana HOM05D002306 ORTHO05D005773 1.6e-36 158.3 317 32.5
arahy.Tifrunner.gnm1.ann1.FPLI9C Arachis hypogaea HOM05D002306 ORTHO05D005773 2.1e-36 157.9 310 32.9
Solyc03g083010.3 Solanum lycopersicum HOM05D002306 ORTHO05D005773 2.1e-36 157.9 311 31.8
Thhalv10013609m.g Eutrema salsugineum HOM05D002306 ORTHO05D005773 2.7e-36 157.5 312 34.3
Potri.012G017100 Populus trichocarpa HOM05D002306 ORTHO05D005773 2.7e-36 157.5 319 32.6
Lj1g0011159 Lotus japonicus HOM05D002306 ORTHO05D005773 3.6e-36 157.1 314 33.8
Sed0011455 Sechium edule HOM05D002306 ORTHO05D005773 3.6e-36 157.1 320 33.1
EL10Ac3g05271 Beta vulgaris HOM05D002306 ORTHO05D005773 4.7e-36 156.8 311 32.5
Eucgr.A01449 Eucalyptus grandis HOM05D002306 ORTHO05D005773 4.7e-36 156.8 308 34.1
RcHm_v2.0_Chr1g0381481 Rosa chinensis HOM05D002306 ORTHO05D005773 4.7e-36 156.8 331 32.9
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 4.7e-36 156.8 269 35.3
AagrBONN_evm.TU.Sc2ySwM_228.3658 Anthoceros agrestis HOM05D002306 ORTHO05D005773 6.1e-36 156.4 323 34.4
BcaB01g04217 Brassica carinata HOM05D002306 ORTHO05D005773 6.1e-36 156.4 312 33.3
BcaC04g20512 Brassica carinata HOM05D002306 ORTHO05D005773 6.1e-36 156.4 322 32.9
BolC9t57152H Brassica oleracea HOM05D002306 ORTHO05D005773 6.1e-36 156.4 322 32.9
BraA10t43138Z Brassica rapa HOM05D002306 ORTHO05D005773 6.1e-36 156.4 316 33.2
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 6.1e-36 156.4 314 32.8
MBI06_g46366_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D005773 6.1e-36 156.4 316 32.6
Sed0009393 Sechium edule HOM05D002306 ORTHO05D005773 6.1e-36 156.4 300 34.7
Hund11654 Selenicereus undatus HOM05D002306 ORTHO05D005773 6.1e-36 156.4 314 33.1
VMungo0647G1725 Vigna mungo HOM05D002306 ORTHO05D005773 6.1e-36 156.4 316 33.2
Thecc.03G200900 Theobroma cacao HOM05D002306 ORTHO05D005773 7.9e-36 156.0 315 32.4
TWI39G0548 Tripterygium wilfordii HOM05D002306 ORTHO05D005773 1.0e-35 155.6 247 37.7
CDE04G0267 Ceratophyllum demersum HOM05D002306 ORTHO05D005773 1.4e-35 155.2 332 31.9
ECA232G4612 Erigeron canadensis HOM05D002306 ORTHO05D005773 1.4e-35 155.2 315 32.7
Potri.015G011300 Populus trichocarpa HOM05D002306 ORTHO05D005773 1.4e-35 155.2 319 33.5
Sc13g0009860 Simmondsia chinensis HOM05D002306 ORTHO05D005773 1.4e-35 155.2 322 31.4
Actinidia08661 Actinidia chinensis HOM05D002306 ORTHO05D005773 1.8e-35 154.8 319 32.3
Lalb_Chr01g0013731 Lupinus albus HOM05D002306 ORTHO05D005773 1.8e-35 154.8 315 32.1
Zm00001eb342430 Zea mays HOM05D002306 ORTHO05D005773 1.8e-35 154.8 327 33.0
Manes.05G190400 Manihot esculenta HOM05D002306 ORTHO05D005773 2.3e-35 154.5 321 33.3
Ah.13g070360 Amaranthus hybridus HOM05D002306 ORTHO05D005773 3.0e-35 154.1 314 31.8
BraA03t10835Z Brassica rapa HOM05D002306 ORTHO05D005773 3.0e-35 154.1 310 33.2
Carub.0008s1325 Capsella rubella HOM05D002306 ORTHO05D005773 3.0e-35 154.1 310 32.9
CARHR266070 Cardamine hirsuta HOM05D002306 ORTHO05D005773 3.0e-35 154.1 308 32.8
Nitab4.5_0000548g0060 Nicotiana tabacum HOM05D002306 ORTHO05D005773 5.1e-35 153.3 310 31.6
vmacro10129 Vaccinium macrocarpon HOM05D002306 ORTHO05D005773 5.1e-35 153.3 346 32.1
