Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre01.g049400 Chlamydomonas reinhardtii HOM05D004413 ORTHO05D005199 1.7e-288 995.3 513 100.0
COL.COLO4_30064 Corchorus olitorius HOM05D004413 ORTHO05D005199 9.8e-47 192.2 277 41.9
Mapoly0103s0075 Marchantia polymorpha HOM05D004413 ORTHO05D005199 1.4e-45 188.3 276 40.6
Haze_03259 Corylus avellana HOM05D004413 ORTHO05D005199 2.4e-45 187.6 255 40.8
Cfa010719 Carpinus fangiana HOM05D004413 ORTHO05D005199 9.2e-45 185.7 255 40.4
FAN13G1137 Fragaria x ananassa HOM05D004413 ORTHO05D005199 1.2e-44 185.3 257 41.6
FAN18G0644 Fragaria x ananassa HOM05D004413 ORTHO05D005199 1.2e-44 185.3 257 41.2
CANSAT01G1789 Cannabis sativa HOM05D004413 ORTHO05D005199 2.7e-44 184.1 242 39.7
FvH4_5g32720 Fragaria vesca HOM05D004413 ORTHO05D005199 3.5e-44 183.7 257 41.2
CANSAT01G0573 Cannabis sativa HOM05D004413 ORTHO05D005199 4.6e-44 183.3 242 39.7
Sc17g0005470 Simmondsia chinensis HOM05D004413 ORTHO05D005199 3.0e-43 180.6 269 39.0
Migut.N01644 Erythranthe guttata HOM05D004413 ORTHO05D005199 3.9e-43 180.3 258 39.1
MD07G1003300 Malus domestica HOM05D004413 ORTHO05D005199 6.6e-43 179.5 262 39.3
Pp3c11_18200 Physcomitrium patens HOM05D004413 ORTHO05D005199 8.6e-43 179.1 275 36.7
Thecc.01G415800 Theobroma cacao HOM05D004413 ORTHO05D005199 8.6e-43 179.1 253 40.7
RcHm_v2.0_Chr7g0230361 Rosa chinensis HOM05D004413 ORTHO05D005199 3.3e-42 177.2 256 40.2
Lj2g0027526 Lotus japonicus HOM05D004413 ORTHO05D005199 5.6e-42 176.4 242 40.5
SMO351G0528 Selaginella moellendorffii HOM05D004413 ORTHO05D005199 7.3e-42 176.0 255 37.6
CANSAT64G0940 Cannabis sativa HOM05D004413 ORTHO05D005199 9.5e-42 175.6 257 38.1
THA.LOC104826126 Tarenaya hassleriana HOM05D004413 ORTHO05D005199 9.5e-42 175.6 248 39.1
Medtr6g463300 Medicago truncatula HOM05D004413 ORTHO05D005199 1.2e-41 175.3 242 40.1
CSS0018065 Camellia sinensis var. sinensis HOM05D004413 ORTHO05D005199 1.6e-41 174.9 250 39.6
Gohir.A08G146400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.6e-41 174.9 248 39.9
Manes.10G150400 Manihot esculenta HOM05D004413 ORTHO05D005199 1.6e-41 174.9 269 40.1
CARHR004350 Cardamine hirsuta HOM05D004413 ORTHO05D005199 3.6e-41 173.7 242 40.1
Nn3g19386 Nelumbo nucifera HOM05D004413 ORTHO05D005199 3.6e-41 173.7 258 38.8
Phvul.004G126300 Phaseolus vulgaris HOM05D004413 ORTHO05D005199 3.6e-41 173.7 249 40.2
Atru.chr11.2687 Acer truncatum HOM05D004413 ORTHO05D005199 4.7e-41 173.3 271 37.6
ClCG09G003830 Citrullus lanatus HOM05D004413 ORTHO05D005199 6.2e-41 172.9 273 37.7
CsaV3_7G031400 Cucumis sativus L. HOM05D004413 ORTHO05D005199 8.1e-41 172.6 265 37.7
Potri.001G228000 Populus trichocarpa HOM05D004413 ORTHO05D005199 8.1e-41 172.6 244 41.8
GSVIVG01001402001 Vitis vinifera HOM05D004413 ORTHO05D005199 8.1e-41 172.6 255 36.5
Gohir.A01G019401 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.1e-40 172.2 248 39.5
Nitab4.5_0001006g0010 Nicotiana tabacum HOM05D004413 ORTHO05D005199 1.1e-40 172.2 242 38.4
