Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc99.1 Carica papaya HOM05D029557 ORTHO05D004820 1.9e-81 305.8 156 100.0
Cpa.g.sc94.49 Carica papaya HOM05D001053 ORTHO05D004820 2.5e-33 146.0 83 89.2
ClCG06G015680 Citrullus lanatus HOM05D001053 ORTHO05D004820 6.3e-29 131.3 82 82.9
Sed0000594 Sechium edule HOM05D001053 ORTHO05D004820 1.1e-28 130.6 82 82.9
Sed0006061 Sechium edule HOM05D001053 ORTHO05D004820 2.4e-28 129.4 82 81.7
Prupe.5G204500 Prunus persica HOM05D001053 ORTHO05D004820 9.1e-28 127.5 82 78.0
MELO3C017221.2 Cucumis melo HOM05D001053 ORTHO05D004820 1.5e-27 126.7 82 79.3
CsaV3_1G002870 Cucumis sativus L. HOM05D001053 ORTHO05D004820 1.5e-27 126.7 82 79.3
Duzib068G1187 Durio zibethinus HOM05D001053 ORTHO05D004820 2.6e-27 125.9 82 78.0
Ciclev10019240m.g Citrus clementina HOM05D001053 ORTHO05D004820 3.4e-27 125.6 82 79.3
COL.COLO4_06864 Corchorus olitorius HOM05D001053 ORTHO05D004820 3.4e-27 125.6 82 76.8
TWI81G0708 Tripterygium wilfordii HOM05D001053 ORTHO05D004820 3.4e-27 125.6 82 76.8
Duzib205G1512 Durio zibethinus HOM05D001053 ORTHO05D004820 7.7e-27 124.4 82 76.8
vmacro17607 Vaccinium macrocarpon HOM05D001053 ORTHO05D004820 7.7e-27 124.4 82 75.6
Rhsim08G0146300 Rhododendron simsii HOM05D001053 ORTHO05D004820 1.0e-26 124.0 82 75.6
GSVIVG01007870001 Vitis vinifera HOM05D001053 ORTHO05D004820 1.3e-26 123.6 82 78.0
PGR044G1429 Punica granatum HOM05D001053 ORTHO05D004820 1.7e-26 123.2 82 75.6
Hund02590 Selenicereus undatus HOM05D001053 ORTHO05D004820 1.7e-26 123.2 83 74.7
Thecc.03G101100 Theobroma cacao HOM05D001053 ORTHO05D004820 1.7e-26 123.2 82 78.0
QL10p019416 Quercus lobata HOM05D001053 ORTHO05D004820 2.2e-26 122.9 82 75.6
Atru.chr9.430 Acer truncatum HOM05D001053 ORTHO05D004820 2.9e-26 122.5 82 73.2
Eucgr.K02528 Eucalyptus grandis HOM05D001053 ORTHO05D004820 2.9e-26 122.5 82 76.8
Eucgr.L02060 Eucalyptus grandis HOM05D001053 ORTHO05D004820 2.9e-26 122.5 82 76.8
TAR629G1683 Trochodendron aralioides HOM05D001053 ORTHO05D004820 2.9e-26 122.5 83 74.7
TAR629G3345 Trochodendron aralioides HOM05D001053 ORTHO05D004820 2.9e-26 122.5 83 74.7
FAN08G0910 Fragaria x ananassa HOM05D001053 ORTHO05D004820 3.8e-26 122.1 82 75.6
FAN13G0112 Fragaria x ananassa HOM05D001053 ORTHO05D004820 3.8e-26 122.1 82 74.4
Glyma.05G021400 Glycine max HOM05D001053 ORTHO05D004820 3.8e-26 122.1 83 73.5
AUR62021569 Chenopodium quinoa HOM05D001053 ORTHO05D004820 5.0e-26 121.7 82 74.4
Haze_07717 Corylus avellana HOM05D001053 ORTHO05D004820 5.0e-26 121.7 82 78.0
