Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre01.g040050 Chlamydomonas reinhardtii HOM05D004412 ORTHO05D005316 9.7e-184 647.1 359 100.0
Pp3c26_15150 Physcomitrium patens HOM05D004412 ORTHO05D005316 4.7e-45 186.4 302 37.4
Os05g0367400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 5.2e-44 183.0 332 34.0
A08p37550 Brassica napus HOM05D004412 ORTHO05D005316 8.3e-42 175.6 315 34.0
Zm00001eb285500 Zea mays HOM05D004412 ORTHO05D005316 8.3e-42 175.6 286 34.6
Zm00001eb142350 Zea mays HOM05D004412 ORTHO05D005316 1.1e-41 175.3 329 34.0
THA.LOC104825974 Tarenaya hassleriana HOM05D004412 ORTHO05D005316 1.4e-41 174.9 319 33.9
HPP92_013717 Vanilla planifolia HOM05D004412 ORTHO05D005316 1.4e-41 174.9 298 35.2
A10p01550 Brassica napus HOM05D000147 ORTHO05D001254 1.8e-41 174.5 323 33.7
Gorai.004G052600 Gossypium raimondii HOM05D004412 ORTHO05D005316 1.8e-41 174.5 304 34.5
BcaC07g36986 Brassica carinata HOM05D004412 ORTHO05D005316 3.1e-41 173.7 314 33.4
BcaC07g36988 Brassica carinata HOM05D004412 ORTHO05D005316 3.1e-41 173.7 314 33.4
BraA10t42430Z Brassica rapa HOM05D000147 ORTHO05D001254 3.1e-41 173.7 323 33.7
Aa31LG1G9690 Aethionema arabicum HOM05D004412 ORTHO05D005316 7.0e-41 172.6 307 32.2
BcaB03g13500 Brassica carinata HOM05D004412 ORTHO05D005316 7.0e-41 172.6 322 33.5
BcaC05g24629 Brassica carinata HOM05D004412 ORTHO05D005316 7.0e-41 172.6 323 33.7
C05p01550 Brassica napus HOM05D000147 ORTHO05D001254 7.0e-41 172.6 323 33.7
CDE05G1992 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 7.0e-41 172.6 304 34.5
BcaB03g15756 Brassica carinata HOM05D004412 ORTHO05D005316 1.2e-40 171.8 306 34.3
C08p00300 Brassica napus HOM05D004412 ORTHO05D005316 1.2e-40 171.8 314 33.1
Thhalv10008492m.g Eutrema salsugineum HOM05D004412 ORTHO05D005316 1.2e-40 171.8 309 33.7
Gohir.A08G042700 Gossypium hirsutum HOM05D004412 ORTHO05D005316 1.2e-40 171.8 304 34.2
Pp3c4_27720 Physcomitrium patens HOM05D004412 ORTHO05D005316 1.2e-40 171.8 301 36.2
Duzib211G0511 Durio zibethinus HOM05D004412 ORTHO05D005316 1.6e-40 171.4 305 35.7
Sp1g01880 Schrenkiella parvula HOM05D004412 ORTHO05D005316 1.6e-40 171.4 309 33.7
TAR362G0097 Trochodendron aralioides HOM05D004412 ORTHO05D005316 1.6e-40 171.4 309 34.3
AT1G02880 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 2.0e-40 171.0 304 33.9
Gohir.D08G052500 Gossypium hirsutum HOM05D004412 ORTHO05D005316 2.0e-40 171.0 304 34.2
AT2G44750 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 2.7e-40 170.6 320 33.8
Thecc.01G297900 Theobroma cacao HOM05D004412 ORTHO05D005316 2.7e-40 170.6 309 34.0
RcHm_v2.0_Chr6g0293711 Rosa chinensis HOM05D004412 ORTHO05D005316 4.5e-40 169.9 318 34.6
