Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre01.g002200 Chlamydomonas reinhardtii HOM05D003818 ORTHO05D004541 4.5e-68 261.2 133 100.0
HanXRQChr16g0532841 Helianthus annuus HOM05D003818 ORTHO05D004541 2.5e-34 149.1 137 62.0
CBR_g31915 Chara braunii HOM05D003818 ORTHO05D004541 3.2e-34 148.7 138 59.4
Rhsim03G0177700 Rhododendron simsii HOM05D003818 ORTHO05D004541 7.2e-34 147.5 138 60.1
Actinidia31809 Actinidia chinensis HOM05D003818 ORTHO05D004541 2.1e-33 146.0 138 58.7
Hund27319 Selenicereus undatus HOM05D003818 ORTHO05D004541 2.1e-33 146.0 126 60.3
Rhsim05G0017100 Rhododendron simsii HOM05D003818 ORTHO05D004541 4.7e-33 144.8 138 59.4
LjContig00564g0007738 Lotus japonicus HOM05D003818 ORTHO05D004541 6.1e-33 144.4 135 60.7
MD12G1011200 Malus domestica HOM05D003818 ORTHO05D004541 6.1e-33 144.4 140 57.1
Lj2g0002682 Lotus japonicus HOM05D003818 ORTHO05D004541 8.0e-33 144.1 139 59.0
TWI39G1222 Tripterygium wilfordii HOM05D003818 ORTHO05D004541 8.0e-33 144.1 123 64.2
Migut.K00399 Erythranthe guttata HOM05D003818 ORTHO05D004541 1.0e-32 143.7 137 60.6
MCO13G124 Micromonas commoda HOM05D003818 ORTHO05D004541 1.0e-32 143.7 103 67.0
TWI23G0179 Tripterygium wilfordii HOM05D003818 ORTHO05D004541 1.0e-32 143.7 123 64.2
Prupe.3G134400 Prunus persica HOM05D003818 ORTHO05D004541 1.4e-32 143.3 126 62.7
SGA_v2.0_scaffold59G20747 Striga asiatica HOM05D003818 ORTHO05D004541 1.8e-32 142.9 136 60.3
AUR62004298 Chenopodium quinoa HOM05D003818 ORTHO05D004541 2.3e-32 142.5 139 57.6
AUR62022747 Chenopodium quinoa HOM05D003818 ORTHO05D004541 2.3e-32 142.5 139 57.6
Pp3c16_17050 Physcomitrium patens HOM05D003818 ORTHO05D004541 2.3e-32 142.5 142 60.6
SMO200G0145 Selaginella moellendorffii HOM05D003818 ORTHO05D004541 2.3e-32 142.5 79 83.5
THA.LOC104819386 Tarenaya hassleriana HOM05D003818 ORTHO05D004541 2.3e-32 142.5 134 58.2
TAR374G0305 Trochodendron aralioides HOM05D003818 ORTHO05D004541 2.3e-32 142.5 137 58.4
Cpa.g.sc370.10 Carica papaya HOM05D003818 ORTHO05D004541 3.0e-32 142.1 123 61.8
MSTRG.27132 Avicennia marina HOM05D003818 ORTHO05D004541 4.0e-32 141.7 134 59.0
CDE02G0031 Ceratophyllum demersum HOM05D003818 ORTHO05D004541 4.0e-32 141.7 79 82.3
CDE06G2832 Ceratophyllum demersum HOM05D003818 ORTHO05D004541 4.0e-32 141.7 79 82.3
Dinv28474 Davidia involucrata HOM05D003818 ORTHO05D004541 4.0e-32 141.7 134 59.0
Phvul.007G066800 Phaseolus vulgaris HOM05D003818 ORTHO05D004541 4.0e-32 141.7 143 60.1
Sc23g0003230 Simmondsia chinensis HOM05D003818 ORTHO05D004541 4.0e-32 141.7 95 71.6
TAR375G1045 Trochodendron aralioides HOM05D003818 ORTHO05D004541 4.0e-32 141.7 136 58.1