Cpa.g.sc189.31 Carica papaya HOM05D004413 ORTHO05D005199 1.4e-40 171.8 258 39.1
Hund04656 Selenicereus undatus HOM05D004413 ORTHO05D005199 1.4e-40 171.8 266 38.3
SGA_v2.0_scaffold95G28780 Striga asiatica HOM05D004413 ORTHO05D005199 1.4e-40 171.8 256 36.7
Glyma.09G152600 Glycine max HOM05D004413 ORTHO05D005199 1.8e-40 171.4 259 37.8
Gorai.004G174800 Gossypium raimondii HOM05D004413 ORTHO05D005199 1.8e-40 171.4 248 39.5
Aa31LG1G19950 Aethionema arabicum HOM05D004413 ORTHO05D005199 2.3e-40 171.0 246 39.4
arahy.Tifrunner.gnm1.ann1.8FHU3N Arachis hypogaea HOM05D004413 ORTHO05D005199 2.3e-40 171.0 271 37.6
CBR_g50781 Chara braunii HOM05D004413 ORTHO05D005199 2.3e-40 171.0 267 39.7
TAR636G2532 Trochodendron aralioides HOM05D004413 ORTHO05D005199 2.3e-40 171.0 276 36.6
HPP92_005742 Vanilla planifolia HOM05D004413 ORTHO05D005199 2.3e-40 171.0 268 39.2
arahy.Tifrunner.gnm1.ann1.0XNQ2B Arachis hypogaea HOM05D004413 ORTHO05D005199 3.1e-40 170.6 256 38.3
Gohir.A08G005500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 3.1e-40 170.6 248 39.1
VMungo0464G1648 Vigna mungo HOM05D004413 ORTHO05D005199 3.1e-40 170.6 243 40.3
Lalb_Chr19g0124231 Lupinus albus HOM05D004413 ORTHO05D005199 4.0e-40 170.2 257 38.9
PGR031G3941 Punica granatum HOM05D004413 ORTHO05D005199 4.0e-40 170.2 248 38.7
Sp1g03790 Schrenkiella parvula HOM05D004413 ORTHO05D005199 4.0e-40 170.2 244 39.8
arahy.Tifrunner.gnm1.ann1.MVM3BY Arachis hypogaea HOM05D004413 ORTHO05D005199 5.2e-40 169.9 261 37.9
SEGI_33976 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 6.8e-40 169.5 282 36.5
Ciclev10031642m.g Citrus clementina HOM05D004413 ORTHO05D005199 8.9e-40 169.1 250 39.2
FAN08G0618 Fragaria x ananassa HOM05D004413 ORTHO05D005199 8.9e-40 169.1 266 38.3
Glyma.16G203400 Glycine max HOM05D004413 ORTHO05D005199 8.9e-40 169.1 258 37.2
Gohir.D08G167400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 8.9e-40 169.1 248 39.1
Nitab4.5_0000346g0070 Nicotiana tabacum HOM05D004413 ORTHO05D005199 8.9e-40 169.1 246 36.6
MSTRG.28094 Avicennia marina HOM05D004413 ORTHO05D005199 1.2e-39 168.7 256 38.7
Lalb_Chr19g0124241 Lupinus albus HOM05D004413 ORTHO05D005199 1.2e-39 168.7 242 38.8
Sed0007945 Sechium edule HOM05D004413 ORTHO05D005199 1.2e-39 168.7 244 38.1
GSVIVG01037065001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.2e-39 168.7 271 36.2
arahy.Tifrunner.gnm1.ann1.X2RX6E Arachis hypogaea HOM05D004413 ORTHO05D005199 1.5e-39 168.3 260 37.7
CAN.G1393.6 Capsicum annuum HOM05D004413 ORTHO05D005199 1.5e-39 168.3 277 36.1
Duzib138G1189 Durio zibethinus HOM05D004413 ORTHO05D005199 1.5e-39 168.3 246 41.5
C08p01610 Brassica napus HOM05D004413 ORTHO05D005199 2.0e-39 167.9 244 39.8
BolC8t46964H Brassica oleracea HOM05D004413 ORTHO05D005199 2.0e-39 167.9 244 39.8
Psat6g015760 Pisum sativum HOM05D004413 ORTHO05D005199 2.6e-39 167.5 242 39.3
BcaB03g13464 Brassica carinata HOM05D004413 ORTHO05D005199 3.4e-39 167.2 244 40.2
Carub.0001s0418 Capsella rubella HOM05D004413 ORTHO05D005199 3.4e-39 167.2 244 39.8
