Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre01.g044150 Chlamydomonas reinhardtii HOM05D006341 ORTHO05D000377 0.0e+00 1290.4 816 100.0
AagrBONN_evm.TU.Sc2ySwM_228.2682 Anthoceros agrestis HOM05D006341 ORTHO05D000377 1.1e-63 249.2 381 37.0
SMO169G0079 Selaginella moellendorffii HOM05D006341 ORTHO05D000377 9.1e-63 246.1 383 40.5
Pp3c8_21040 Physcomitrium patens HOM05D006341 ORTHO05D000377 5.9e-62 243.4 413 36.8
Os02g0121200 Oryza sativa ssp. japonica HOM05D006341 ORTHO05D000377 7.7e-62 243.0 404 36.4
Mapoly0085s0033 Marchantia polymorpha HOM05D006341 ORTHO05D000377 1.7e-61 241.9 428 34.6
ATR0810G159 Amborella trichopoda HOM05D006341 ORTHO05D000377 4.2e-60 237.3 400 35.5
Aa31LG7G15600 Aethionema arabicum HOM05D006341 ORTHO05D000377 1.2e-59 235.7 407 36.9
Manes.11G082657 Manihot esculenta HOM05D006341 ORTHO05D000377 1.6e-59 235.3 391 35.5
Ah.01g008830 Amaranthus hybridus HOM05D006341 ORTHO05D000377 2.8e-59 234.6 404 35.6
Nn7g37263 Nelumbo nucifera HOM05D006341 ORTHO05D000377 2.8e-59 234.6 389 36.5
Sp4g00210 Schrenkiella parvula HOM05D006341 ORTHO05D000377 3.6e-59 234.2 394 37.3
Eucgr.G01768 Eucalyptus grandis HOM05D006341 ORTHO05D000377 4.7e-59 233.8 390 36.7
HanXRQChr17g0553851 Helianthus annuus HOM05D006341 ORTHO05D000377 8.0e-59 233.0 387 34.9
THA.LOC104807791 Tarenaya hassleriana HOM05D006341 ORTHO05D000377 8.0e-59 233.0 403 36.2
Peaxi162Scf00434g00625 Petunia axillaris HOM05D006341 ORTHO05D000377 1.0e-58 232.6 401 35.9
BcaB06g27766 Brassica carinata HOM05D006341 ORTHO05D000377 1.4e-58 232.3 392 35.2
Gohir.D12G033900 Gossypium hirsutum HOM05D006341 ORTHO05D000377 1.8e-58 231.9 394 35.0
TAR381G0106 Trochodendron aralioides HOM05D006341 ORTHO05D000377 1.8e-58 231.9 391 35.8
Cc06_g16120 Coffea canephora HOM05D006341 ORTHO05D000377 3.0e-58 231.1 400 36.0
Ciclev10028267m.g Citrus clementina HOM05D006341 ORTHO05D000377 4.0e-58 230.7 394 35.3
Haze_02181 Corylus avellana HOM05D006341 ORTHO05D000377 6.8e-58 229.9 391 36.1
Duzib132G0346 Durio zibethinus HOM05D006341 ORTHO05D000377 6.8e-58 229.9 392 34.9
Lj4g0012983 Lotus japonicus HOM05D006341 ORTHO05D000377 6.8e-58 229.9 383 36.0
EL10Ac9g21414 Beta vulgaris HOM05D006341 ORTHO05D000377 8.9e-58 229.6 390 35.9
Ca_18243_v3 Cicer arietinum L. HOM05D006341 ORTHO05D000377 8.9e-58 229.6 383 35.5
Gorai.008G034900 Gossypium raimondii HOM05D006341 ORTHO05D000377 8.9e-58 229.6 394 35.0
Carub.0003s3491 Capsella rubella HOM05D006341 ORTHO05D000377 1.2e-57 229.2 385 35.8
A04p15870 Brassica napus HOM05D006341 ORTHO05D000377 1.5e-57 228.8 380 35.0