Actinidia06142 Actinidia chinensis HOM05D002306 ORTHO05D005773 6.7e-35 152.9 309 33.0
FAN01G0065 Fragaria x ananassa HOM05D002306 ORTHO05D005773 6.7e-35 152.9 331 31.7
FAN03G1878 Fragaria x ananassa HOM05D002306 ORTHO05D005773 6.7e-35 152.9 332 32.2
Nitab4.5_0005491g0070 Nicotiana tabacum HOM05D002306 ORTHO05D005773 6.7e-35 152.9 314 31.8
Pp3c4_28770 Physcomitrium patens HOM05D002306 ORTHO05D005773 6.7e-35 152.9 247 35.2
A03p15450 Brassica napus HOM05D002306 ORTHO05D005773 8.8e-35 152.5 310 32.9
FAN06G4818 Fragaria x ananassa HOM05D002306 ORTHO05D005773 8.8e-35 152.5 331 31.7
Glyma.19G065800 Glycine max HOM05D002306 ORTHO05D005773 8.8e-35 152.5 317 32.5
Cc02_g01380 Coffea canephora HOM05D002306 ORTHO05D005773 1.1e-34 152.1 263 36.5
Lsat_1_v5_gn_9_49801 Lactuca sativa HOM05D002306 ORTHO05D005773 1.1e-34 152.1 309 33.0
Cfa016243 Carpinus fangiana HOM05D002306 ORTHO05D005773 1.5e-34 151.8 314 32.5
Duzib084G0543 Durio zibethinus HOM05D002306 ORTHO05D005773 1.5e-34 151.8 315 32.1
FvH4_7g31980 Fragaria vesca HOM05D002306 ORTHO05D005773 1.5e-34 151.8 317 32.2
FAN10G0091 Fragaria x ananassa HOM05D002306 ORTHO05D005773 1.5e-34 151.8 279 34.4
FAN10G2791 Fragaria x ananassa HOM05D002306 ORTHO05D005773 1.5e-34 151.8 279 34.4
Gohir.A12G249000 Gossypium hirsutum HOM05D002306 ORTHO05D005773 1.5e-34 151.8 315 33.7
Gorai.008G267900 Gossypium raimondii HOM05D002306 ORTHO05D005773 1.5e-34 151.8 315 33.7
Rhsim09G0206400 Rhododendron simsii HOM05D002306 ORTHO05D005773 1.5e-34 151.8 317 32.8
Sp6g15210 Schrenkiella parvula HOM05D002306 ORTHO05D005773 1.5e-34 151.8 313 32.9
AT5G53050 Arabidopsis thaliana HOM05D002306 ORTHO05D005773 2.0e-34 151.4 310 32.3
Cpa.g.sc3.100 Carica papaya HOM05D002306 ORTHO05D005773 2.0e-34 151.4 320 32.5
A03p15420 Brassica napus HOM05D002306 ORTHO05D005773 2.6e-34 151.0 258 35.7
Duzib205G1406 Durio zibethinus HOM05D002306 ORTHO05D005773 2.6e-34 151.0 317 31.9
MD01G1222600 Malus domestica HOM05D002306 ORTHO05D005773 2.6e-34 151.0 332 31.6
Gohir.D12G249800 Gossypium hirsutum HOM05D002306 ORTHO05D005773 3.3e-34 150.6 315 33.3
Mapoly0155s0003 Marchantia polymorpha HOM05D002306 ORTHO05D005773 3.3e-34 150.6 327 31.8
Prupe.2G313000 Prunus persica HOM05D002306 ORTHO05D005773 3.3e-34 150.6 332 31.9
Actinidia34230 Actinidia chinensis HOM05D002306 ORTHO05D005773 4.4e-34 150.2 360 30.6
Sabra12G0015300 Salix brachista HOM05D002306 ORTHO05D005773 4.4e-34 150.2 316 31.3
Eucgr.K00394 Eucalyptus grandis HOM05D002306 ORTHO05D005773 7.4e-34 149.4 265 34.7
Medtr1g007860 Medicago truncatula HOM05D002306 ORTHO05D005773 7.4e-34 149.4 316 31.6
Nn3g18949 Nelumbo nucifera HOM05D002306 ORTHO05D005773 7.4e-34 149.4 322 30.7
HanXRQChr15g0485691 Helianthus annuus HOM05D002306 ORTHO05D005773 9.7e-34 149.1 314 31.5
MD07G1293200 Malus domestica HOM05D002306 ORTHO05D005773 9.7e-34 149.1 332 31.9
Sp7g25780 Schrenkiella parvula HOM05D002306 ORTHO05D005773 9.7e-34 149.1 310 32.9
Ciclev10020415m.g Citrus clementina HOM05D002306 ORTHO05D005773 1.7e-33 148.3 344 31.1
QL09p008623 Quercus lobata HOM05D002306 ORTHO05D005773 1.7e-33 148.3 321 31.2
BraA03t10837Z Brassica rapa HOM05D002306 ORTHO05D005773 2.2e-33 147.9 310 32.3