unitig_0.g2487 Utricularia gibba HOM05D003818 ORTHO05D004541 4.0e-32 141.7 79 82.3
Eucgr.H00421 Eucalyptus grandis HOM05D003818 ORTHO05D004541 5.2e-32 141.4 140 57.1
MBI07_g30196_MAGBIO Magnolia biondii HOM05D003818 ORTHO05D004541 5.2e-32 141.4 123 65.0
TPR.G3844 Trifolium pratense HOM05D003818 ORTHO05D004541 5.2e-32 141.4 132 59.8
Cfa020017 Carpinus fangiana HOM05D003818 ORTHO05D004541 6.8e-32 141.0 123 63.4
Haze_13747 Corylus avellana HOM05D003818 ORTHO05D004541 6.8e-32 141.0 123 62.6
Gohir.D11G009000 Gossypium hirsutum HOM05D003818 ORTHO05D004541 6.8e-32 141.0 123 62.6
Gorai.007G010600 Gossypium raimondii HOM05D003818 ORTHO05D004541 6.8e-32 141.0 123 62.6
VMungo0720G0599 Vigna mungo HOM05D003818 ORTHO05D004541 6.8e-32 141.0 139 59.0
Ciclev10006171m.g Citrus clementina HOM05D003818 ORTHO05D004541 8.8e-32 140.6 77 83.1
Cc02_g03330 Coffea canephora HOM05D003818 ORTHO05D004541 8.8e-32 140.6 136 60.3
DCAR_018174 Daucus carota HOM05D003818 ORTHO05D004541 8.8e-32 140.6 79 81.0
Thhalv10005087m.g Eutrema salsugineum HOM05D003818 ORTHO05D004541 8.8e-32 140.6 123 61.0
FvH4_2g14180 Fragaria vesca HOM05D003818 ORTHO05D004541 8.8e-32 140.6 140 58.6
FAN24G1752 Fragaria x ananassa HOM05D003818 ORTHO05D004541 8.8e-32 140.6 140 58.6
FAN27G0424 Fragaria x ananassa HOM05D003818 ORTHO05D004541 8.8e-32 140.6 140 58.6
Lsat_1_v5_gn_1_9221 Lactuca sativa HOM05D003818 ORTHO05D004541 8.8e-32 140.6 136 58.8
MD17G1234800 Malus domestica HOM05D003818 ORTHO05D004541 8.8e-32 140.6 126 58.7
PGR102G2559 Punica granatum HOM05D003818 ORTHO05D004541 8.8e-32 140.6 135 59.3
QL06p049138 Quercus lobata HOM05D003818 ORTHO05D004541 8.8e-32 140.6 123 64.2
CSS0048006 Camellia sinensis var. sinensis HOM05D003818 ORTHO05D004541 1.2e-31 140.2 126 58.7
COL.COLO4_14270 Corchorus olitorius HOM05D003818 ORTHO05D004541 1.2e-31 140.2 122 59.8
Lalb_Chr21g0304961 Lupinus albus HOM05D003818 ORTHO05D004541 1.2e-31 140.2 136 60.3
Oeu061636.1 Olea europaea HOM05D003818 ORTHO05D004541 1.2e-31 140.2 139 59.0
Sed0011620 Sechium edule HOM05D003818 ORTHO05D004541 1.2e-31 140.2 136 56.6
Zm00001eb219520 Zea mays HOM05D003818 ORTHO05D004541 1.2e-31 140.2 137 59.1
AagrBONN_evm.TU.Sc2ySwM_344.4289 Anthoceros agrestis HOM05D003818 ORTHO05D004541 1.5e-31 139.8 77 83.1
Aqoxy6G01685 Aquilegia oxysepala HOM05D003818 ORTHO05D004541 1.5e-31 139.8 129 59.7
Haze_20202 Corylus avellana HOM05D003818 ORTHO05D004541 1.5e-31 139.8 123 62.6
CsaV3_3G046320 Cucumis sativus L. HOM05D003818 ORTHO05D004541 1.5e-31 139.8 79 81.0
FAN15G1651 Fragaria x ananassa HOM05D003818 ORTHO05D004541 1.5e-31 139.8 140 58.6
