Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre01.g058521 Chlamydomonas reinhardtii HOM05D004762 ORTHO05D005972 8.2e-294 1013.1 543 100.0
AagrBONN_evm.TU.Sc2ySwM_228.3247 Anthoceros agrestis HOM05D004762 ORTHO05D005972 3.2e-96 356.7 504 43.8
Prupe.2G252400 Prunus persica HOM05D004762 ORTHO05D005972 4.2e-96 356.3 507 43.2
FAN10G2322 Fragaria x ananassa HOM05D004762 ORTHO05D005972 2.7e-95 353.6 534 42.1
ECA238G4598 Erigeron canadensis HOM05D001399 ORTHO05D001670 1.0e-94 351.7 507 42.2
CSS0039953 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 1.8e-94 350.9 507 42.6
CSS0044129 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 1.8e-94 350.9 507 42.6
Aqoxy7G00585 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 2.3e-94 350.5 507 43.2
MD07G1223900 Malus domestica HOM05D004762 ORTHO05D005972 2.3e-94 350.5 507 43.0
Mapoly0096s0017 Marchantia polymorpha HOM05D004762 ORTHO05D005972 3.9e-94 349.7 499 43.1
FvH4_7g24680 Fragaria vesca HOM05D004762 ORTHO05D005972 6.7e-94 349.0 534 41.6
PGR142G3177 Punica granatum HOM05D004762 ORTHO05D005972 2.5e-93 347.1 507 42.4
Lalb_Chr04g0254441 Lupinus albus HOM05D004762 ORTHO05D005972 1.6e-92 344.4 507 42.2
PGSC0003DMG400019183 Solanum tuberosum HOM05D004762 ORTHO05D005972 2.1e-92 344.0 540 42.0
CAN.G1087.1 Capsicum annuum HOM05D004762 ORTHO05D005972 2.8e-92 343.6 536 40.9
Pp3c14_26870 Physcomitrium patens HOM05D004762 ORTHO05D005972 2.8e-92 343.6 525 41.9
GSVIVG01032791001 Vitis vinifera HOM05D004762 ORTHO05D005972 2.8e-92 343.6 507 42.8
RcHm_v2.0_Chr1g0370541 Rosa chinensis HOM05D004762 ORTHO05D005972 3.7e-92 343.2 534 41.2
Solyc10g076800.2 Solanum lycopersicum HOM05D004762 ORTHO05D005972 4.8e-92 342.8 540 41.9
Glyma.07G056300 Glycine max HOM05D004762 ORTHO05D005972 6.2e-92 342.4 533 40.9
Sed0015827 Sechium edule HOM05D004762 ORTHO05D005972 6.2e-92 342.4 539 41.6
Potri.012G095500 Populus trichocarpa HOM05D004762 ORTHO05D005972 8.1e-92 342.0 507 42.6
Phvul.010G113600 Phaseolus vulgaris HOM05D004762 ORTHO05D005972 1.4e-91 341.3 533 41.1
Ciclev10031450m.g Citrus clementina HOM05D004762 ORTHO05D005972 1.8e-91 340.9 534 41.2
BcaB02g09041 Brassica carinata HOM05D004762 ORTHO05D005972 2.4e-91 340.5 508 41.9
MD01G1154800 Malus domestica HOM05D004762 ORTHO05D005972 2.4e-91 340.5 530 41.5
Nitab4.5_0000797g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 2.4e-91 340.5 539 41.6
Nitab4.5_0013304g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 2.4e-91 340.5 533 42.2
Carub.0004s2241 Capsella rubella HOM05D004762 ORTHO05D005972 3.1e-91 340.1 535 41.7
CBR_g12682 Chara braunii HOM05D004762 ORTHO05D005972 3.1e-91 340.1 518 41.9
Cc08_g07190 Coffea canephora HOM05D004762 ORTHO05D005972 3.1e-91 340.1 541 40.9
EL10Ac2g04854 Beta vulgaris HOM05D004762 ORTHO05D005972 4.0e-91 339.7 507 41.8
AUR62012271 Chenopodium quinoa HOM05D004762 ORTHO05D005972 4.0e-91 339.7 507 42.6
CAN.G1305.22 Capsicum annuum HOM05D004762 ORTHO05D005972 5.3e-91 339.3 542 40.8