ATR0693G457 Amborella trichopoda HOM05D004412 ORTHO05D005316 5.9e-40 169.5 315 34.3
TAR633G0484 Trochodendron aralioides HOM05D004412 ORTHO05D005316 5.9e-40 169.5 309 33.7
CDE11G0241 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 7.7e-40 169.1 302 34.4
Migut.D00201 Erythranthe guttata HOM05D004412 ORTHO05D005316 1.0e-39 168.7 322 34.2
Carub.0007s3652 Capsella rubella HOM05D004412 ORTHO05D005316 1.3e-39 168.3 319 32.3
Cc04_g10720 Coffea canephora HOM05D004412 ORTHO05D005316 1.3e-39 168.3 324 33.6
MD11G1305700 Malus domestica HOM05D004412 ORTHO05D005316 1.7e-39 167.9 320 34.7
BolC5t28933H Brassica oleracea HOM05D004412 ORTHO05D005316 2.2e-39 167.5 326 33.4
BolC8t46831H Brassica oleracea HOM05D004412 ORTHO05D005316 2.2e-39 167.5 314 33.4
Carub.0001s0201 Capsella rubella HOM05D004412 ORTHO05D005316 2.2e-39 167.5 319 32.3
Duzib138G0322 Durio zibethinus HOM05D004412 ORTHO05D005316 2.2e-39 167.5 305 34.4
PSO782G2310 Papaver somniferum HOM05D004412 ORTHO05D005316 2.2e-39 167.5 321 34.6
PGR119G0650 Punica granatum HOM05D004412 ORTHO05D005316 2.2e-39 167.5 324 33.0
Sc05g0004150 Simmondsia chinensis HOM05D004412 ORTHO05D005316 2.2e-39 167.5 314 34.7
vmacro02463 Vaccinium macrocarpon HOM05D004412 ORTHO05D005316 2.2e-39 167.5 306 35.3
QL12p027258 Quercus lobata HOM05D004412 ORTHO05D005316 2.9e-39 167.2 298 35.9
Glyma.03G213500 Glycine max HOM05D004412 ORTHO05D005316 3.8e-39 166.8 320 33.4
Rhsim13G0011700 Rhododendron simsii HOM05D004412 ORTHO05D005316 5.0e-39 166.4 317 33.1
FvH4_2g25500 Fragaria vesca HOM05D004412 ORTHO05D005316 6.5e-39 166.0 318 34.0
Lalb_Chr18g0047081 Lupinus albus HOM05D004412 ORTHO05D005316 6.5e-39 166.0 307 34.5
AL1G12300 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 8.5e-39 165.6 303 32.3
arahy.Tifrunner.gnm1.ann1.V4DRNI Arachis hypogaea HOM05D004412 ORTHO05D005316 8.5e-39 165.6 301 34.6
Hma1.2p1_0491F.1_g164430 Hydrangea macrophylla HOM05D004412 ORTHO05D005316 8.5e-39 165.6 298 34.9
Prupe.8G259100 Prunus persica HOM05D004412 ORTHO05D005316 8.5e-39 165.6 315 33.3
COL.COLO4_23368 Corchorus olitorius HOM05D004412 ORTHO05D005316 1.1e-38 165.2 319 34.2
Eucgr.H01156 Eucalyptus grandis HOM05D004412 ORTHO05D005316 1.1e-38 165.2 331 32.6
GSVIVG01027984001 Vitis vinifera HOM05D004412 ORTHO05D005316 1.1e-38 165.2 304 35.2
arahy.Tifrunner.gnm1.ann1.E95WBF Arachis hypogaea HOM05D004412 ORTHO05D005316 1.9e-38 164.5 321 34.3
arahy.Tifrunner.gnm1.ann1.K6REY5 Arachis hypogaea HOM05D004412 ORTHO05D005316 2.5e-38 164.1 321 34.3
arahy.Tifrunner.gnm1.ann1.TC9I43 Arachis hypogaea HOM05D004412 ORTHO05D005316 2.5e-38 164.1 301 34.2
Ciclev10021279m.g Citrus clementina HOM05D004412 ORTHO05D005316 2.5e-38 164.1 317 34.4
