Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre01.g006900 Chlamydomonas reinhardtii HOM05D030148 ORTHO05D139388 0.0e+00 4120.9 2182 100.0
Cre08.g370900 Chlamydomonas reinhardtii HOM05D030148 ORTHO05D034442 4.9e-95 354.8 493 43.6
Cre08.g359200 Chlamydomonas reinhardtii HOM05D000189 ORTHO05D004078 6.2e-66 258.1 456 39.0
MCO05G743 Micromonas commoda HOM05D000189 ORTHO05D034442 1.1e-65 257.3 422 40.3
MCO02G093 Micromonas commoda HOM05D000189 ORTHO05D034442 4.2e-46 192.2 327 39.4
Cre12.g515350 Chlamydomonas reinhardtii HOM05D013150 ORTHO05D141818 1.3e-44 187.2 506 32.0
Cre08.g358560 Chlamydomonas reinhardtii HOM05D030148 ORTHO05D146835 2.0e-32 146.7 404 32.7
MCO15G103 Micromonas commoda HOM05D000189 ORTHO05D004078 2.2e-26 126.7 398 32.2
MCO16G021 Micromonas commoda HOM05D000189 ORTHO05D004078 3.5e-24 119.4 449 26.9
MCO10G108 Micromonas commoda HOM05D000189 ORTHO05D004078 2.3e-20 106.7 398 27.6
vmacro16556 Vaccinium macrocarpon HOM05D000189 ORTHO05D000474 2.7e-13 83.2 366 29.0
Cre02.g095125 Chlamydomonas reinhardtii HOM05D030148 ORTHO05D139398 4.0e-12 79.3 644 25.9
FAN19G0214 Fragaria x ananassa HOM05D000189 ORTHO05D007859 1.2e-11 77.8 370 25.4
Cre01.g025200 Chlamydomonas reinhardtii HOM05D014032 ORTHO05D140438 3.3e-11 76.3 281 26.7
FAN26G1447 Fragaria x ananassa HOM05D000189 ORTHO05D007859 5.7e-11 75.5 370 25.7
Glyma.14G145900 Glycine max HOM05D005233 ORTHO05D006308 1.7e-10 73.9 416 26.4
Gorai.013G084200 Gossypium raimondii HOM05D000189 ORTHO05D000474 6.3e-10 72.0 343 25.9
Thecc.02G350100 Theobroma cacao HOM05D000189 ORTHO05D000474 6.3e-10 72.0 340 26.2
Cre08.g376950 Chlamydomonas reinhardtii HOM05D009936 ORTHO05D143251 1.4e-09 70.9 213 28.2
RcHm_v2.0_Chr4g0440051 Rosa chinensis HOM05D000189 ORTHO05D000474 1.8e-09 70.5 339 26.0
Gohir.D13G073500 Gossypium hirsutum HOM05D000189 ORTHO05D000474 2.4e-09 70.1 341 26.1
Hund07229 Selenicereus undatus HOM05D000189 ORTHO05D004078 2.4e-09 70.1 318 31.4
Migut.N03217 Erythranthe guttata HOM05D000189 ORTHO05D000474 3.1e-09 69.7 341 25.5
PRCOL_00003069 Prasinoderma coloniale HOM05D000189 ORTHO05D004078 3.1e-09 69.7 354 30.5
Pp3c23_5890 Physcomitrium patens HOM05D002600 ORTHO05D003013 4.1e-09 69.3 304 29.3
EL10Ac4g09653 Beta vulgaris HOM05D000189 ORTHO05D007859 7.0e-09 68.6 406 24.6
CAN.G1207.4 Capsicum annuum HOM05D000189 ORTHO05D000474 7.0e-09 68.6 343 25.4
ClCG11G009350 Citrullus lanatus HOM05D000189 ORTHO05D000474 7.0e-09 68.6 350 27.4
FvH4_1g25640 Fragaria vesca HOM05D000189 ORTHO05D007859 9.1e-09 68.2 297 27.3
CiPaw.15G019100 Carya illinoinensis HOM05D000189 ORTHO05D000474 1.2e-08 67.8 335 25.7
MELO3C008529.2 Cucumis melo HOM05D000189 ORTHO05D000474 1.2e-08 67.8 338 26.9
FAN28G0421 Fragaria x ananassa HOM05D000189 ORTHO05D007859 2.7e-08 66.6 391 24.8
Lalb_Chr02g0141371 Lupinus albus HOM05D000189 ORTHO05D000474 2.7e-08 66.6 337 25.5
BraA06t25667Z Brassica rapa HOM05D000189 ORTHO05D000474 3.5e-08 66.2 331 26.0
PGR102G2655 Punica granatum HOM05D000189 ORTHO05D004078 3.5e-08 66.2 383 27.9
MCO04G015 Micromonas commoda HOM05D002600 ORTHO05D004078 4.5e-08 65.9 313 25.2
