Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre01.g008850 Chlamydomonas reinhardtii HOM05D001088 ORTHO05D002099 0.0e+00 3603.1 3995 100.0
Migut.H02396 Erythranthe guttata HOM05D001088 ORTHO05D002099 1.7e-13 84.7 325 31.1
SalBow6G4166 Salvia bowleyana HOM05D001088 ORTHO05D002099 1.9e-12 81.3 324 29.3
CAN.G1227.16 Capsicum annuum HOM05D001088 ORTHO05D002099 7.2e-12 79.3 321 28.3
Nitab4.5_0000312g0030 Nicotiana tabacum HOM05D001088 ORTHO05D002099 7.2e-12 79.3 323 28.2
Peaxi162Scf00174g00148 Petunia axillaris HOM05D001088 ORTHO05D002099 7.2e-12 79.3 321 28.3
Phvul.003G220900 Phaseolus vulgaris HOM05D001088 ORTHO05D002099 7.2e-12 79.3 322 26.7
CAN.G1227.19 Capsicum annuum HOM05D001088 ORTHO05D002099 9.5e-12 79.0 319 27.6
AUR62007519 Chenopodium quinoa HOM05D001088 ORTHO05D002099 9.5e-12 79.0 325 28.3
SGA_v2.0_scaffold146G36147 Striga asiatica HOM05D001088 ORTHO05D002099 9.5e-12 79.0 324 28.4
Cc08_g12380 Coffea canephora HOM05D001088 ORTHO05D002099 1.2e-11 78.6 317 30.3
THA.LOC104806723 Tarenaya hassleriana HOM05D001088 ORTHO05D002099 1.2e-11 78.6 324 27.5
HanXRQChr16g0511621 Helianthus annuus HOM05D001088 ORTHO05D002099 1.6e-11 78.2 324 27.5
Sopen08g003300 Solanum pennellii HOM05D001088 ORTHO05D002099 2.1e-11 77.8 321 27.7
PGSC0003DMG400012505 Solanum tuberosum HOM05D001088 ORTHO05D002099 2.1e-11 77.8 321 27.7
SGA_v2.0_scaffold120G32890 Striga asiatica HOM05D001088 ORTHO05D002099 2.1e-11 77.8 321 29.6
Ciclev10018486m.g Citrus clementina HOM05D001088 ORTHO05D002099 3.6e-11 77.0 324 27.5
Solyc08g007360.3 Solanum lycopersicum HOM05D001088 ORTHO05D002099 3.6e-11 77.0 321 27.7
Nn6g33955 Nelumbo nucifera HOM05D001088 ORTHO05D002099 4.7e-11 76.6 322 27.3
Lalb_Chr09g0324381 Lupinus albus HOM05D001088 ORTHO05D002099 6.1e-11 76.3 322 28.0
QL12p012089 Quercus lobata HOM05D001088 ORTHO05D002099 6.1e-11 76.3 321 27.1
Solyc08g007340.3 Solanum lycopersicum HOM05D001088 ORTHO05D002099 6.1e-11 76.3 321 27.4
ECA240G0308 Erigeron canadensis HOM05D001088 ORTHO05D002099 8.0e-11 75.9 322 27.6
RcHm_v2.0_Chr7g0203431 Rosa chinensis HOM05D001088 ORTHO05D002099 1.0e-10 75.5 320 27.2
Sopen08g003280 Solanum pennellii HOM05D001088 ORTHO05D002099 1.0e-10 75.5 321 27.4
Ah.12g056800 Amaranthus hybridus HOM05D001088 ORTHO05D002099 1.4e-10 75.1 321 27.4
MSTRG.12102 Avicennia marina HOM05D001088 ORTHO05D002099 1.8e-10 74.7 322 27.6
Nitab4.5_0000712g0150 Nicotiana tabacum HOM05D001088 ORTHO05D002099 1.8e-10 74.7 321 28.7
Nitab4.5_0014313g0020 Nicotiana tabacum HOM05D001088 ORTHO05D002099 1.8e-10 74.7 323 28.5
Pp3c12_25260 Physcomitrium patens HOM05D001088 ORTHO05D002099 1.8e-10 74.7 324 27.5
THA.LOC104813329 Tarenaya hassleriana HOM05D001088 ORTHO05D002099 1.8e-10 74.7 324 26.9
Mapoly0001s0292 Marchantia polymorpha HOM05D001088 ORTHO05D002099 2.3e-10 74.3 323 27.6
