Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc97.36 Carica papaya HOM05D005249 ORTHO05D006457 3.0e-96 355.1 176 100.0
Thecc.07G044000 Theobroma cacao HOM05D005249 ORTHO05D006457 3.6e-73 278.5 163 82.2
Gohir.D01G064800 Gossypium hirsutum HOM05D005249 ORTHO05D006457 8.0e-73 277.3 163 83.4
Gorai.002G085700 Gossypium raimondii HOM05D005249 ORTHO05D006457 8.0e-73 277.3 163 83.4
Gohir.A01G077300 Gossypium hirsutum HOM05D005249 ORTHO05D006457 3.0e-72 275.4 162 83.3
Haze_09646 Corylus avellana HOM05D005249 ORTHO05D006457 2.0e-71 272.7 167 79.0
Cfa020386 Carpinus fangiana HOM05D005249 ORTHO05D006457 2.6e-71 272.3 167 79.0
Ciclev10009689m.g Citrus clementina HOM05D005249 ORTHO05D006457 5.7e-71 271.2 163 83.4
Manes.03G127000 Manihot esculenta HOM05D005249 ORTHO05D006457 2.2e-70 269.2 174 77.6
COL.COLO4_09631 Corchorus olitorius HOM05D005249 ORTHO05D006457 6.3e-70 267.7 162 82.1
Gohir.D05G366500 Gossypium hirsutum HOM05D005249 ORTHO05D006457 8.3e-70 267.3 163 81.0
Manes.15G073900 Manihot esculenta HOM05D005249 ORTHO05D006457 1.1e-69 266.9 174 77.6
Sp1g37640 Schrenkiella parvula HOM05D005249 ORTHO05D006457 3.1e-69 265.4 176 76.1
Duzib213G0461 Durio zibethinus HOM05D005249 ORTHO05D006457 4.1e-69 265.0 162 80.9
TWI38G0945 Tripterygium wilfordii HOM05D005249 ORTHO05D006457 5.4e-69 264.6 167 77.8
QL08p011891 Quercus lobata HOM05D005249 ORTHO05D006457 9.1e-69 263.8 166 76.5
QL08p012062 Quercus lobata HOM05D005249 ORTHO05D006457 9.1e-69 263.8 166 76.5
GSVIVG01002001001 Vitis vinifera HOM05D005249 ORTHO05D006457 2.0e-68 262.7 167 76.6
Lj8A167T50 Lonicera japonica HOM05D005249 ORTHO05D006457 3.5e-68 261.9 179 75.4
A06p02830 Brassica napus HOM05D005249 ORTHO05D006457 4.5e-68 261.5 175 76.6
BraA06t23490Z Brassica rapa HOM05D005249 ORTHO05D006457 4.5e-68 261.5 175 76.6
Aa31LG10G3330 Aethionema arabicum HOM05D005249 ORTHO05D006457 7.7e-68 260.8 164 78.7
Thhalv10011819m.g Eutrema salsugineum HOM05D005249 ORTHO05D006457 1.3e-67 260.0 176 75.0
BcaC08g43263 Brassica carinata HOM05D005249 ORTHO05D006457 2.3e-67 259.2 175 73.7
C06p06070 Brassica napus HOM05D005249 ORTHO05D006457 2.3e-67 259.2 175 73.7
BolC6t35720H Brassica oleracea HOM05D005249 ORTHO05D006457 2.3e-67 259.2 175 73.7
FvH4_3g22190 Fragaria vesca HOM05D005249 ORTHO05D006457 2.9e-67 258.8 167 74.3
Sabra16G0285800 Salix brachista HOM05D005249 ORTHO05D006457 3.8e-67 258.5 167 77.8
Potri.001G420900 Populus trichocarpa HOM05D005249 ORTHO05D006457 5.0e-67 258.1 167 77.2
A05p19870 Brassica napus HOM05D005249 ORTHO05D006457 6.5e-67 257.7 175 74.9
BraA05t20892Z Brassica rapa HOM05D005249 ORTHO05D006457 6.5e-67 257.7 175 74.9
Eucgr.F03446 Eucalyptus grandis HOM05D005249 ORTHO05D006457 6.5e-67 257.7 178 73.6
Gohir.A04G019300 Gossypium hirsutum HOM05D005249 ORTHO05D006457 1.1e-66 256.9 155 82.6
Dinv22281 Davidia involucrata HOM05D005249 ORTHO05D006457 1.5e-66 256.5 179 72.6
CSS0021065 Camellia sinensis var. sinensis HOM05D005249 ORTHO05D006457 1.9e-66 256.1 171 74.9
Carub.0001s3985 Capsella rubella HOM05D005249 ORTHO05D006457 1.9e-66 256.1 176 75.0