ECA247G0114 Erigeron canadensis HOM05D004412 ORTHO05D005316 2.5e-38 164.1 301 35.5
TPR.G9643 Trifolium pratense HOM05D004412 ORTHO05D005316 3.2e-38 163.7 298 34.2
PGSC0003DMG401011372 Solanum tuberosum HOM05D004412 ORTHO05D005316 5.5e-38 162.9 306 33.3
DCAR_002821 Daucus carota HOM05D004412 ORTHO05D005316 7.2e-38 162.5 298 35.2
FAN24G2667 Fragaria x ananassa HOM05D004412 ORTHO05D005316 7.2e-38 162.5 320 34.1
HanXRQChr15g0465781 Helianthus annuus HOM05D004412 ORTHO05D005316 7.2e-38 162.5 314 33.8
Os01g0356500 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 7.2e-38 162.5 306 32.4
PSO302G0109 Papaver somniferum HOM05D004412 ORTHO05D005316 7.2e-38 162.5 319 33.9
Oeu032104.1 Olea europaea HOM05D004412 ORTHO05D005316 9.4e-38 162.2 310 33.2
TWI14G0137 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 9.4e-38 162.2 309 33.3
HanXRQChr10g0284561 Helianthus annuus HOM05D004412 ORTHO05D005316 1.2e-37 161.8 299 35.1
Phvul.001G206100 Phaseolus vulgaris HOM05D004412 ORTHO05D005316 1.2e-37 161.8 298 33.6
DCAR_005799 Daucus carota HOM05D004412 ORTHO05D005316 1.6e-37 161.4 303 33.3
PSO210G7114 Papaver somniferum HOM05D004412 ORTHO05D005316 1.6e-37 161.4 319 33.9
AagrBONN_evm.TU.Sc2ySwM_362.2756 Anthoceros agrestis HOM05D004412 ORTHO05D005316 2.1e-37 161.0 303 33.0
MD03G1285900 Malus domestica HOM05D004412 ORTHO05D005316 2.1e-37 161.0 319 32.9
Potri.002G205800 Populus trichocarpa HOM05D004412 ORTHO05D005316 2.1e-37 161.0 318 34.0
MSTRG.18165 Avicennia marina HOM05D004412 ORTHO05D005316 2.7e-37 160.6 304 33.9
Ca_09149_v3 Cicer arietinum L. HOM05D004412 ORTHO05D005316 2.7e-37 160.6 298 32.9
Gohir.D12G135400 Gossypium hirsutum HOM05D004412 ORTHO05D005316 2.7e-37 160.6 304 32.9
Gorai.008G146400 Gossypium raimondii HOM05D004412 ORTHO05D005316 2.7e-37 160.6 304 33.6
CsaV3_7G029140 Cucumis sativus L. HOM05D004412 ORTHO05D005316 3.6e-37 160.2 326 34.0
Potri.014G130900 Populus trichocarpa HOM05D004412 ORTHO05D005316 3.6e-37 160.2 299 33.8
Sopen09g029800 Solanum pennellii HOM05D004412 ORTHO05D005316 3.6e-37 160.2 306 33.7
Dinv19708 Davidia involucrata HOM05D004412 ORTHO05D005316 4.7e-37 159.8 309 32.7
CANSAT25G2200 Cannabis sativa HOM05D004412 ORTHO05D005316 6.1e-37 159.5 307 33.6
CANSAT25G3274 Cannabis sativa HOM05D004412 ORTHO05D005316 6.1e-37 159.5 307 33.6
Lj2C1191G7 Lonicera japonica HOM05D004412 ORTHO05D005316 6.1e-37 159.5 316 33.5
Medtr7g108680 Medicago truncatula HOM05D004412 ORTHO05D005316 6.1e-37 159.5 298 33.9
PSO832G3509 Papaver somniferum HOM05D004412 ORTHO05D005316 6.1e-37 159.5 299 35.5
Psat0s3188g0040 Pisum sativum HOM05D004412 ORTHO05D005316 8.0e-37 159.1 298 33.9