SalBow6G6782 Salvia bowleyana HOM05D004762 ORTHO05D005972 5.3e-91 339.3 541 40.7
AT2G40190 Arabidopsis thaliana HOM05D004762 ORTHO05D005972 6.9e-91 339.0 535 40.9
A05p06240 Brassica napus HOM05D004762 ORTHO05D005972 6.9e-91 339.0 506 41.5
CsaV3_5G010300 Cucumis sativus L. HOM05D004762 ORTHO05D005972 6.9e-91 339.0 521 41.7
VMungo0331G1989 Vigna mungo HOM05D004762 ORTHO05D005972 6.9e-91 339.0 535 40.6
Atru.BG.273.p Acer truncatum HOM05D004762 ORTHO05D005972 9.0e-91 338.6 507 42.4
Peaxi162Scf00284g00722 Petunia axillaris HOM05D004762 ORTHO05D005972 9.0e-91 338.6 532 41.4
HanXRQChr14g0459541 Helianthus annuus HOM05D004762 ORTHO05D005972 1.2e-90 338.2 540 41.5
Glyma.16G025200 Glycine max HOM05D004762 ORTHO05D005972 1.5e-90 337.8 538 40.9
Manes.07G131500 Manihot esculenta HOM05D004762 ORTHO05D005972 1.5e-90 337.8 542 41.0
TAR636G3670 Trochodendron aralioides HOM05D004762 ORTHO05D005972 1.5e-90 337.8 538 41.4
CANSAT56G2662 Cannabis sativa HOM05D004762 ORTHO05D005972 2.0e-90 337.4 507 41.2
PSO675G7276 Papaver somniferum HOM05D004762 ORTHO05D005972 2.0e-90 337.4 513 42.1
TWI09G1175 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 2.6e-90 337.0 510 40.8
TWI53G2041 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 2.6e-90 337.0 509 41.3
HPP92_020134 Vanilla planifolia HOM05D004762 ORTHO05D005972 2.6e-90 337.0 510 41.2
QL06p052059 Quercus lobata HOM05D004762 ORTHO05D005972 3.4e-90 336.7 543 40.3
Rhsim03G0145100 Rhododendron simsii HOM05D004762 ORTHO05D005972 3.4e-90 336.7 535 41.1
COL.COLO4_23625 Corchorus olitorius HOM05D004762 ORTHO05D005972 4.5e-90 336.3 507 40.6
AL108U10020 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 5.8e-90 335.9 535 40.7
Duzib106G1587 Durio zibethinus HOM05D004762 ORTHO05D005972 1.0e-89 335.1 507 40.8
Sc10g0002460 Simmondsia chinensis HOM05D004762 ORTHO05D005972 1.0e-89 335.1 536 41.2
Cfa001301 Carpinus fangiana HOM05D004762 ORTHO05D005972 1.3e-89 334.7 543 41.3
Thecc.10G014000 Theobroma cacao HOM05D004762 ORTHO05D005972 1.7e-89 334.3 534 40.3
BraA05t19588Z Brassica rapa HOM05D004762 ORTHO05D005972 2.2e-89 334.0 537 41.0
FAN06G2944 Fragaria x ananassa HOM05D004762 ORTHO05D005972 2.2e-89 334.0 563 39.6
Nn1g09364 Nelumbo nucifera HOM05D004762 ORTHO05D005972 2.9e-89 333.6 507 41.6
Psat4g160680 Pisum sativum HOM05D004762 ORTHO05D005972 2.9e-89 333.6 507 40.6
CiPaw.01G300200 Carya illinoinensis HOM05D004762 ORTHO05D005972 3.8e-89 333.2 534 40.6
Sp4g22540 Schrenkiella parvula HOM05D004762 ORTHO05D005972 3.8e-89 333.2 532 41.4
Gorai.013G017200 Gossypium raimondii HOM05D004762 ORTHO05D005972 6.5e-89 332.4 534 39.7
Hma1.2p1_0145F.1_g065350 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 6.5e-89 332.4 537 40.2
Medtr8g027750 Medicago truncatula HOM05D004762 ORTHO05D005972 8.4e-89 332.0 538 40.1
PSO017G1441 Papaver somniferum HOM05D004762 ORTHO05D005972 8.4e-89 332.0 535 41.3
BcaC02g12138 Brassica carinata HOM05D004762 ORTHO05D005972 1.4e-88 331.3 535 40.6