Lj5C103T5 Lonicera japonica HOM05D001053 ORTHO05D004820 5.0e-26 121.7 82 74.4
Eucgr.B01265 Eucalyptus grandis HOM05D001053 ORTHO05D004820 6.5e-26 121.3 82 76.8
Sabra04G0062400 Salix brachista HOM05D001053 ORTHO05D004820 8.5e-26 120.9 82 74.4
MD06G1202300 Malus domestica HOM05D001053 ORTHO05D004820 1.1e-25 120.6 82 74.4
Nn3g17442 Nelumbo nucifera HOM05D001053 ORTHO05D004820 1.1e-25 120.6 82 72.0
AUR62008521 Chenopodium quinoa HOM05D001053 ORTHO05D004820 1.4e-25 120.2 82 75.6
AUR62021568 Chenopodium quinoa HOM05D001053 ORTHO05D004820 1.4e-25 120.2 82 75.6
FvH4_5g13910 Fragaria vesca HOM05D001053 ORTHO05D004820 1.4e-25 120.2 82 73.2
FAN18G3650 Fragaria x ananassa HOM05D001053 ORTHO05D004820 1.4e-25 120.2 82 73.2
MD14G1211400 Malus domestica HOM05D001053 ORTHO05D004820 1.4e-25 120.2 82 74.4
Gohir.A03G069900 Gossypium hirsutum HOM05D001053 ORTHO05D004820 1.9e-25 119.8 82 78.0
Gohir.D03G096500 Gossypium hirsutum HOM05D001053 ORTHO05D004820 1.9e-25 119.8 82 78.0
Gorai.003G101100 Gossypium raimondii HOM05D001053 ORTHO05D004820 1.9e-25 119.8 82 78.0
RcHm_v2.0_Chr7g0183031 Rosa chinensis HOM05D001053 ORTHO05D004820 2.5e-25 119.4 82 74.4
SGA_v2.0_scaffold313G48312 Striga asiatica HOM05D000001 ORTHO05D004820 2.5e-25 119.4 83 72.3
Cfa019326 Carpinus fangiana HOM05D001053 ORTHO05D004820 3.2e-25 119.0 81 76.5
Manes.06G085100 Manihot esculenta HOM05D001053 ORTHO05D004820 4.2e-25 118.6 82 73.2
Potri.004G092900 Populus trichocarpa HOM05D001053 ORTHO05D004820 4.2e-25 118.6 82 73.2
Glyma.17G078000 Glycine max HOM05D001053 ORTHO05D004820 5.5e-25 118.2 83 72.3
THA.LOC104801191 Tarenaya hassleriana HOM05D001053 ORTHO05D004820 5.5e-25 118.2 83 72.3
Oeu031813.2 Olea europaea HOM05D001053 ORTHO05D004820 9.4e-25 117.5 83 72.3
Dinv17408 Davidia involucrata HOM05D001053 ORTHO05D004820 1.6e-24 116.7 82 73.2
Eucgr.K02530 Eucalyptus grandis HOM05D001053 ORTHO05D004820 1.6e-24 116.7 82 74.4
Aa31LG11G2250 Aethionema arabicum HOM05D001053 ORTHO05D004820 3.6e-24 115.5 82 70.7
CANSAT80G2151 Cannabis sativa HOM05D001053 ORTHO05D004820 3.6e-24 115.5 83 69.9
Ah.11g047830 Amaranthus hybridus HOM05D001053 ORTHO05D004820 4.7e-24 115.2 82 69.5
DCAR_011558 Daucus carota HOM05D001053 ORTHO05D004820 4.7e-24 115.2 83 71.1
Hma1.2p1_0060F.1_g033160 Hydrangea macrophylla HOM05D001053 ORTHO05D004820 4.7e-24 115.2 82 72.0
Nitab4.5_0001485g0180 Nicotiana tabacum HOM05D001053 ORTHO05D004820 4.7e-24 115.2 83 67.5
Phvul.003G185200 Phaseolus vulgaris HOM05D001053 ORTHO05D004820 4.7e-24 115.2 83 71.1