Lsat_1_v5_gn_9_901 Lactuca sativa HOM05D004412 ORTHO05D005316 1.0e-36 158.7 298 34.2
SMO119G0015 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 1.4e-36 158.3 293 37.2
CAN.G339.23 Capsicum annuum HOM05D004412 ORTHO05D005316 1.8e-36 157.9 301 34.2
Hund18137 Selenicereus undatus HOM05D004412 ORTHO05D005316 2.3e-36 157.5 323 32.5
Glyma.19G210300 Glycine max HOM05D004412 ORTHO05D005316 4.0e-36 156.8 329 31.6
Manes.05G063600 Manihot esculenta HOM05D004412 ORTHO05D005316 4.0e-36 156.8 317 31.9
TWI59G0713 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 5.2e-36 156.4 309 33.0
Haze_04907 Corylus avellana HOM05D004412 ORTHO05D005316 6.8e-36 156.0 318 33.6
Cfa005939 Carpinus fangiana HOM05D004412 ORTHO05D005316 8.8e-36 155.6 318 33.3
CBR_g34735 Chara braunii HOM05D004412 ORTHO05D000002 8.8e-36 155.6 193 40.9
Lj1g0006783 Lotus japonicus HOM05D004412 ORTHO05D005316 1.5e-35 154.8 298 34.6
Atru.chr5.1172 Acer truncatum HOM05D004412 ORTHO05D005316 4.4e-35 153.3 298 32.9
Duzib211G0323 Durio zibethinus HOM05D004412 ORTHO05D005316 5.7e-35 152.9 190 44.2
SMO304G0134 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 5.7e-35 152.9 187 42.2
Solyc09g074970.3 Solanum lycopersicum HOM05D004412 ORTHO05D005316 5.7e-35 152.9 308 33.1
Hund05414 Selenicereus undatus HOM05D004412 ORTHO05D005316 9.8e-35 152.1 282 34.4
Mapoly0113s0040 Marchantia polymorpha HOM05D004412 ORTHO05D005316 2.8e-34 150.6 297 30.6
Zm00001eb131550 Zea mays HOM05D004412 ORTHO05D005316 2.8e-34 150.6 320 30.9
CSS0010827 Camellia sinensis var. sinensis HOM05D004412 ORTHO05D005316 3.7e-34 150.2 299 35.5
BraA08t35652Z Brassica rapa HOM05D004412 ORTHO05D005316 6.3e-34 149.4 315 32.4
MCO04G072 Micromonas commoda HOM05D004412 ORTHO05D005316 6.3e-34 149.4 310 32.3
SalBow3G3296 Salvia bowleyana HOM05D002199 ORTHO05D007829 6.3e-34 149.4 280 35.0
Peaxi162Scf00001g04911 Petunia axillaris HOM05D004412 ORTHO05D005316 1.4e-33 148.3 313 32.9
Sabra14G0097400 Salix brachista HOM05D004412 ORTHO05D005316 4.1e-33 146.7 290 33.8
SGA_v2.0_scaffold1G00376 Striga asiatica HOM05D004412 ORTHO05D005316 5.4e-33 146.4 297 33.3
Manes.01G217400 Manihot esculenta HOM05D004412 ORTHO05D005316 9.1e-33 145.6 284 32.7
EL10Ac2g03462 Beta vulgaris HOM05D004412 ORTHO05D005316 1.6e-32 144.8 313 31.9
ClCG09G005980 Citrullus lanatus HOM05D004412 ORTHO05D005316 1.6e-32 144.8 192 42.2
SGA_v2.0_scaffold2G01402 Striga asiatica HOM05D002199 ORTHO05D007829 2.0e-32 144.4 298 32.2
Gohir.A12G131600 Gossypium hirsutum HOM05D004412 ORTHO05D005316 4.5e-32 143.3 189 41.3
Aqoxy5G00729 Aquilegia oxysepala HOM05D004412 ORTHO05D005316 1.3e-31 141.7 280 32.9
MELO3C016014.2 Cucumis melo HOM05D004412 ORTHO05D005316 2.9e-31 140.6 193 41.5