Nitab4.5_0006574g0090 Nicotiana tabacum HOM05D000189 ORTHO05D000474 4.5e-08 65.9 239 28.9
THA.LOC104808684 Tarenaya hassleriana HOM05D002600 ORTHO05D003013 4.5e-08 65.9 314 27.7
Gorai.005G140400 Gossypium raimondii HOM05D000189 ORTHO05D000474 5.9e-08 65.5 343 27.4
THA.LOC104824588 Tarenaya hassleriana HOM05D002600 ORTHO05D003013 5.9e-08 65.5 322 27.3
THA.LOC104822111 Tarenaya hassleriana HOM05D000189 ORTHO05D000474 7.7e-08 65.1 362 25.4
VMungo0540G0325 Vigna mungo HOM05D000189 ORTHO05D000474 7.7e-08 65.1 303 25.1
Gohir.D02G124800 Gossypium hirsutum HOM05D000189 ORTHO05D000474 1.0e-07 64.7 342 26.6
QL02p024570 Quercus lobata HOM05D000189 ORTHO05D000474 1.0e-07 64.7 335 24.8
BcaC01g02289 Brassica carinata HOM05D000189 ORTHO05D000474 1.3e-07 64.3 269 27.9
A06p27260 Brassica napus HOM05D000189 ORTHO05D000474 1.3e-07 64.3 331 25.7
C03p67000 Brassica napus HOM05D000189 ORTHO05D000474 1.3e-07 64.3 269 27.9
BolC3t18974H Brassica oleracea HOM05D000189 ORTHO05D000474 1.3e-07 64.3 269 27.9
CSS0037868 Camellia sinensis var. sinensis HOM05D000189 ORTHO05D000474 1.3e-07 64.3 335 24.5
Nitab4.5_0002257g0100 Nicotiana tabacum HOM05D000189 ORTHO05D000474 1.3e-07 64.3 239 28.5
Os04g0435700 Oryza sativa ssp. japonica HOM05D000189 ORTHO05D004078 1.7e-07 63.9 256 27.0
Phvul.006G086811 Phaseolus vulgaris HOM05D000189 ORTHO05D000474 2.2e-07 63.5 303 24.8
Pp3c24_9770 Physcomitrium patens HOM05D002600 ORTHO05D003013 2.2e-07 63.5 306 30.1
Zm00001eb072860 Zea mays HOM05D000189 ORTHO05D000474 2.2e-07 63.5 368 23.9
AL2G28880 Arabidopsis lyrata HOM05D000189 ORTHO05D000474 2.9e-07 63.2 339 25.4
Dinv41102 Davidia involucrata HOM05D000189 ORTHO05D000474 2.9e-07 63.2 338 25.4
ATR0097G025 Amborella trichopoda HOM05D000189 ORTHO05D006628 3.8e-07 62.8 279 27.2
A06p30470 Brassica napus HOM05D000189 ORTHO05D004078 3.8e-07 62.8 463 24.2
BraA06t25996Z Brassica rapa HOM05D000189 ORTHO05D004078 3.8e-07 62.8 463 24.2
Cre09.g393700 Chlamydomonas reinhardtii HOM05D021609 ORTHO05D145203 3.8e-07 62.8 109 35.8
PGR119G0679 Punica granatum HOM05D000189 ORTHO05D000474 3.8e-07 62.8 365 26.0
Ca_17069_v3 Cicer arietinum L. HOM05D000189 ORTHO05D000474 5.0e-07 62.4 338 22.5
Pp3c20_17190 Physcomitrium patens HOM05D002600 ORTHO05D003013 5.0e-07 62.4 304 28.6
Rhsim08G0021300 Rhododendron simsii HOM05D000189 ORTHO05D000474 5.0e-07 62.4 337 24.6
Lj6g0006328 Lotus japonicus HOM05D000189 ORTHO05D000474 6.5e-07 62.0 303 25.4
Sp5g06900 Schrenkiella parvula HOM05D002600 ORTHO05D003013 6.5e-07 62.0 279 28.3
AL5G34820 Arabidopsis lyrata HOM05D002600 ORTHO05D003013 8.5e-07 61.6 313 27.2
Cre13.g605200 Chlamydomonas reinhardtii HOM05D021609 ORTHO05D146236 8.5e-07 61.6 205 27.3
Migut.L01309 Erythranthe guttata HOM05D000189 ORTHO05D000474 8.5e-07 61.6 269 27.5
Pp3c23_11270 Physcomitrium patens HOM05D002600 ORTHO05D003013 8.5e-07 61.6 304 28.6
RcHm_v2.0_Chr2g0163071 Rosa chinensis HOM05D000189 ORTHO05D006628 8.5e-07 61.6 320 25.6
AagrBONN_evm.TU.Sc2ySwM_228.657 Anthoceros agrestis HOM05D000189 ORTHO05D004078 1.1e-06 61.2 293 27.0
CARHR165630 Cardamine hirsuta HOM05D002600 ORTHO05D003013 1.1e-06 61.2 281 26.7
Mapoly0123s0009 Marchantia polymorpha HOM05D002600 ORTHO05D003013 1.1e-06 61.2 315 28.6