RcHm_v2.0_Chr6g0244411 Rosa chinensis HOM05D006341 ORTHO05D000377 2.6e-57 228.0 384 35.9
Haze_02174 Corylus avellana HOM05D006341 ORTHO05D000377 3.4e-57 227.6 391 36.1
MELO3C013369.2 Cucumis melo HOM05D006341 ORTHO05D000377 3.4e-57 227.6 398 36.4
MBI02_g27965_MAGBIO Magnolia biondii HOM05D006341 ORTHO05D000377 4.4e-57 227.3 387 35.7
Sc08g0003080 Simmondsia chinensis HOM05D006341 ORTHO05D000377 4.4e-57 227.3 397 36.0
Aqoxy5G01641 Aquilegia oxysepala HOM05D006341 ORTHO05D000377 5.7e-57 226.9 392 35.5
CAN.G134.236 Capsicum annuum HOM05D006341 ORTHO05D000377 9.8e-57 226.1 382 35.9
Potri.004G172100 Populus trichocarpa HOM05D006341 ORTHO05D000377 9.8e-57 226.1 395 34.7
Lsat_1_v5_gn_8_124961 Lactuca sativa HOM05D006341 ORTHO05D000377 1.3e-56 225.7 388 34.0
Psat7g085760 Pisum sativum HOM05D006341 ORTHO05D000377 1.3e-56 225.7 388 35.1
Oeu006673.1 Olea europaea HOM05D006341 ORTHO05D000377 1.7e-56 225.3 401 35.2
Prupe.8G162700 Prunus persica HOM05D006341 ORTHO05D000377 1.7e-56 225.3 389 36.5
TWI53G1223 Tripterygium wilfordii HOM05D006341 ORTHO05D000377 1.7e-56 225.3 391 35.8
Gohir.A12G038400 Gossypium hirsutum HOM05D006341 ORTHO05D000377 2.2e-56 224.9 392 34.9
Nitab4.5_0001903g0070 Nicotiana tabacum HOM05D006341 ORTHO05D000377 2.2e-56 224.9 403 35.5
Sabra04G0114400 Salix brachista HOM05D006341 ORTHO05D000377 2.2e-56 224.9 409 33.5
Atru.chr5.3271 Acer truncatum HOM05D006341 ORTHO05D000377 3.7e-56 224.2 391 34.8
AL4G10160 Arabidopsis lyrata HOM05D006341 ORTHO05D000377 3.7e-56 224.2 402 34.1
CsaV3_7G000880 Cucumis sativus L. HOM05D006341 ORTHO05D000377 3.7e-56 224.2 393 35.4
arahy.Tifrunner.gnm1.ann1.UN7M5W Arachis hypogaea HOM05D006341 ORTHO05D000377 4.9e-56 223.8 385 35.8
CSS0004411 Camellia sinensis var. sinensis HOM05D006341 ORTHO05D000377 4.9e-56 223.8 402 33.6
Nitab4.5_0001423g0020 Nicotiana tabacum HOM05D006341 ORTHO05D000377 4.9e-56 223.8 388 36.3
MSTRG.16892 Avicennia marina HOM05D006341 ORTHO05D000377 6.3e-56 223.4 410 34.9
Solyc01g098460.4 Solanum lycopersicum HOM05D006341 ORTHO05D000377 6.3e-56 223.4 393 34.9
Hma1.2p1_0032F.1_g019570 Hydrangea macrophylla HOM05D006341 ORTHO05D000377 8.3e-56 223.0 387 35.9
SEGI_13829 Sequoiadendron giganteum HOM05D006341 ORTHO05D000377 8.3e-56 223.0 404 34.4
SEGI_22420 Sequoiadendron giganteum HOM05D006341 ORTHO05D000377 8.3e-56 223.0 404 34.4
Thhalv10000146m.g Eutrema salsugineum HOM05D006341 ORTHO05D000377 1.1e-55 222.6 403 35.0
FvH4_2g01620 Fragaria vesca HOM05D006341 ORTHO05D000377 1.1e-55 222.6 388 36.1