VMungo0251G0583 Vigna mungo HOM05D001088 ORTHO05D002099 2.3e-10 74.3 322 27.3
FAN04G2185 Fragaria x ananassa HOM05D001088 ORTHO05D002099 3.0e-10 73.9 320 26.9
PGSC0003DMG401012474 Solanum tuberosum HOM05D001088 ORTHO05D002099 3.0e-10 73.9 321 26.8
Thecc.01G384500 Theobroma cacao HOM05D001088 ORTHO05D002099 5.2e-10 73.2 324 26.2
unitig_0.g1057 Utricularia gibba HOM05D001088 ORTHO05D002099 5.2e-10 73.2 324 28.1
MCO02G268 Micromonas commoda HOM05D001088 ORTHO05D002099 6.8e-10 72.8 322 32.3
Actinidia02137 Actinidia chinensis HOM05D001088 ORTHO05D002099 8.9e-10 72.4 319 26.3
Carub.0008s0028 Capsella rubella HOM05D001088 ORTHO05D002099 8.9e-10 72.4 324 26.2
FAN18G0873 Fragaria x ananassa HOM05D001088 ORTHO05D002099 1.2e-09 72.0 320 26.6
THA.LOC104815509 Tarenaya hassleriana HOM05D001088 ORTHO05D002099 1.2e-09 72.0 321 26.8
Atru.chr9.1309 Acer truncatum HOM05D001088 ORTHO05D002099 1.5e-09 71.6 322 27.6
MELO3C013938.2 Cucumis melo HOM05D001088 ORTHO05D002099 1.5e-09 71.6 322 26.7
Eucgr.D02081 Eucalyptus grandis HOM05D001088 ORTHO05D002099 1.5e-09 71.6 195 30.3
Rhsim07G0108500 Rhododendron simsii HOM05D001088 ORTHO05D002099 1.5e-09 71.6 327 26.0
Sabra03G0047500 Salix brachista HOM05D001088 ORTHO05D002099 1.5e-09 71.6 325 28.3
Aa31csc22G140 Aethionema arabicum HOM05D001088 ORTHO05D002099 2.0e-09 71.2 324 26.2
AL8G10490 Arabidopsis lyrata HOM05D001088 ORTHO05D002099 2.0e-09 71.2 324 26.9
AL8G10500 Arabidopsis lyrata HOM05D001088 ORTHO05D002099 2.0e-09 71.2 324 25.3
RcHm_v2.0_Chr7g0203401 Rosa chinensis HOM05D001088 ORTHO05D002099 2.0e-09 71.2 195 31.3
MD06G1059400 Malus domestica HOM05D001088 ORTHO05D002099 2.6e-09 70.9 322 26.4
Pp3c4_2840 Physcomitrium patens HOM05D001088 ORTHO05D002099 2.6e-09 70.9 325 27.4
Pp3c4_2860 Physcomitrium patens HOM05D001088 ORTHO05D002099 2.6e-09 70.9 325 27.4
Actinidia14424 Actinidia chinensis HOM05D001088 ORTHO05D002099 3.4e-09 70.5 319 26.0
Potri.003G077100 Populus trichocarpa HOM05D001088 ORTHO05D002099 5.7e-09 69.7 322 27.0
Cfa011147 Carpinus fangiana HOM05D001088 ORTHO05D002099 7.5e-09 69.3 323 26.6
FAN01G0267 Fragaria x ananassa HOM05D001088 ORTHO05D002099 7.5e-09 69.3 319 26.6
Potri.001G157800 Populus trichocarpa HOM05D001088 ORTHO05D002099 9.8e-09 68.9 322 27.0
PGR031G2640 Punica granatum HOM05D001088 ORTHO05D002099 9.8e-09 68.9 195 30.3
arahy.Tifrunner.gnm1.ann1.4XM3SI Arachis hypogaea HOM05D001088 ORTHO05D002099 1.3e-08 68.6 195 32.3
arahy.Tifrunner.gnm1.ann1.UX3HZQ Arachis hypogaea HOM05D001088 ORTHO05D002099 1.3e-08 68.6 195 32.3
HanXRQChr08g0227681 Helianthus annuus HOM05D001088 ORTHO05D002099 1.3e-08 68.6 250 31.2
THA.LOC104812805 Tarenaya hassleriana HOM05D001088 ORTHO05D002099 1.3e-08 68.6 324 25.9