AUR62016087 Chenopodium quinoa HOM05D004413 ORTHO05D005199 3.4e-39 167.2 253 37.9
Psat1g110760 Pisum sativum HOM05D004413 ORTHO05D005199 3.4e-39 167.2 242 39.7
PSO210G4410 Papaver somniferum HOM05D004413 ORTHO05D005199 4.4e-39 166.8 260 36.9
Aqoxy2G00074 Aquilegia oxysepala HOM05D004413 ORTHO05D005199 5.8e-39 166.4 243 38.7
BcaC07g36870 Brassica carinata HOM05D004413 ORTHO05D005199 5.8e-39 166.4 244 39.3
A08p36630 Brassica napus HOM05D004413 ORTHO05D005199 7.6e-39 166.0 244 39.8
BraA08t35565Z Brassica rapa HOM05D004413 ORTHO05D005199 7.6e-39 166.0 244 39.8
CDE04G1207 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 7.6e-39 166.0 243 37.0
TPR.G37653 Trifolium pratense HOM05D004413 ORTHO05D005199 7.6e-39 166.0 282 36.2
Sed0010518 Sechium edule HOM05D004413 ORTHO05D005199 9.9e-39 165.6 266 36.5
TWI09G1219 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 9.9e-39 165.6 242 39.7
MD02G1318000 Malus domestica HOM05D004413 ORTHO05D005199 1.3e-38 165.2 285 36.5
QL04p002426 Quercus lobata HOM05D004413 ORTHO05D005199 1.7e-38 164.9 284 34.5
Thhalv10007024m.g Eutrema salsugineum HOM05D004413 ORTHO05D005199 2.2e-38 164.5 279 36.9
Solyc01g074020.3 Solanum lycopersicum HOM05D004413 ORTHO05D005199 2.2e-38 164.5 250 37.2
Ca_02163_v3 Cicer arietinum L. HOM05D004413 ORTHO05D005199 2.9e-38 164.1 242 38.4
AUR62035034 Chenopodium quinoa HOM05D004413 ORTHO05D005199 3.8e-38 163.7 253 37.5
Atru.chr1.1383 Acer truncatum HOM05D004413 ORTHO05D005199 6.4e-38 162.9 272 37.1
HanXRQChr16g0520481 Helianthus annuus HOM05D004413 ORTHO05D005199 8.4e-38 162.5 261 36.4
Prupe.2G005000 Prunus persica HOM05D004413 ORTHO05D005199 1.1e-37 162.2 221 42.1
PSO210G0136 Papaver somniferum HOM05D004413 ORTHO05D005199 1.4e-37 161.8 286 35.3
CDE12G0144 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 1.9e-37 161.4 242 36.0
Peaxi162Scf01343g00011 Petunia axillaris HOM05D004413 ORTHO05D005199 1.9e-37 161.4 258 36.0
TPR.G25309 Trifolium pratense HOM05D004413 ORTHO05D005199 1.9e-37 161.4 281 36.3
PRCOL_00005718 Prasinoderma coloniale HOM05D004413 ORTHO05D005199 4.1e-37 160.2 316 37.3
QL04p000397 Quercus lobata HOM05D004413 ORTHO05D005199 7.1e-37 159.5 209 40.7
AT1G04945 Arabidopsis thaliana HOM05D004413 ORTHO05D005199 9.2e-37 159.1 255 38.8
AagrBONN_evm.TU.Sc2ySwM_228.625 Anthoceros agrestis HOM05D004413 ORTHO05D005199 1.2e-36 158.7 268 38.1
PSO170G4481 Papaver somniferum HOM05D004413 ORTHO05D005199 1.6e-36 158.3 257 36.2
ATR0582G367 Amborella trichopoda HOM05D004413 ORTHO05D005199 2.7e-36 157.5 285 36.5
AL1G14670 Arabidopsis lyrata HOM05D004413 ORTHO05D005199 2.7e-36 157.5 255 38.4
SHI15877 Sapria himalayana HOM05D004413 ORTHO05D005199 2.7e-36 157.5 258 38.0
EL10Ac3g05776 Beta vulgaris HOM05D004413 ORTHO05D005199 7.8e-36 156.0 268 36.2
Sabra16G0135900 Salix brachista HOM05D004413 ORTHO05D005199 7.8e-36 156.0 257 38.1
BcaC08g43081 Brassica carinata HOM05D004413 ORTHO05D005199 1.0e-35 155.6 244 37.7
Lsat_1_v5_gn_4_46341 Lactuca sativa HOM05D004413 ORTHO05D005199 1.0e-35 155.6 267 36.0