Mapoly0001s0266 Marchantia polymorpha HOM05D003818 ORTHO05D004541 1.5e-31 139.8 79 82.3
A09p03630 Brassica napus HOM05D003818 ORTHO05D004541 2.0e-31 139.4 123 59.3
C09p03860 Brassica napus HOM05D003818 ORTHO05D004541 2.0e-31 139.4 123 59.3
BraA09t36001Z Brassica rapa HOM05D003818 ORTHO05D004541 2.0e-31 139.4 123 59.3
Lsat_1_v5_gn_3_64081 Lactuca sativa HOM05D003818 ORTHO05D004541 2.0e-31 139.4 79 81.0
MBI04_g00300_MAGBIO Magnolia biondii HOM05D003818 ORTHO05D004541 2.0e-31 139.4 123 62.6
Manes.06G144400 Manihot esculenta HOM05D003818 ORTHO05D004541 2.0e-31 139.4 136 59.6
Psat3g070640 Pisum sativum HOM05D003818 ORTHO05D004541 2.0e-31 139.4 142 57.7
PRCOL_00007084 Prasinoderma coloniale HOM05D003818 ORTHO05D004541 2.0e-31 139.4 126 61.9
ATR0757G129 Amborella trichopoda HOM05D003818 ORTHO05D004541 2.6e-31 139.0 141 58.2
CiPaw.04G066900 Carya illinoinensis HOM05D003818 ORTHO05D004541 2.6e-31 139.0 138 58.0
Dinv35185 Davidia involucrata HOM05D003818 ORTHO05D004541 2.6e-31 139.0 134 57.5
Medtr7g092450 Medicago truncatula HOM05D003818 ORTHO05D004541 2.6e-31 139.0 142 57.0
RcHm_v2.0_Chr6g0276321 Rosa chinensis HOM05D003818 ORTHO05D004541 2.6e-31 139.0 140 55.7
Thecc.03G171400 Theobroma cacao HOM05D003818 ORTHO05D004541 2.6e-31 139.0 77 81.8
BcaB04g19460 Brassica carinata HOM05D003818 ORTHO05D004541 3.4e-31 138.7 123 59.3
Medtr0019s0160 Medicago truncatula HOM05D003818 ORTHO05D004541 3.4e-31 138.7 137 56.9
THA.LOC104818368 Tarenaya hassleriana HOM05D003818 ORTHO05D004541 3.4e-31 138.7 130 58.5
GSVIVG01010613001 Vitis vinifera HOM05D003818 ORTHO05D004541 3.4e-31 138.7 126 59.5
Hma1.2p1_0099F.1_g048510 Hydrangea macrophylla HOM05D003818 ORTHO05D004541 4.4e-31 138.3 134 58.2
SEGI_10630 Sequoiadendron giganteum HOM05D003818 ORTHO05D004541 4.4e-31 138.3 136 58.1
arahy.Tifrunner.gnm1.ann1.7N83Z4 Arachis hypogaea HOM05D003818 ORTHO05D004541 5.7e-31 137.9 139 59.7
arahy.Tifrunner.gnm1.ann1.Y3E72Q Arachis hypogaea HOM05D003818 ORTHO05D004541 5.7e-31 137.9 139 59.7
EL10Ac1g00990 Beta vulgaris HOM05D003818 ORTHO05D004541 5.7e-31 137.9 137 56.2
Carub.0008s1203 Capsella rubella HOM05D003818 ORTHO05D004541 5.7e-31 137.9 123 61.0
Glyma.10G238600 Glycine max HOM05D003818 ORTHO05D004541 5.7e-31 137.9 136 58.1
Gorai.004G121300 Gossypium raimondii HOM05D003818 ORTHO05D004541 5.7e-31 137.9 77 81.8
HanXRQChr04g0108631 Helianthus annuus HOM05D003818 ORTHO05D004541 5.7e-31 137.9 136 57.4
Nn3g21139 Nelumbo nucifera HOM05D003818 ORTHO05D004541 5.7e-31 137.9 135 57.8
VMungo0720G0479 Vigna mungo HOM05D001872 ORTHO05D001859 5.7e-31 137.9 133 57.9