VMungo1215G0855 Vigna mungo HOM05D001053 ORTHO05D004820 4.7e-24 115.2 83 69.9
Nitab4.5_0003660g0060 Nicotiana tabacum HOM05D001053 ORTHO05D004820 6.1e-24 114.8 83 72.3
Nitab4.5_0012564g0010 Nicotiana tabacum HOM05D001053 ORTHO05D004820 6.1e-24 114.8 83 66.3
Carub.0008s2175 Capsella rubella HOM05D001053 ORTHO05D004820 1.0e-23 114.0 83 68.7
Ca_21779_v3 Cicer arietinum L. HOM05D001053 ORTHO05D004820 1.0e-23 114.0 82 73.2
PSO017G5497 Papaver somniferum HOM05D001053 ORTHO05D004820 1.0e-23 114.0 83 67.5
AL8G37710 Arabidopsis lyrata HOM05D001053 ORTHO05D004820 1.4e-23 113.6 83 67.5
SalBow5G2522 Salvia bowleyana HOM05D001053 ORTHO05D004820 1.8e-23 113.2 83 69.9
EL10Ac5g11123 Beta vulgaris HOM05D001053 ORTHO05D004820 3.0e-23 112.5 82 69.5
Cc00_g07600 Coffea canephora HOM05D001053 ORTHO05D004820 3.0e-23 112.5 83 68.7
Migut.I00311 Erythranthe guttata HOM05D001053 ORTHO05D004820 3.0e-23 112.5 83 68.7
Os07g0602200 Oryza sativa ssp. japonica HOM05D001053 ORTHO05D004820 3.9e-23 112.1 82 67.1
AT5G61060 Arabidopsis thaliana HOM05D001053 ORTHO05D004820 6.7e-23 111.3 83 66.3
Lalb_Chr12g0197171 Lupinus albus HOM05D001053 ORTHO05D004820 6.7e-23 111.3 83 66.3
Thhalv10003787m.g Eutrema salsugineum HOM05D001053 ORTHO05D004820 8.8e-23 110.9 83 66.3
SalBow5G2451 Salvia bowleyana HOM05D001053 ORTHO05D004820 8.8e-23 110.9 83 68.7
Lsat_1_v5_gn_4_111000 Lactuca sativa HOM05D001053 ORTHO05D004820 1.1e-22 110.5 82 67.1
Aqoxy3G03637 Aquilegia oxysepala HOM05D001053 ORTHO05D004820 1.5e-22 110.2 83 66.3
AT5G61070 Arabidopsis thaliana HOM05D001053 ORTHO05D004820 1.5e-22 110.2 83 66.3
A02p41350 Brassica napus HOM05D001053 ORTHO05D004820 1.5e-22 110.2 83 66.3
BraA02t09080Z Brassica rapa HOM05D001053 ORTHO05D004820 1.5e-22 110.2 83 66.3
A02p41380 Brassica napus HOM05D001053 ORTHO05D004820 2.0e-22 109.8 83 66.3
C02p61330 Brassica napus HOM05D001053 ORTHO05D004820 2.6e-22 109.4 83 65.1
CARHR274760 Cardamine hirsuta HOM05D001053 ORTHO05D004820 2.6e-22 109.4 83 65.1
CAN.G1228.29 Capsicum annuum HOM05D001053 ORTHO05D004820 3.3e-22 109.0 110 52.7
TPR.G2048 Trifolium pratense HOM05D001053 ORTHO05D004820 5.7e-22 108.2 82 68.3
Eucgr.L02064 Eucalyptus grandis HOM05D001053 ORTHO05D004820 7.4e-22 107.8 82 70.7
CARHR274770 Cardamine hirsuta HOM05D001053 ORTHO05D004820 9.7e-22 107.5 83 65.1
AL8G37720 Arabidopsis lyrata HOM05D001053 ORTHO05D004820 1.7e-21 106.7 83 65.1
Lj4g0023799 Lotus japonicus HOM05D001053 ORTHO05D004820 2.2e-21 106.3 82 65.9
Sp2g24350 Schrenkiella parvula HOM05D001053 ORTHO05D004820 2.2e-21 106.3 83 63.9