C06p03410 Brassica napus HOM05D004413 ORTHO05D005199 2.3e-35 154.5 241 38.2
BolC6t35480H Brassica oleracea HOM05D004413 ORTHO05D005199 2.3e-35 154.5 241 38.2
vmacro21162 Vaccinium macrocarpon HOM05D004413 ORTHO05D005199 3.0e-35 154.1 288 33.0
Oeu013591.1 Olea europaea HOM05D004413 ORTHO05D005199 5.1e-35 153.3 248 35.9
Ah.07g208370 Amaranthus hybridus HOM05D004413 ORTHO05D005199 6.6e-35 152.9 282 35.1
Cc02_g27150 Coffea canephora HOM05D004413 ORTHO05D005199 1.1e-34 152.1 258 36.0
A06p04180 Brassica napus HOM05D004413 ORTHO05D005199 1.5e-34 151.8 245 38.0
BraA06t23623Z Brassica rapa HOM05D004413 ORTHO05D005199 1.9e-34 151.4 245 37.6
CiPaw.16G012500 Carya illinoinensis HOM05D004413 ORTHO05D005199 7.3e-34 149.4 224 37.5
Zm00001eb140340 Zea mays HOM05D004413 ORTHO05D005199 3.6e-33 147.1 267 36.0
MELO3C023518.2 Cucumis melo HOM05D004413 ORTHO05D005199 1.1e-32 145.6 265 35.1
Dinv43918 Davidia involucrata HOM05D004413 ORTHO05D005199 1.4e-32 145.2 241 35.3
MCO07G333 Micromonas commoda HOM05D004413 ORTHO05D005199 4.0e-32 143.7 297 36.0
Os01g0962500 Oryza sativa ssp. japonica HOM05D004413 ORTHO05D005199 1.5e-31 141.7 269 34.6
Rhsim01G0132100 Rhododendron simsii HOM05D004413 ORTHO05D005199 2.7e-28 131.0 334 29.0
Hma1.2p1_0038F.1_g024150 Hydrangea macrophylla HOM05D004413 ORTHO05D005199 7.8e-28 129.4 260 33.8
Lj9A624G21 Lonicera japonica HOM05D004413 ORTHO05D005199 1.7e-27 128.3 275 31.6
unitig_578.g16701 Utricularia gibba HOM05D004413 ORTHO05D005199 4.3e-26 123.6 243 32.9
GSVIVG01027705001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.6e-20 105.1 147 38.8
DCAR_015691 Daucus carota HOM05D004413 ORTHO05D005199 2.1e-20 104.8 147 38.1
Sopen01g033580 Solanum pennellii HOM05D004413 ORTHO05D005199 3.9e-19 100.5 137 38.7
PGSC0003DMG400006318 Solanum tuberosum HOM05D004413 ORTHO05D005199 8.7e-19 99.4 193 33.7
SGA_v2.0_scaffold4G02237 Striga asiatica HOM05D004413 ORTHO05D005199 1.3e-17 95.5 189 31.7
SEGI_10444 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 4.8e-17 93.6 160 34.4
SEGI_03996 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 2.4e-16 91.3 160 33.1
Actinidia21570 Actinidia chinensis HOM05D004413 ORTHO05D005199 6.9e-16 89.7 94 44.7
Actinidia15863 Actinidia chinensis HOM05D004413 ORTHO05D005199 1.5e-15 88.6 94 47.9
GSVIVG01027710001 Vitis vinifera HOM05D004413 ORTHO05D005199 8.4e-14 82.8 96 44.8
A08p37250 Brassica napus HOM05D004413 ORTHO05D005199 1.2e-12 79.0 67 53.7
Manes.10G149900 Manihot esculenta HOM05D000073 ORTHO05D000033 5.1e-11 73.6 67 52.2
HanXRQChr11g0328201 Helianthus annuus HOM05D004413 ORTHO05D005199 9.6e-10 69.3 75 48.0
Actinidia21569 Actinidia chinensis HOM05D004413 ORTHO05D005199 1.3e-09 68.9 125 34.4
Sopen01g033590 Solanum pennellii HOM05D004413 ORTHO05D005199 3.7e-09 67.4 128 33.6
Aa31LG1G19980 Aethionema arabicum HOM05D004413 ORTHO05D005199 3.8e-06 57.4 88 37.5


User provided reference genes

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