FAN03G0625 Fragaria x ananassa HOM05D001088 ORTHO05D002099 2.2e-08 67.8 319 26.3
FAN10G1865 Fragaria x ananassa HOM05D001088 ORTHO05D002099 2.2e-08 67.8 319 26.3
FAN10G2901 Fragaria x ananassa HOM05D001088 ORTHO05D002099 2.2e-08 67.8 319 26.3
MD00G1171200 Malus domestica HOM05D001088 ORTHO05D002099 2.2e-08 67.8 322 26.4
SMO140G0055 Selaginella moellendorffii HOM05D001088 ORTHO05D002099 2.2e-08 67.8 320 28.4
SMO338G0008 Selaginella moellendorffii HOM05D001088 ORTHO05D002099 2.2e-08 67.8 320 28.4
arahy.Tifrunner.gnm1.ann1.B8KV7F Arachis hypogaea HOM05D001088 ORTHO05D002099 2.8e-08 67.4 195 31.8
Cpa.g.sc29.161 Carica papaya HOM05D001088 ORTHO05D002099 2.8e-08 67.4 320 25.0
QL04p036070 Quercus lobata HOM05D001088 ORTHO05D002099 2.8e-08 67.4 319 26.6
AL8G10540 Arabidopsis lyrata HOM05D001088 ORTHO05D002099 3.7e-08 67.0 326 25.5
Lalb_Chr16g0379571 Lupinus albus HOM05D001088 ORTHO05D002099 3.7e-08 67.0 195 30.8
CSS0009387 Camellia sinensis var. sinensis HOM05D001088 ORTHO05D002099 4.9e-08 66.6 250 27.6
CSS0017689 Camellia sinensis var. sinensis HOM05D001088 ORTHO05D002099 4.9e-08 66.6 250 27.6
SMO111G0194 Selaginella moellendorffii HOM05D001088 ORTHO05D002099 4.9e-08 66.6 320 28.8
ECA248G3293 Erigeron canadensis HOM05D001088 ORTHO05D002099 6.3e-08 66.2 195 32.3
FAN08G0735 Fragaria x ananassa HOM05D001088 ORTHO05D002099 6.3e-08 66.2 616 22.1
PSO063G1509 Papaver somniferum HOM05D001088 ORTHO05D002099 6.3e-08 66.2 636 23.1
QL04p036474 Quercus lobata HOM05D001088 ORTHO05D002099 6.3e-08 66.2 319 26.6
TWI60G0116 Tripterygium wilfordii HOM05D001088 ORTHO05D002099 6.3e-08 66.2 195 33.3
DCAR_025100 Daucus carota HOM05D001088 ORTHO05D002099 8.3e-08 65.9 316 26.3
FvH4_7g11010 Fragaria vesca HOM05D001088 ORTHO05D002099 1.1e-07 65.5 319 25.7
FAN13G2501 Fragaria x ananassa HOM05D001088 ORTHO05D002099 1.1e-07 65.5 614 22.1
FAN18G1240 Fragaria x ananassa HOM05D001088 ORTHO05D002099 1.1e-07 65.5 628 22.0
Ah.05g173780 Amaranthus hybridus HOM05D001088 ORTHO05D002099 1.4e-07 65.1 319 25.4
EL10Ac5g13068 Beta vulgaris HOM05D001088 ORTHO05D002099 1.4e-07 65.1 321 26.2
CiPaw.11G079400 Carya illinoinensis HOM05D001088 ORTHO05D002099 1.4e-07 65.1 320 27.2
FAN06G4914 Fragaria x ananassa HOM05D001088 ORTHO05D002099 1.4e-07 65.1 319 25.4
HanXRQChr16g0511631 Helianthus annuus HOM05D001088 ORTHO05D002099 1.4e-07 65.1 252 31.7
Actinidia27467 Actinidia chinensis HOM05D001088 ORTHO05D002099 1.8e-07 64.7 250 27.6
FvH4_5g19020 Fragaria vesca HOM05D001088 ORTHO05D002099 1.8e-07 64.7 628 22.0
FAN06G0264 Fragaria x ananassa HOM05D001088 ORTHO05D002099 1.8e-07 64.7 319 25.4
Psat2g178000 Pisum sativum HOM05D001088 ORTHO05D002099 1.8e-07 64.7 195 30.3
Sc02g0002830 Simmondsia chinensis HOM05D001088 ORTHO05D002099 1.8e-07 64.7 321 25.2
CDE11G0522 Ceratophyllum demersum HOM05D001088 ORTHO05D002099 2.4e-07 64.3 322 24.2