C08p30900 Brassica napus HOM05D002600 ORTHO05D003013 1.5e-06 60.8 307 26.4
Carub.0002s1637 Capsella rubella HOM05D000189 ORTHO05D000474 1.5e-06 60.8 362 24.3
SGA_v2.0_scaffold67G22741 Striga asiatica HOM05D000189 ORTHO05D000474 1.5e-06 60.8 359 23.1
Atru.chr4.1006 Acer truncatum HOM05D000189 ORTHO05D004078 1.9e-06 60.5 255 24.7
CANSAT35G1732 Cannabis sativa HOM05D005233 ORTHO05D006308 1.9e-06 60.5 361 24.7
Cre17.g718500 Chlamydomonas reinhardtii HOM05D021609 ORTHO05D144096 1.9e-06 60.5 107 34.6
RcHm_v2.0_Chr2g0122641 Rosa chinensis HOM05D000189 ORTHO05D004078 1.9e-06 60.5 309 28.5
BcaC08g47195 Brassica carinata HOM05D000189 ORTHO05D000474 2.5e-06 60.1 272 26.5
CSS0047273 Camellia sinensis var. sinensis HOM05D000189 ORTHO05D000474 2.5e-06 60.1 335 23.9
Duzib248G0193 Durio zibethinus HOM05D000189 ORTHO05D000474 2.5e-06 60.1 439 24.4
Migut.H02084 Erythranthe guttata HOM05D000189 ORTHO05D007542 2.5e-06 60.1 376 28.2
MCO09G729 Micromonas commoda HOM05D000189 ORTHO05D003013 2.5e-06 60.1 259 28.6
Nn5g28428 Nelumbo nucifera HOM05D000189 ORTHO05D004078 2.5e-06 60.1 279 26.9
Nitab4.5_0000647g0190 Nicotiana tabacum HOM05D002600 ORTHO05D003013 2.5e-06 60.1 316 26.9
Psat5g142920 Pisum sativum HOM05D000189 ORTHO05D000474 2.5e-06 60.1 315 24.1
SalBow1G5355 Salvia bowleyana HOM05D000189 ORTHO05D004078 2.5e-06 60.1 475 24.2
THA.LOC104813389 Tarenaya hassleriana HOM05D000189 ORTHO05D000474 2.5e-06 60.1 333 25.8
vmacro14274 Vaccinium macrocarpon HOM05D000189 ORTHO05D000474 2.5e-06 60.1 297 24.9
vmacro18510 Vaccinium macrocarpon HOM05D000189 ORTHO05D000474 3.2e-06 59.7 340 23.5
C03p62590 Brassica napus HOM05D000189 ORTHO05D004078 4.2e-06 59.3 464 23.9
CAN.G1184.6 Capsicum annuum HOM05D002600 ORTHO05D003013 4.2e-06 59.3 318 25.5
TWI63G0853 Tripterygium wilfordii HOM05D002600 ORTHO05D003013 4.2e-06 59.3 237 26.6
Aqoxy6G02731 Aquilegia oxysepala HOM05D000189 ORTHO05D000474 5.5e-06 58.9 335 22.7
Carub.0005s2232 Capsella rubella HOM05D002600 ORTHO05D003013 5.5e-06 58.9 309 26.5
Cre10.g440550 Chlamydomonas reinhardtii HOM05D047461 ORTHO05D043991 5.5e-06 58.9 150 35.3
Cre17.g718468 Chlamydomonas reinhardtii HOM05D021609 ORTHO05D145668 5.5e-06 58.9 150 30.7
Os02g0554100 Oryza sativa ssp. japonica HOM05D000189 ORTHO05D004078 5.5e-06 58.9 327 26.9
PSO339G6508 Papaver somniferum HOM05D002600 ORTHO05D003013 5.5e-06 58.9 311 26.7
AT3G55580 Arabidopsis thaliana HOM05D002600 ORTHO05D003013 7.2e-06 58.5 282 27.0
BcaB01g00077 Brassica carinata HOM05D002600 ORTHO05D003013 7.2e-06 58.5 307 26.7
BolC3t18516H Brassica oleracea HOM05D000189 ORTHO05D004078 7.2e-06 58.5 467 24.0
DCAR_011738 Daucus carota HOM05D002600 ORTHO05D003013 7.2e-06 58.5 318 27.7
Oeu043282.1 Olea europaea HOM05D000189 ORTHO05D000474 7.2e-06 58.5 260 26.9
Sed0014137 Sechium edule HOM05D000189 ORTHO05D000474 7.2e-06 58.5 333 24.9
Oeu042323.1 Olea europaea HOM05D000189 ORTHO05D004078 9.4e-06 58.2 309 27.5
RcHm_v2.0_Chr1g0368491 Rosa chinensis HOM05D002600 ORTHO05D003013 9.4e-06 58.2 227 27.3


User provided reference genes

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