C04p07190 Brassica napus HOM05D004762 ORTHO05D005972 1.4e-88 331.3 535 40.6
Lj3g0010190 Lotus japonicus HOM05D004762 ORTHO05D005972 1.4e-88 331.3 539 39.9
SMO358G0322 Selaginella moellendorffii HOM05D004762 ORTHO05D005972 1.4e-88 331.3 531 40.5
arahy.Tifrunner.gnm1.ann1.BGVI4S Arachis hypogaea HOM05D004762 ORTHO05D005972 2.5e-88 330.5 540 39.8
Haze_17244 Corylus avellana HOM05D004762 ORTHO05D005972 3.2e-88 330.1 552 40.6
FAN01G2296 Fragaria x ananassa HOM05D004762 ORTHO05D005972 4.2e-88 329.7 580 38.6
Gohir.D13G015700 Gossypium hirsutum HOM05D004762 ORTHO05D005972 4.2e-88 329.7 534 39.7
BolC4t22343H Brassica oleracea HOM05D004762 ORTHO05D005972 9.3e-88 328.6 536 40.7
ATR0580G181 Amborella trichopoda HOM05D004762 ORTHO05D005972 1.2e-87 328.2 537 39.7
CDE02G4330 Ceratophyllum demersum HOM05D004762 ORTHO05D005972 1.6e-87 327.8 536 38.8
ClCG07G004360 Citrullus lanatus HOM05D004762 ORTHO05D005972 1.6e-87 327.8 575 39.3
COL.COLO4_25767 Corchorus olitorius HOM05D004762 ORTHO05D005972 1.6e-87 327.8 534 39.1
Eucgr.G03076 Eucalyptus grandis HOM05D004762 ORTHO05D005972 2.1e-87 327.4 542 39.7
Thhalv10016619m.g Eutrema salsugineum HOM05D004762 ORTHO05D005972 3.5e-87 326.6 535 40.6
Lsat_1_v5_gn_2_124101 Lactuca sativa HOM05D004762 ORTHO05D005972 3.5e-87 326.6 508 41.1
PSO478G3676 Papaver somniferum HOM05D004762 ORTHO05D005972 3.5e-87 326.6 534 40.1
Migut.F00664 Erythranthe guttata HOM05D004762 ORTHO05D005972 1.8e-86 324.3 540 40.0
Aa31LG5G19380 Aethionema arabicum HOM05D004762 ORTHO05D005972 3.0e-86 323.6 539 39.9
arahy.Tifrunner.gnm1.ann1.NBD53L Arachis hypogaea HOM05D004762 ORTHO05D005972 1.1e-85 321.6 552 39.1
PSO017G5956 Papaver somniferum HOM05D004762 ORTHO05D005972 3.3e-85 320.1 553 39.6
Ca_23540_v3 Cicer arietinum L. HOM05D004762 ORTHO05D005972 7.4e-85 318.9 530 39.2
vmacro06958 Vaccinium macrocarpon HOM05D004762 ORTHO05D005972 7.4e-85 318.9 567 38.3
arahy.Tifrunner.gnm1.ann1.YY9F0M Arachis hypogaea HOM05D004762 ORTHO05D005972 9.6e-85 318.5 559 38.3
AL4G37920 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 1.6e-84 317.8 535 39.1
Zm00001eb030250 Zea mays HOM05D004762 ORTHO05D005972 2.1e-84 317.4 536 39.6
DCAR_024818 Daucus carota HOM05D004762 ORTHO05D005972 2.8e-84 317.0 507 39.8
FAN03G0495 Fragaria x ananassa HOM05D004762 ORTHO05D005972 2.8e-84 317.0 552 38.9
PRCOL_00001728 Prasinoderma coloniale HOM05D004762 ORTHO05D005972 2.4e-83 313.9 513 41.7
Lj8A64T49 Lonicera japonica HOM05D004762 ORTHO05D005972 4.1e-83 313.2 535 40.0
Hma1.2p1_0523F.1_g172170 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 5.9e-82 309.3 537 39.3
Oeu043882.1 Olea europaea HOM05D004762 ORTHO05D005972 7.6e-82 308.9 588 37.1
Oeu011273.2 Olea europaea HOM05D004762 ORTHO05D005972 5.5e-80 302.8 623 35.0
MCO10G125 Micromonas commoda HOM05D004762 ORTHO05D005972 1.6e-79 301.2 551 38.7
DCAR_007786 Daucus carota HOM05D004762 ORTHO05D005972 2.7e-79 300.4 520 39.2
Gohir.A13G014500 Gossypium hirsutum HOM05D004762 ORTHO05D005972 7.9e-79 298.9 534 37.1