Dinv43666 Davidia involucrata HOM05D001088 ORTHO05D002099 2.4e-07 64.3 321 25.9
Medtr4g100870 Medicago truncatula HOM05D001088 ORTHO05D002099 2.4e-07 64.3 195 29.2
Oeu002334.2 Olea europaea HOM05D001088 ORTHO05D002099 2.4e-07 64.3 368 26.1
TWI59G0973 Tripterygium wilfordii HOM05D001088 ORTHO05D002099 2.4e-07 64.3 319 26.6
CARHR111790 Cardamine hirsuta HOM05D001088 ORTHO05D002099 3.1e-07 63.9 195 28.7
Hma1.2p1_1172F.1_g263640 Hydrangea macrophylla HOM05D001088 ORTHO05D002099 3.1e-07 63.9 195 30.8
PSO782G3389 Papaver somniferum HOM05D001088 ORTHO05D002099 3.1e-07 63.9 636 23.0
Phvul.002G063200 Phaseolus vulgaris HOM05D001088 ORTHO05D002099 3.1e-07 63.9 195 29.7
Sed0018646 Sechium edule HOM05D001088 ORTHO05D002099 3.1e-07 63.9 198 29.3
TWI81G0647 Tripterygium wilfordii HOM05D001088 ORTHO05D002099 3.1e-07 63.9 195 32.8
TAR629G2857 Trochodendron aralioides HOM05D001088 ORTHO05D002099 3.1e-07 63.9 195 29.2
Zm00001eb209850 Zea mays HOM05D001088 ORTHO05D002099 3.1e-07 63.9 325 25.8
BcaC04g21622 Brassica carinata HOM05D001088 ORTHO05D002099 4.1e-07 63.5 195 28.7
C09p29790 Brassica napus HOM05D001088 ORTHO05D002099 4.1e-07 63.5 195 28.7
BolC9t55843H Brassica oleracea HOM05D001088 ORTHO05D002099 4.1e-07 63.5 195 28.7
CiPaw.13G032000 Carya illinoinensis HOM05D001088 ORTHO05D002099 4.1e-07 63.5 324 25.3
CDE02G2709 Ceratophyllum demersum HOM05D001088 ORTHO05D002099 4.1e-07 63.5 320 24.4
AUR62004160 Chenopodium quinoa HOM05D001088 ORTHO05D002099 4.1e-07 63.5 197 28.9
CsaV3_3G002700 Cucumis sativus L. HOM05D001088 ORTHO05D002099 4.1e-07 63.5 195 29.2
GSVIVG01004707001 Vitis vinifera HOM05D001088 ORTHO05D002099 4.1e-07 63.5 195 29.7
BcaB07g30778 Brassica carinata HOM05D001088 ORTHO05D002099 5.4e-07 63.2 195 28.7
A09p23050 Brassica napus HOM05D001088 ORTHO05D002099 5.4e-07 63.2 195 28.7
BraA09t37909Z Brassica rapa HOM05D001088 ORTHO05D002099 5.4e-07 63.2 195 28.7
ClCG10G002670 Citrullus lanatus HOM05D001088 ORTHO05D002099 5.4e-07 63.2 195 29.2
ECA233G2248 Erigeron canadensis HOM05D001088 ORTHO05D002099 5.4e-07 63.2 250 30.0
Sp2g12210 Schrenkiella parvula HOM05D001088 ORTHO05D002099 5.4e-07 63.2 195 28.7
Aa31LG2G12740 Aethionema arabicum HOM05D001088 ORTHO05D002099 7.0e-07 62.8 359 24.5
ATR0602G181 Amborella trichopoda HOM05D001088 ORTHO05D002099 7.0e-07 62.8 319 25.4
Carub.0008s0029 Capsella rubella HOM05D001088 ORTHO05D002099 7.0e-07 62.8 195 28.7
BcaB07g30775 Brassica carinata HOM05D001088 ORTHO05D002099 9.2e-07 62.4 195 28.2
HanXRQChr13g0417441 Helianthus annuus HOM05D001088 ORTHO05D002099 9.2e-07 62.4 250 27.6
Peaxi162Scf00102g01063 Petunia axillaris HOM05D001088 ORTHO05D002099 9.2e-07 62.4 356 26.4
Sed0006961 Sechium edule HOM05D001088 ORTHO05D002099 9.2e-07 62.4 198 29.3