FAN24G0408 Fragaria x ananassa HOM05D006341 ORTHO05D000377 1.1e-55 222.6 388 36.1
Hund06416 Selenicereus undatus HOM05D006341 ORTHO05D000377 1.1e-55 222.6 395 35.9
ECA233G1460 Erigeron canadensis HOM05D006341 ORTHO05D000377 1.4e-55 222.2 390 35.4
QL11p049167 Quercus lobata HOM05D006341 ORTHO05D000377 1.4e-55 222.2 382 34.3
C04p50300 Brassica napus HOM05D006341 ORTHO05D000377 1.8e-55 221.9 381 35.4
BolC4t26628H Brassica oleracea HOM05D006341 ORTHO05D000377 1.8e-55 221.9 381 35.4
CDE05G1540 Ceratophyllum demersum HOM05D006341 ORTHO05D000377 1.8e-55 221.9 404 33.7
Dinv04950 Davidia involucrata HOM05D006341 ORTHO05D000377 1.8e-55 221.9 381 34.9
Lj5A183G92 Lonicera japonica HOM05D006341 ORTHO05D000377 1.8e-55 221.9 411 34.1
AT2G21070 Arabidopsis thaliana HOM05D006341 ORTHO05D000377 2.4e-55 221.5 389 35.0
FAN20G2467 Fragaria x ananassa HOM05D006341 ORTHO05D000377 3.1e-55 221.1 393 34.6
PGR042G0052 Punica granatum HOM05D006341 ORTHO05D000377 3.1e-55 221.1 394 34.3
Sed0009186 Sechium edule HOM05D006341 ORTHO05D000377 3.1e-55 221.1 393 36.4
Sopen01g042030 Solanum pennellii HOM05D006341 ORTHO05D000377 3.1e-55 221.1 383 35.2
MD05G1118100 Malus domestica HOM05D006341 ORTHO05D000377 4.1e-55 220.7 382 36.1
Thecc.02G064100 Theobroma cacao HOM05D006341 ORTHO05D000377 4.1e-55 220.7 392 33.7
BraA04t17219Z Brassica rapa HOM05D006341 ORTHO05D000377 5.4e-55 220.3 380 33.7
SGA_v2.0_scaffold58G20406 Striga asiatica HOM05D006341 ORTHO05D000377 5.4e-55 220.3 397 34.0
CARHR111910 Cardamine hirsuta HOM05D006341 ORTHO05D000377 7.0e-55 219.9 392 35.5
AUR62010072 Chenopodium quinoa HOM05D006341 ORTHO05D000377 7.0e-55 219.9 400 34.5
RcHm_v2.0_Chr6g0244441 Rosa chinensis HOM05D006341 ORTHO05D000377 7.0e-55 219.9 380 36.1
COL.COLO4_17179 Corchorus olitorius HOM05D006341 ORTHO05D000377 9.2e-55 219.5 392 34.4
TPR.G31245 Trifolium pratense HOM05D006341 ORTHO05D000377 9.2e-55 219.5 381 34.1
COL.COLO4_17298 Corchorus olitorius HOM05D006341 ORTHO05D000377 1.2e-54 219.2 392 34.4
SalBow1G4312 Salvia bowleyana HOM05D006341 ORTHO05D000377 1.2e-54 219.2 392 34.7
Actinidia00608 Actinidia chinensis HOM05D006341 ORTHO05D000377 1.6e-54 218.8 389 33.9
vmacro02264 Vaccinium macrocarpon HOM05D006341 ORTHO05D000377 2.0e-54 218.4 436 33.0
arahy.Tifrunner.gnm1.ann1.MR7L4V Arachis hypogaea HOM05D006341 ORTHO05D000377 2.7e-54 218.0 384 35.4
CANSAT25G3024 Cannabis sativa HOM05D006341 ORTHO05D000377 3.5e-54 217.6 386 34.5
HPP92_014019 Vanilla planifolia HOM05D006341 ORTHO05D000377 3.5e-54 217.6 387 35.1
Migut.B00102 Erythranthe guttata HOM05D006341 ORTHO05D000377 4.5e-54 217.2 409 32.5