Dinv29264 Davidia involucrata HOM05D002306 ORTHO05D005773 2.8e-33 147.5 313 31.9
PSO384G1073 Papaver somniferum HOM05D002306 ORTHO05D005773 2.8e-33 147.5 322 30.4
Aa31LG3G9420 Aethionema arabicum HOM05D002306 ORTHO05D005773 3.7e-33 147.1 333 31.2
Hma1.2p1_1587F.1_g292250 Hydrangea macrophylla HOM05D002306 ORTHO05D005773 3.7e-33 147.1 318 32.1
Atru.chr12.2238 Acer truncatum HOM05D002306 ORTHO05D005773 4.8e-33 146.7 314 30.9
CANSAT21G2187 Cannabis sativa HOM05D002306 ORTHO05D005773 4.8e-33 146.7 316 31.6
Psat6g034960 Pisum sativum HOM05D002306 ORTHO05D005773 4.8e-33 146.7 319 31.7
Lsat_1_v5_gn_2_136261 Lactuca sativa HOM05D002306 ORTHO05D005773 6.3e-33 146.4 314 31.5
Oeu037052.1 Olea europaea HOM05D002306 ORTHO05D005773 8.2e-33 146.0 313 30.7
Ca_12784_v3 Cicer arietinum L. HOM05D002306 ORTHO05D005773 1.4e-32 145.2 315 32.1
Ca_12788_v3 Cicer arietinum L. HOM05D002306 ORTHO05D005773 1.4e-32 145.2 315 32.1
Os05g0542200 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D005773 1.4e-32 145.2 314 31.5
Nn1g00292 Nelumbo nucifera HOM05D002306 ORTHO05D005773 1.8e-32 144.8 320 30.6
PSO135G0144 Papaver somniferum HOM05D002306 ORTHO05D005773 2.4e-32 144.4 323 30.3
Zm00001eb294430 Zea mays HOM05D002306 ORTHO05D005773 2.4e-32 144.4 367 31.1
CBR_g52250 Chara braunii HOM05D002306 ORTHO05D005773 3.1e-32 144.1 279 36.9
Actinidia08663 Actinidia chinensis HOM05D002306 ORTHO05D005773 4.1e-32 143.7 320 30.9
DCAR_020335 Daucus carota HOM05D002306 ORTHO05D005773 4.1e-32 143.7 316 31.0
THA.LOC104799971 Tarenaya hassleriana HOM05D002306 ORTHO05D005773 4.1e-32 143.7 263 33.8
Aqoxy6G02068 Aquilegia oxysepala HOM05D002306 ORTHO05D005773 5.3e-32 143.3 263 32.7
GSVIVG01038567001 Vitis vinifera HOM05D002306 ORTHO05D005773 5.3e-32 143.3 321 31.2
ATR0602G226 Amborella trichopoda HOM05D002306 ORTHO05D005773 9.1e-32 142.5 265 33.2
C09p42760 Brassica napus HOM05D002306 ORTHO05D005773 2.0e-31 141.4 350 29.7
Oeu060994.1 Olea europaea HOM05D002306 ORTHO05D005773 4.5e-31 140.2 313 30.0
CBR_g39074 Chara braunii HOM05D002306 ORTHO05D005773 8.5e-30 136.0 258 34.9
AL8G27680 Arabidopsis lyrata HOM05D002306 ORTHO05D005773 2.7e-28 131.0 353 28.3
Sabra15G0009300 Salix brachista HOM05D002306 ORTHO05D005773 1.5e-26 125.2 368 28.0
Lj3C903G6 Lonicera japonica HOM05D002306 ORTHO05D005773 4.8e-25 120.2 236 34.7
SHI02360 Sapria himalayana HOM05D002306 ORTHO05D005773 1.1e-21 109.0 277 30.7
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 1.5e-21 108.6 144 40.3
PRCOL_00002303 Prasinoderma coloniale HOM05D002306 ORTHO05D005773 3.2e-21 107.5 323 32.8
MBI06_g36471_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D005773 4.4e-18 97.1 200 34.0
unitig_0.g2458 Utricularia gibba HOM05D000451 ORTHO05D000351 2.4e-16 91.3 268 27.6
COL.COLO4_16788 Corchorus olitorius HOM05D002306 ORTHO05D005773 1.0e-14 85.9 205 31.2
TPR.G40491 Trifolium pratense HOM05D002306 ORTHO05D005773 6.1e-12 76.6 60 56.7
SEGI_37240 Sequoiadendron giganteum HOM05D002306 ORTHO05D005773 1.8e-11 75.1 57 59.6
CDE03G0170 Ceratophyllum demersum HOM05D002306 ORTHO05D005773 4.5e-07 60.5 52 50.0


User provided reference genes

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