CANSAT21G1578 Cannabis sativa HOM05D001088 ORTHO05D002099 1.2e-06 62.0 195 29.7
Oeu040202.2 Olea europaea HOM05D001088 ORTHO05D002099 1.2e-06 62.0 195 30.8
A06p45030 Brassica napus HOM05D001088 ORTHO05D002099 1.6e-06 61.6 195 27.7
C07p31140 Brassica napus HOM05D001088 ORTHO05D002099 1.6e-06 61.6 195 27.7
BraA06t27374Z Brassica rapa HOM05D001088 ORTHO05D002099 1.6e-06 61.6 195 27.7
Dinv21640 Davidia involucrata HOM05D001088 ORTHO05D002099 1.6e-06 61.6 250 27.2
Dinv39149 Davidia involucrata HOM05D001088 ORTHO05D002099 1.6e-06 61.6 250 28.8
Glyma.01G209300 Glycine max HOM05D001088 ORTHO05D002099 1.6e-06 61.6 195 30.3
Gohir.D07G153100 Gossypium hirsutum HOM05D001088 ORTHO05D002099 1.6e-06 61.6 250 28.4
Lj4g0020557 Lotus japonicus HOM05D001088 ORTHO05D002099 1.6e-06 61.6 195 28.7
EL10Ac1g00834 Beta vulgaris HOM05D001088 ORTHO05D002099 2.0e-06 61.2 324 24.4
Ca_24579_v3 Cicer arietinum L. HOM05D001088 ORTHO05D002099 2.0e-06 61.2 195 30.3
Sed0012564 Sechium edule HOM05D001088 ORTHO05D002099 2.0e-06 61.2 195 28.7
AUR62013687 Chenopodium quinoa HOM05D001088 ORTHO05D002099 2.7e-06 60.8 197 28.9
Lalb_Chr05g0214461 Lupinus albus HOM05D001088 ORTHO05D002099 2.7e-06 60.8 195 29.2
BolC7t43655H Brassica oleracea HOM05D001088 ORTHO05D002099 3.5e-06 60.5 195 27.7
Lalb_Chr09g0324391 Lupinus albus HOM05D001088 ORTHO05D002099 3.5e-06 60.5 195 29.2
Zm00001eb229410 Zea mays HOM05D001088 ORTHO05D002099 4.5e-06 60.1 322 25.2
Aa31LG2G12730 Aethionema arabicum HOM05D001088 ORTHO05D002099 5.9e-06 59.7 359 24.0
AT5G47480 Arabidopsis thaliana HOM05D001088 ORTHO05D002099 5.9e-06 59.7 195 25.1
CiPaw.12G052700 Carya illinoinensis HOM05D001088 ORTHO05D002099 5.9e-06 59.7 195 28.7
AUR62043758 Chenopodium quinoa HOM05D001088 ORTHO05D002099 5.9e-06 59.7 199 28.6
AUR62043807 Chenopodium quinoa HOM05D001088 ORTHO05D002099 5.9e-06 59.7 199 28.6
Thhalv10000734m.g Eutrema salsugineum HOM05D001088 ORTHO05D002099 5.9e-06 59.7 195 28.2
Glyma.11G032900 Glycine max HOM05D001088 ORTHO05D002099 5.9e-06 59.7 195 28.2
Prupe.2G136900 Prunus persica HOM05D001088 ORTHO05D002099 5.9e-06 59.7 321 26.2
Prupe.5G070400 Prunus persica HOM05D001088 ORTHO05D002099 5.9e-06 59.7 630 21.6
Sabra01G0133700 Salix brachista HOM05D001088 ORTHO05D002099 5.9e-06 59.7 195 29.7
AUR62044032 Chenopodium quinoa HOM05D001088 ORTHO05D002099 7.8e-06 59.3 199 28.6
Duzib138G0400 Durio zibethinus HOM05D001088 ORTHO05D002099 7.8e-06 59.3 250 26.8
Thhalv10000744m.g Eutrema salsugineum HOM05D001088 ORTHO05D002099 7.8e-06 59.3 250 26.4
Gohir.A07G147100 Gossypium hirsutum HOM05D001088 ORTHO05D002099 7.8e-06 59.3 250 28.0
RcHm_v2.0_Chr1g0349011 Rosa chinensis HOM05D001088 ORTHO05D002099 7.8e-06 59.3 317 25.2


User provided reference genes

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