Atru.chr3.2134 Acer truncatum HOM05D003818 ORTHO05D004541 7.5e-31 137.5 77 80.5
AT5G51940 Arabidopsis thaliana HOM05D003818 ORTHO05D004541 7.5e-31 137.5 133 55.6
Glyma.20G155900 Glycine max HOM05D003818 ORTHO05D004541 7.5e-31 137.5 139 58.3
Gohir.A08G082700 Gossypium hirsutum HOM05D003818 ORTHO05D004541 7.5e-31 137.5 96 66.7
Hma1.2p1_0270F.1_g108370 Hydrangea macrophylla HOM05D003818 ORTHO05D004541 7.5e-31 137.5 134 58.2
Potri.012G136900 Populus trichocarpa HOM05D003818 ORTHO05D004541 7.5e-31 137.5 121 62.0
Potri.015G138800 Populus trichocarpa HOM05D003818 ORTHO05D004541 7.5e-31 137.5 135 58.5
PGSC0003DMG400008922 Solanum tuberosum HOM05D003818 ORTHO05D004541 7.5e-31 137.5 138 59.4
Cfa008286 Carpinus fangiana HOM05D003818 ORTHO05D004541 9.7e-31 137.1 123 60.2
Phvul.007G009900 Phaseolus vulgaris HOM05D003818 ORTHO05D004541 9.7e-31 137.1 135 58.5
Sabra15G0149800 Salix brachista HOM05D003818 ORTHO05D004541 9.7e-31 137.1 135 58.5
vmacro06714 Vaccinium macrocarpon HOM05D003818 ORTHO05D004541 9.7e-31 137.1 79 79.7
ClCG05G016800 Citrullus lanatus HOM05D002695 ORTHO05D002964 1.3e-30 136.7 129 56.6
DCAR_009510 Daucus carota HOM05D000059 ORTHO05D000128 1.3e-30 136.7 136 55.1
Gohir.A11G009700 Gossypium hirsutum HOM05D003818 ORTHO05D004541 1.3e-30 136.7 137 55.5
Sp2g17150 Schrenkiella parvula HOM05D003818 ORTHO05D004541 1.3e-30 136.7 123 60.2
GSVIVG01020800001 Vitis vinifera HOM05D003818 ORTHO05D004541 1.3e-30 136.7 131 58.0
Aa31LG9G1570 Aethionema arabicum HOM05D003818 ORTHO05D004541 1.7e-30 136.3 133 56.4
BcaC04g23878 Brassica carinata HOM05D003818 ORTHO05D004541 1.7e-30 136.3 123 58.5
BolC4t26244H Brassica oleracea HOM05D003818 ORTHO05D004541 1.7e-30 136.3 133 55.6
BolC9t53311H Brassica oleracea HOM05D003818 ORTHO05D004541 1.7e-30 136.3 123 58.5
Gohir.D08G112900 Gossypium hirsutum HOM05D003818 ORTHO05D004541 1.7e-30 136.3 77 80.5
Os07g0463100 Oryza sativa ssp. japonica HOM05D003818 ORTHO05D004541 1.7e-30 136.3 133 57.1
Solyc09g010500.3 Solanum lycopersicum HOM05D003818 ORTHO05D004541 1.7e-30 136.3 138 58.7
Sopen09g005230 Solanum pennellii HOM05D003818 ORTHO05D004541 1.7e-30 136.3 138 58.7
Atru.chr1.512 Acer truncatum HOM05D003818 ORTHO05D004541 2.2e-30 136.0 123 61.8
C04p46580 Brassica napus HOM05D003818 ORTHO05D004541 2.2e-30 136.0 133 55.6
Carub.0003s2626 Capsella rubella HOM05D003818 ORTHO05D004541 2.2e-30 136.0 123 59.3
Duzib068G1062 Durio zibethinus HOM05D003818 ORTHO05D004541 2.2e-30 136.0 137 54.0
Lalb_Chr06g0161031 Lupinus albus HOM05D003818 ORTHO05D004541 2.2e-30 136.0 131 58.0