Medtr8g058563 Medicago truncatula HOM05D004412 ORTHO05D005316 2.9e-31 140.6 194 41.2
AUR62008659 Chenopodium quinoa HOM05D004412 ORTHO05D005316 3.8e-31 140.2 189 40.7
Nn4g25831 Nelumbo nucifera HOM05D004412 ORTHO05D005316 1.1e-30 138.7 280 31.1
Sed0017881 Sechium edule HOM05D004412 ORTHO05D005316 1.1e-30 138.7 189 40.2
CiPaw.07G106900 Carya illinoinensis HOM05D004412 ORTHO05D005316 1.9e-30 137.9 189 40.2
MBI19_g12143_MAGBIO Magnolia biondii HOM05D004412 ORTHO05D005316 1.9e-30 137.9 334 32.9
AUR62033109 Chenopodium quinoa HOM05D000147 ORTHO05D001254 2.5e-30 137.5 192 41.1
PRCOL_00001679 Prasinoderma coloniale HOM05D004412 ORTHO05D005316 7.2e-30 136.0 341 32.0
QL12p026683 Quercus lobata HOM05D004412 ORTHO05D005316 2.8e-29 134.0 260 34.6
SEGI_10498 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 4.0e-28 130.2 158 46.2
Dinv33040 Davidia involucrata HOM05D004412 ORTHO05D005316 6.8e-28 129.4 176 40.9
CARHR002230 Cardamine hirsuta HOM05D004412 ORTHO05D005316 1.5e-27 128.3 318 28.6
Actinidia32228 Actinidia chinensis HOM05D004412 ORTHO05D005316 4.4e-27 126.7 272 32.7
Sabra02G0153500 Salix brachista HOM05D004412 ORTHO05D005316 1.2e-24 118.6 155 41.9
PGR119G0381 Punica granatum HOM05D004412 ORTHO05D005316 9.5e-22 109.0 145 40.0
unitig_0.g656 Utricularia gibba HOM05D004412 ORTHO05D005316 2.1e-21 107.8 229 31.0
Nitab4.5_0005515g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 2.4e-17 94.4 125 44.8
Nitab4.5_0002469g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.2e-16 92.0 318 28.6
Nitab4.5_0001756g0260 Nicotiana tabacum HOM05D004412 ORTHO05D005316 7.3e-14 82.8 93 48.4
SHI29035 Sapria himalayana HOM05D004412 ORTHO05D005316 8.9e-12 75.9 121 39.7
Carub.0033s0005 Capsella rubella HOM05D004412 ORTHO05D005316 2.0e-11 74.7 176 27.3
Lj1g0003703 Lotus japonicus HOM05D004412 ORTHO05D005316 3.7e-10 70.5 173 27.2
Nitab4.5_0001756g0180 Nicotiana tabacum HOM05D004412 ORTHO05D005316 3.7e-10 70.5 192 29.7
SEGI_14482 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 6.4e-10 69.7 152 30.9
SMO304G0017 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 1.9e-09 68.2 211 25.6
Cc01_g20710 Coffea canephora HOM05D004412 ORTHO05D005316 2.7e-08 64.3 97 41.2
Nitab4.5_0000619g0170 Nicotiana tabacum HOM05D004412 ORTHO05D005316 4.6e-08 63.5 168 28.0
SMO304G0108 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 7.8e-08 62.8 211 26.1
FAN16G1537 Fragaria x ananassa HOM05D004412 ORTHO05D005316 1.1e-06 58.9 93 39.8
SHI29034 Sapria himalayana HOM05D000105 ORTHO05D000023 5.6e-06 56.6 47 57.4


User provided reference genes

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