AUR62022908 Chenopodium quinoa HOM05D004762 ORTHO05D005972 1.8e-78 297.7 456 41.7
TPR.G15355 Trifolium pratense HOM05D004762 ORTHO05D005972 1.6e-76 291.2 448 41.7
MELO3C018365.2 Cucumis melo HOM05D004762 ORTHO05D005972 2.4e-75 287.3 384 44.5
Hma1.2p1_2705F.1_g327160 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 2.4e-75 287.3 443 41.5
SGA_v2.0_scaffold44G16679 Striga asiatica HOM05D004762 ORTHO05D005972 3.1e-75 287.0 380 44.7
Sabra15G0114600 Salix brachista HOM05D004762 ORTHO05D005972 3.8e-73 280.0 648 32.7
unitig_748.g8448 Utricularia gibba HOM05D004762 ORTHO05D005972 2.0e-69 267.7 503 37.2
Actinidia33916 Actinidia chinensis HOM05D004762 ORTHO05D005972 1.9e-64 251.1 374 42.0
Haze_26859 Corylus avellana HOM05D004762 ORTHO05D005972 4.2e-64 250.0 539 31.2
BcaC02g12136 Brassica carinata HOM05D004762 ORTHO05D005972 5.1e-62 243.0 368 43.2
SGA_v2.0_scaffold60G20982 Striga asiatica HOM05D004762 ORTHO05D005972 3.5e-50 203.8 528 32.4
Sopen10g028440 Solanum pennellii HOM05D004762 ORTHO05D005972 5.9e-50 203.0 282 44.7
Hund15913 Selenicereus undatus HOM05D004762 ORTHO05D005972 7.7e-50 202.6 537 32.0
Os12g0583000 Oryza sativa ssp. japonica HOM05D004762 ORTHO05D005972 1.7e-49 201.4 336 40.8
CARHR135230 Cardamine hirsuta HOM05D004762 ORTHO05D005972 8.5e-49 199.1 275 43.6
Dinv21748 Davidia involucrata HOM05D004762 ORTHO05D005972 4.7e-47 193.4 275 41.5
Gohir.D06G056233 Gossypium hirsutum HOM05D004762 ORTHO05D005972 8.3e-44 182.6 327 38.2
PSO017G2836 Papaver somniferum HOM05D004762 ORTHO05D005972 7.2e-40 169.5 246 43.5
Gorai.004G138800 Gossypium raimondii HOM05D004762 ORTHO05D005972 1.9e-32 144.8 324 32.4
Gohir.D08G135600 Gossypium hirsutum HOM05D004762 ORTHO05D005972 2.5e-32 144.4 324 32.1
BraA04t18511Z Brassica rapa HOM05D004762 ORTHO05D001193 4.0e-30 137.1 318 33.0
TAR633G0702 Trochodendron aralioides HOM05D003030 ORTHO05D003610 2.7e-26 124.4 210 38.6
SEGI_20752 Sequoiadendron giganteum HOM05D004762 ORTHO05D005972 8.6e-25 119.4 198 40.4
Nitab4.5_0006049g0030 Nicotiana tabacum HOM05D004762 ORTHO05D005972 1.5e-24 118.6 195 39.5
Aqoxy4G02491 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 1.2e-23 115.5 185 41.1
QL11p009420 Quercus lobata HOM05D004762 ORTHO05D005972 6.2e-23 113.2 178 40.4
Potri.015G093000 Populus trichocarpa HOM05D004762 ORTHO05D005972 8.0e-23 112.8 258 35.3
BcaB01g03555 Brassica carinata HOM05D004762 ORTHO05D005972 1.4e-22 112.1 147 49.0
Cpa.g.sc1441.3 Carica papaya HOM05D004762 ORTHO05D005972 9.8e-21 105.9 121 43.8
Aqoxy4G02490 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 2.0e-18 98.2 167 40.1
Aqoxy4G02489 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 2.7e-18 97.8 177 36.2
BcaB06g29139 Brassica carinata HOM05D004762 ORTHO05D005972 4.6e-18 97.1 184 35.3
EL10Ac2g03328 Beta vulgaris HOM05D004762 ORTHO05D005972 6.0e-18 96.7 180 36.1
A04p29970 Brassica napus HOM05D004762 ORTHO05D001193 5.6e-16 90.1 318 27.7
EL10Ac6g13956 Beta vulgaris HOM05D004762 ORTHO05D005972 3.6e-15 87.4 164 36.0