Os03g0586600 Oryza sativa ssp. japonica HOM05D003818 ORTHO05D004541 2.2e-30 136.0 137 57.7
Sp7g01990 Schrenkiella parvula HOM05D003818 ORTHO05D004541 2.2e-30 136.0 123 60.2
AL8G26260 Arabidopsis lyrata HOM05D003818 ORTHO05D004541 3.7e-30 135.2 123 59.3
BraA04t16951Z Brassica rapa HOM05D003818 ORTHO05D004541 3.7e-30 135.2 133 54.9
CARHR264880 Cardamine hirsuta HOM05D003818 ORTHO05D004541 3.7e-30 135.2 123 60.2
MELO3C006881.2 Cucumis melo HOM05D003818 ORTHO05D004541 3.7e-30 135.2 129 56.6
Sed0012084 Sechium edule HOM05D003818 ORTHO05D004541 3.7e-30 135.2 133 57.1
AL3G42280 Arabidopsis lyrata HOM05D003818 ORTHO05D004541 4.8e-30 134.8 123 58.5
MSTRG.26327 Avicennia marina HOM05D003818 ORTHO05D004541 4.8e-30 134.8 136 58.1
PSO478G0785 Papaver somniferum HOM05D003818 ORTHO05D004541 4.8e-30 134.8 144 54.2
PSO541G1664 Papaver somniferum HOM05D003818 ORTHO05D004541 4.8e-30 134.8 144 54.2
PSO675G1382 Papaver somniferum HOM05D003818 ORTHO05D004541 4.8e-30 134.8 144 54.2
PSO782G3144 Papaver somniferum HOM05D003818 ORTHO05D004541 4.8e-30 134.8 144 54.2
Duzib084G1211 Durio zibethinus HOM05D003818 ORTHO05D004541 6.3e-30 134.4 137 54.7
ECA247G1139 Erigeron canadensis HOM05D003818 ORTHO05D004541 8.3e-30 134.0 138 55.8
BcaB06g27416 Brassica carinata HOM05D003818 ORTHO05D004541 1.1e-29 133.7 137 55.5
Thhalv10027983m.g Eutrema salsugineum HOM05D003818 ORTHO05D004541 1.4e-29 133.3 136 55.1
Nitab4.5_0017332g0010 Nicotiana tabacum HOM05D003818 ORTHO05D004541 1.4e-29 133.3 141 58.2
Aqoxy7G00432 Aquilegia oxysepala HOM05D003818 ORTHO05D004541 1.8e-29 132.9 134 54.5
A04p12880 Brassica napus HOM05D003818 ORTHO05D004541 1.8e-29 132.9 133 57.1
CsaV3_3G016860 Cucumis sativus L. HOM05D003818 ORTHO05D004541 1.8e-29 132.9 133 56.4
Manes.14G028600 Manihot esculenta HOM05D003818 ORTHO05D004541 1.8e-29 132.9 123 57.7
AT2G04630 Arabidopsis thaliana HOM05D003818 ORTHO05D004541 4.1e-29 131.7 133 55.6
Gohir.D12G260866 Gossypium hirsutum HOM05D003818 ORTHO05D004541 4.1e-29 131.7 77 77.9
MD09G1242800 Malus domestica HOM05D003818 ORTHO05D004541 7.0e-29 131.0 79 77.2
Sabra12G0102700 Salix brachista HOM05D003818 ORTHO05D004541 2.0e-28 129.4 134 56.0
SalBow5G5531 Salvia bowleyana HOM05D003818 ORTHO05D004541 1.0e-27 127.1 132 56.8
SGA_v2.0_scaffold50G18457 Striga asiatica HOM05D003818 ORTHO05D004541 5.0e-27 124.8 172 48.3
TAR375G0179 Trochodendron aralioides HOM05D003818 ORTHO05D004541 5.5e-26 121.3 118 61.0
Nitab4.5_0006124g0010 Nicotiana tabacum HOM05D003818 ORTHO05D004541 2.1e-25 119.4 121 59.5
vmacro16312 Vaccinium macrocarpon HOM05D003818 ORTHO05D004541 4.7e-25 118.2 164 47.6