ECA232G4674 Erigeron canadensis HOM05D001053 ORTHO05D004820 2.8e-21 105.9 83 65.1
Migut.D01742 Erythranthe guttata HOM05D001053 ORTHO05D004820 2.8e-21 105.9 83 67.5
HanXRQChr16g0502421 Helianthus annuus HOM05D001053 ORTHO05D004820 3.7e-21 105.5 82 63.4
HPP92_006052 Vanilla planifolia HOM05D001053 ORTHO05D004820 3.7e-21 105.5 82 63.4
arahy.Tifrunner.gnm1.ann1.T7KHNQ Arachis hypogaea HOM05D001053 ORTHO05D004820 4.8e-21 105.1 82 69.5
PSO478G4502 Papaver somniferum HOM05D001053 ORTHO05D004820 4.8e-21 105.1 83 66.3
Psat0s3618g0040 Pisum sativum HOM05D001053 ORTHO05D004820 4.8e-21 105.1 82 69.5
SalBow1G6805 Salvia bowleyana HOM05D001053 ORTHO05D004820 6.3e-21 104.8 83 63.9
SalBow1G7771 Salvia bowleyana HOM05D001053 ORTHO05D004820 6.3e-21 104.8 83 63.9
A03p46750 Brassica napus HOM05D001053 ORTHO05D004820 8.2e-21 104.4 83 61.4
BraA03t13797Z Brassica rapa HOM05D001053 ORTHO05D004820 8.2e-21 104.4 83 61.4
Migut.D01491 Erythranthe guttata HOM05D001053 ORTHO05D004820 8.2e-21 104.4 83 66.3
Zm00001eb108570 Zea mays HOM05D001053 ORTHO05D004820 8.2e-21 104.4 82 65.9
arahy.Tifrunner.gnm1.ann1.ZD7DCY Arachis hypogaea HOM05D001053 ORTHO05D004820 1.4e-20 103.6 82 68.3
BcaC06g33180 Brassica carinata HOM05D001053 ORTHO05D004820 1.8e-20 103.2 83 60.2
C07p44790 Brassica napus HOM05D001053 ORTHO05D004820 1.8e-20 103.2 83 60.2
C09p08060 Brassica napus HOM05D001053 ORTHO05D004820 1.8e-20 103.2 83 65.1
BolC7t45003H Brassica oleracea HOM05D001053 ORTHO05D004820 1.8e-20 103.2 83 60.2
PSO017G2770 Papaver somniferum HOM05D001053 ORTHO05D004820 1.8e-20 103.2 83 65.1
MSTRG.22987 Avicennia marina HOM05D001053 ORTHO05D004820 3.1e-20 102.4 77 64.9
BolC2t12181H Brassica oleracea HOM05D001053 ORTHO05D004820 3.1e-20 102.4 77 64.9
A09p07210 Brassica napus HOM05D001053 ORTHO05D004820 4.1e-20 102.1 83 63.9
BolC9t53720H Brassica oleracea HOM05D001053 ORTHO05D004820 4.1e-20 102.1 83 63.9
Medtr4g109500 Medicago truncatula HOM05D001053 ORTHO05D004820 7.0e-20 101.3 82 63.4
Solyc03g115150.4 Solanum lycopersicum HOM05D001053 ORTHO05D004820 9.1e-20 100.9 83 61.4
BcaC03g18073 Brassica carinata HOM05D001053 ORTHO05D004820 1.2e-19 100.5 77 63.6
Migut.D01741 Erythranthe guttata HOM05D001053 ORTHO05D004820 1.2e-19 100.5 83 65.1
Carub.0008s2176 Capsella rubella HOM05D001053 ORTHO05D004820 1.5e-19 100.1 83 60.2
SEGI_24328 Sequoiadendron giganteum HOM05D001053 ORTHO05D004820 2.0e-19 99.8 82 58.5
Migut.D01738 Erythranthe guttata HOM05D001053 ORTHO05D004820 3.5e-19 99.0 83 63.9