CDE06G2415 Ceratophyllum demersum HOM05D004141 ORTHO05D005416 7.1e-11 73.2 186 33.3
EL10Ac3g06411 Beta vulgaris HOM05D004762 ORTHO05D005972 5.1e-09 67.0 34 88.2
Cpa.g.sc77.17 Carica papaya HOM05D004141 ORTHO05D005416 1.1e-08 65.9 178 33.7
MD13G1267900 Malus domestica HOM05D004762 ORTHO05D005972 1.5e-08 65.5 36 77.8
Nitab4.5_0001180g0090 Nicotiana tabacum HOM05D004762 ORTHO05D005972 3.3e-08 64.3 56 53.6
COL.COLO4_17535 Corchorus olitorius HOM05D004141 ORTHO05D005416 5.6e-08 63.5 182 33.5
Carub.0002s2562 Capsella rubella HOM05D004141 ORTHO05D005416 7.3e-08 63.2 177 30.5
Aa31LG4G2230 Aethionema arabicum HOM05D004141 ORTHO05D005416 9.5e-08 62.8 181 33.7
Sp5g33830 Schrenkiella parvula HOM05D004141 ORTHO05D005416 1.6e-07 62.0 177 32.8
SMO200G0224 Selaginella moellendorffii HOM05D004141 ORTHO05D005416 1.6e-07 62.0 223 28.7
Phvul.010G113266 Phaseolus vulgaris HOM05D004762 ORTHO05D005972 2.1e-07 61.6 116 31.9
AT1G78800 Arabidopsis thaliana HOM05D004141 ORTHO05D005416 2.8e-07 61.2 177 30.5
PSO017G5924 Papaver somniferum HOM05D004141 ORTHO05D005416 2.8e-07 61.2 181 30.9
SEGI_02041 Sequoiadendron giganteum HOM05D004762 ORTHO05D005972 3.6e-07 60.8 97 42.3
Thhalv10007837m.g Eutrema salsugineum HOM05D004141 ORTHO05D005416 4.7e-07 60.5 180 32.8
AL2G39200 Arabidopsis lyrata HOM05D004141 ORTHO05D005416 8.1e-07 59.7 177 30.5
Migut.H02002 Erythranthe guttata HOM05D004141 ORTHO05D005416 8.1e-07 59.7 181 32.6
BcaC08g47454 Brassica carinata HOM05D004141 ORTHO05D005416 1.1e-06 59.3 178 31.5
C06p52680 Brassica napus HOM05D004141 ORTHO05D005416 1.1e-06 59.3 178 31.5
BolC6t40287H Brassica oleracea HOM05D004141 ORTHO05D005416 1.1e-06 59.3 178 31.5
PGR004G1319 Punica granatum HOM05D004141 ORTHO05D005416 1.1e-06 59.3 181 32.0
PGR117G0003 Punica granatum HOM05D004141 ORTHO05D005416 1.1e-06 59.3 181 32.0
Thecc.07G117900 Theobroma cacao HOM05D004141 ORTHO05D005416 1.1e-06 59.3 155 32.9
AagrBONN_evm.TU.Sc2ySwM_117.897 Anthoceros agrestis HOM05D004141 ORTHO05D005416 1.8e-06 58.5 173 29.5
A07p44000 Brassica napus HOM05D004141 ORTHO05D005416 1.8e-06 58.5 178 31.5
BraA03t11487Z Brassica rapa HOM05D000223 ORTHO05D001193 1.8e-06 58.5 51 58.8
PSO170G2286 Papaver somniferum HOM05D004141 ORTHO05D005416 1.8e-06 58.5 181 30.9
BcaB03g16036 Brassica carinata HOM05D004141 ORTHO05D005416 3.1e-06 57.8 178 31.5
Duzib213G0637 Durio zibethinus HOM05D004141 ORTHO05D005416 3.1e-06 57.8 132 34.8
Medtr1g104880 Medicago truncatula HOM05D004141 ORTHO05D005416 4.0e-06 57.4 178 31.5
BcaC01g05421 Brassica carinata HOM05D002909 ORTHO05D000493 5.2e-06 57.0 145 33.8
C03p26800 Brassica napus HOM05D000223 ORTHO05D001193 5.2e-06 57.0 145 33.8
BolC3t15065H Brassica oleracea HOM05D000223 ORTHO05D001193 5.2e-06 57.0 145 33.8
Duzib213G0227 Durio zibethinus HOM05D004141 ORTHO05D005416 5.2e-06 57.0 155 32.9
BraA07t31908Z Brassica rapa HOM05D004141 ORTHO05D005416 6.8e-06 56.6 375 26.4


User provided reference genes

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