Haze_26305 Corylus avellana HOM05D003818 ORTHO05D004541 1.8e-24 116.3 69 75.4
ClCG05G007860 Citrullus lanatus HOM05D003818 ORTHO05D004541 3.0e-24 115.5 168 42.9
Zm00001eb049200 Zea mays HOM05D003818 ORTHO05D004541 3.0e-24 115.5 123 58.5
Oeu021768.1 Olea europaea HOM05D003818 ORTHO05D004541 1.2e-23 113.6 123 56.9
CAN.G97.6 Capsicum annuum HOM05D003818 ORTHO05D004541 3.4e-23 112.1 108 58.3
Peaxi162Scf01172g00037 Petunia axillaris HOM05D003818 ORTHO05D004541 3.4e-23 112.1 137 54.7
CANSAT56G1911 Cannabis sativa HOM05D003818 ORTHO05D004541 4.4e-23 111.7 125 53.6
arahy.Tifrunner.gnm1.ann1.28837M Arachis hypogaea HOM05D003818 ORTHO05D004541 1.3e-22 110.2 132 47.7
Peaxi162Scf00039g01318 Petunia axillaris HOM05D003818 ORTHO05D004541 2.2e-22 109.4 137 51.8
arahy.Tifrunner.gnm1.ann1.99YBLU Arachis hypogaea HOM05D003818 ORTHO05D004541 8.3e-22 107.5 141 44.0
arahy.Tifrunner.gnm1.ann1.36XVJD Arachis hypogaea HOM05D003818 ORTHO05D004541 1.1e-21 107.1 125 55.2
Oeu030115.1 Olea europaea HOM05D003818 ORTHO05D004541 1.1e-21 107.1 137 50.4
TAR374G0228 Trochodendron aralioides HOM05D003818 ORTHO05D004541 1.2e-17 93.6 54 77.8
AagrBONN_evm.TU.Sc2ySwM_344.4292 Anthoceros agrestis HOM05D003818 ORTHO05D004541 1.6e-17 93.2 76 57.9
SalBow8G3306 Salvia bowleyana HOM05D003818 ORTHO05D004541 3.2e-13 79.0 107 53.3
SalBow8G5018 Salvia bowleyana HOM05D003818 ORTHO05D004541 3.2e-13 79.0 107 53.3
Nitab4.5_0002113g0140 Nicotiana tabacum HOM05D003818 ORTHO05D004541 4.1e-13 78.6 108 53.7
VMungo0647G2358 Vigna mungo HOM05D003818 ORTHO05D004541 7.0e-13 77.8 108 51.9
Haze_09431 Corylus avellana HOM05D003818 ORTHO05D004541 2.0e-12 76.3 123 43.9
MELO3C003707.2 Cucumis melo HOM05D003818 ORTHO05D004541 2.7e-12 75.9 51 66.7
Prupe.7G013200 Prunus persica HOM05D003818 ORTHO05D004541 1.0e-11 73.9 87 54.0
arahy.Tifrunner.gnm1.ann1.TF2L72 Arachis hypogaea HOM05D003818 ORTHO05D004541 1.7e-11 73.2 80 57.5
Oeu021769.1 Olea europaea HOM05D003818 ORTHO05D004541 1.7e-11 73.2 99 52.5
arahy.Tifrunner.gnm1.ann1.VWKV4W Arachis hypogaea HOM05D003818 ORTHO05D004541 2.5e-10 69.3 94 51.1
arahy.Tifrunner.gnm1.ann1.FSRU1U Arachis hypogaea HOM05D003818 ORTHO05D004541 3.3e-10 68.9 93 51.6
Actinidia03108 Actinidia chinensis HOM05D003818 ORTHO05D054983 5.6e-10 68.2 38 71.1
arahy.Tifrunner.gnm1.ann1.VXTW3V Arachis hypogaea HOM05D003818 ORTHO05D013217 1.8e-08 63.2 35 85.7
Os08g0426000 Oryza sativa ssp. japonica HOM05D003818 ORTHO05D295196 2.0e-07 59.7 93 44.1
PGR142G2678 Punica granatum HOM05D003818 ORTHO05D004541 2.6e-07 59.3 83 45.8


User provided reference genes

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