unitig_60.g25823 Utricularia gibba HOM05D006341 ORTHO05D000377 2.9e-53 214.5 385 34.3
Glyma.05G133200 Glycine max HOM05D006341 ORTHO05D000377 5.6e-52 210.3 376 33.5
Glyma.08G087700 Glycine max HOM05D006341 ORTHO05D000377 2.1e-51 208.4 391 34.3
MCO01G168 Micromonas commoda HOM05D006341 ORTHO05D000377 3.6e-51 207.6 388 35.1
VMungo0251G3227 Vigna mungo HOM05D006341 ORTHO05D000377 1.8e-50 205.3 376 33.8
Lalb_Chr13g0293551 Lupinus albus HOM05D006341 ORTHO05D000377 2.6e-49 201.4 379 36.4
SHI05717 Sapria himalayana HOM05D006341 ORTHO05D000377 8.3e-48 196.4 392 33.2
Atru.chr5.3277 Acer truncatum HOM05D006341 ORTHO05D000377 5.4e-47 193.7 391 32.2
Potri.009G131700 Populus trichocarpa HOM05D006341 ORTHO05D000377 7.8e-46 189.9 350 34.0
Rhsim11G0190600 Rhododendron simsii HOM05D006341 ORTHO05D000377 1.5e-44 185.7 389 33.2
Dinv39489 Davidia involucrata HOM05D006341 ORTHO05D000377 5.6e-44 183.7 364 32.4
GSVIVG01024058001 Vitis vinifera HOM05D006341 ORTHO05D000377 1.6e-43 182.2 391 31.7
QL11p048584 Quercus lobata HOM05D006341 ORTHO05D000377 2.6e-41 174.9 324 32.4
ClCG02G004230 Citrullus lanatus HOM05D006341 ORTHO05D000377 3.4e-41 174.5 412 31.1
Phvul.002G189600 Phaseolus vulgaris HOM05D006341 ORTHO05D000377 3.2e-39 167.9 376 30.1
PRCOL_00006207 Prasinoderma coloniale HOM05D006341 ORTHO05D000377 5.4e-39 167.2 418 37.1
Zm00001eb208320 Zea mays HOM05D006341 ORTHO05D000377 1.6e-38 165.6 316 32.3
Atru.chr5.3221 Acer truncatum HOM05D006341 ORTHO05D000377 1.5e-36 159.1 323 33.1
Ca_18241_v3 Cicer arietinum L. HOM05D006341 ORTHO05D000377 1.2e-30 139.4 321 30.2
CBR_g23939 Chara braunii HOM05D006341 ORTHO05D000377 6.2e-27 127.1 202 39.6
Nitab4.5_0008354g0020 Nicotiana tabacum HOM05D006341 ORTHO05D000377 8.1e-27 126.7 277 33.2
PGSC0003DMG401028564 Solanum tuberosum HOM05D006341 ORTHO05D000377 1.8e-26 125.6 138 44.9
FAN22G0308 Fragaria x ananassa HOM05D003409 ORTHO05D004015 2.4e-26 125.2 344 27.0
Cpa.g.sc37.173 Carica papaya HOM05D006341 ORTHO05D000377 3.1e-26 124.8 139 48.2
CiPaw.06G124100 Carya illinoinensis HOM05D006341 ORTHO05D000377 1.3e-24 119.4 107 48.6
Carub.0004s0010 Capsella rubella HOM05D006341 ORTHO05D000377 1.6e-22 112.5 388 26.8
Sabra09G0102100 Salix brachista HOM05D006341 ORTHO05D000377 2.1e-14 85.5 88 43.2
FAN07G1625 Fragaria x ananassa HOM05D006341 ORTHO05D000377 1.1e-10 73.2 72 43.1
Oeu063293.1 Olea europaea HOM05D006341 ORTHO05D000377 3.5e-06 58.2 128 32.8


User provided reference genes

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