ATR0064G039 Amborella trichopoda HOM05D001053 ORTHO05D004820 4.5e-19 98.6 82 65.9
Sopen03g034210 Solanum pennellii HOM05D001053 ORTHO05D004820 4.5e-19 98.6 83 60.2
BraA09t36371Z Brassica rapa HOM05D001053 ORTHO05D004820 5.9e-19 98.2 83 61.4
ECA232G3750 Erigeron canadensis HOM05D001053 ORTHO05D004820 6.5e-18 94.7 82 58.5
Cpa.g.sc27.160 Carica papaya HOM05D029557 ORTHO05D117949 2.1e-16 89.7 71 66.2
ECA247G0276 Erigeron canadensis HOM05D001053 ORTHO05D004820 3.6e-16 89.0 82 58.5
CBR_g20016 Chara braunii HOM05D001053 ORTHO05D004820 6.1e-16 88.2 83 55.4
SMO203G0267 Selaginella moellendorffii HOM05D001053 ORTHO05D004820 2.3e-15 86.3 83 53.0
BcaC04g23464 Brassica carinata HOM05D001053 ORTHO05D004820 5.2e-15 85.1 72 62.5
Sc04g0004320 Simmondsia chinensis HOM05D001053 ORTHO05D004820 8.8e-15 84.3 63 68.3
BcaB07g34221 Brassica carinata HOM05D001053 ORTHO05D004820 2.6e-14 82.8 62 67.7
Mapoly0049s0028 Marchantia polymorpha HOM05D001053 ORTHO05D004820 6.3e-13 78.2 83 47.0
Cpa.g.sc122.5 Carica papaya HOM05D029557 ORTHO05D118894 1.1e-12 77.4 59 67.8
Pp3c14_21020 Physcomitrium patens HOM05D001053 ORTHO05D004820 1.8e-12 76.6 83 47.0
Cpa.g.sc140.13 Carica papaya HOM05D001053 ORTHO05D004820 4.1e-12 75.5 42 90.5
Cpa.g.sc67.15 Carica papaya HOM05D001053 ORTHO05D004820 1.2e-11 73.9 42 88.1
Cpa.g.sc140.11 Carica papaya HOM05D001053 ORTHO05D117534 1.6e-11 73.6 49 75.5
PSO017G7272 Papaver somniferum HOM05D001053 ORTHO05D004820 1.6e-11 73.6 83 47.0
CDE02G0998 Ceratophyllum demersum HOM05D001053 ORTHO05D021119 4.5e-11 72.0 50 68.0
PSO017G1932 Papaver somniferum HOM05D001053 ORTHO05D004820 7.7e-11 71.2 84 42.9
unitig_26.g9658 Utricularia gibba HOM05D001053 ORTHO05D004820 1.7e-10 70.1 50 70.0
Cpa.g.sc99.3 Carica papaya HOM05D001053 ORTHO05D004820 2.5e-09 66.2 39 84.6
Cpa.g.sc140.12 Carica papaya HOM05D029557 ORTHO05D119406 7.2e-09 64.7 50 64.0
Cpa.g.sc99.2 Carica papaya HOM05D001053 ORTHO05D004820 4.0e-07 58.9 33 87.9
PRCOL_00001547 Prasinoderma coloniale HOM05D001053 ORTHO05D007087 6.7e-07 58.2 82 40.2
Cpa.g.c36738 Carica papaya HOM05D001053 ORTHO05D004820 2.0e-06 56.6 35 80.0
Cpa.g.sc67.16 Carica papaya HOM05D001053 ORTHO05D120880 5.7e-06 55.1 31 83.9
Zm00001eb230120 Zea mays HOM05D001374 ORTHO05D445005 5.7e-06 55.1 45 60.0
Pp3c10_16170 Physcomitrium patens HOM05D001053 ORTHO05D007087 9.7e-06 54.3 83 34.9
PRCOL_00005198 Prasinoderma coloniale HOM05D001053 ORTHO05D007087 9.7e-06 54.3 56 51.8


User provided reference genes

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