CiPaw.11G187100 Carya illinoinensis HOM05D005249 ORTHO05D006457 4.2e-66 255.0 167 74.9
Hma1.2p1_1271F.1_g271820 Hydrangea macrophylla HOM05D005249 ORTHO05D006457 7.2e-66 254.2 168 73.8
Hma1.2p1_1609F.1_g293423 Hydrangea macrophylla HOM05D005249 ORTHO05D006457 7.2e-66 254.2 168 73.8
AT1G50900 Arabidopsis thaliana HOM05D005249 ORTHO05D006457 3.6e-65 251.9 154 81.2
Prupe.4G209000 Prunus persica HOM05D005249 ORTHO05D006457 3.6e-65 251.9 174 70.1
BcaB07g33531 Brassica carinata HOM05D005249 ORTHO05D006457 4.7e-65 251.5 175 73.7
THA.LOC104798778 Tarenaya hassleriana HOM05D005249 ORTHO05D006457 1.0e-64 250.4 176 71.6
RcHm_v2.0_Chr5g0038151 Rosa chinensis HOM05D005249 ORTHO05D006457 2.3e-64 249.2 169 72.2
C05p33210 Brassica napus HOM05D005249 ORTHO05D006457 3.0e-64 248.8 164 76.8
PGR031G1044 Punica granatum HOM05D005249 ORTHO05D006457 3.0e-64 248.8 167 74.3
A05p28310 Brassica napus HOM05D005249 ORTHO05D006457 5.2e-64 248.1 168 80.4
BraA05t21713Z Brassica rapa HOM05D005249 ORTHO05D006457 5.2e-64 248.1 168 80.4
Thhalv10021639m.g Eutrema salsugineum HOM05D005249 ORTHO05D006457 5.2e-64 248.1 178 76.4
Sp3g18550 Schrenkiella parvula HOM05D005249 ORTHO05D006457 5.2e-64 248.1 166 79.5
AL8G37450 Arabidopsis lyrata HOM05D005249 ORTHO05D006457 6.8e-64 247.7 153 79.1
Gorai.009G425200 Gossypium raimondii HOM05D005249 ORTHO05D006457 8.8e-64 247.3 203 65.0
HanXRQChr05g0159111 Helianthus annuus HOM05D005249 ORTHO05D006457 8.8e-64 247.3 164 76.8
C05p43800 Brassica napus HOM05D005249 ORTHO05D006457 1.2e-63 246.9 169 78.7
BolC5t33095H Brassica oleracea HOM05D005249 ORTHO05D006457 1.2e-63 246.9 168 79.8
MD03G1207700 Malus domestica HOM05D005249 ORTHO05D006457 1.5e-63 246.5 167 71.3
AL1G58630 Arabidopsis lyrata HOM05D005249 ORTHO05D006457 2.0e-63 246.1 148 80.4
TAR626G0063 Trochodendron aralioides HOM05D005249 ORTHO05D006457 5.7e-63 244.6 159 74.8
Aqoxy1G03622 Aquilegia oxysepala HOM05D005249 ORTHO05D006457 1.3e-62 243.4 178 69.1
CANSAT21G2135 Cannabis sativa HOM05D005249 ORTHO05D006457 1.3e-62 243.4 156 77.6
Carub.0003s2051 Capsella rubella HOM05D005249 ORTHO05D006457 1.3e-62 243.4 164 78.0
arahy.Tifrunner.gnm1.ann1.I048YJ Arachis hypogaea HOM05D005249 ORTHO05D006457 4.9e-62 241.5 181 70.2
VMungo0540G0590 Vigna mungo HOM05D005249 ORTHO05D006457 1.1e-61 240.4 171 73.7
TAR624G0120 Trochodendron aralioides HOM05D005249 ORTHO05D006457 3.1e-61 238.8 174 70.1
arahy.Tifrunner.gnm1.ann1.EK5LIC Arachis hypogaea HOM05D005249 ORTHO05D006457 4.1e-61 238.4 185 69.7
Cc05_g13500 Coffea canephora HOM05D005249 ORTHO05D006457 7.0e-61 237.7 152 78.9
Lsat_1_v5_gn_5_5181 Lactuca sativa HOM05D005249 ORTHO05D006457 2.0e-60 236.1 169 70.4
Solyc10g006370.3 Solanum lycopersicum HOM05D005249 ORTHO05D006457 3.5e-60 235.3 168 69.6
CsaV3_3G005280 Cucumis sativus L. HOM05D005249 ORTHO05D006457 4.5e-60 235.0 156 76.3
Lalb_Chr15g0080371 Lupinus albus HOM05D005249 ORTHO05D006457 4.5e-60 235.0 155 76.8
Peaxi162Scf00387g00046 Petunia axillaris HOM05D005249 ORTHO05D006457 5.9e-60 234.6 167 71.3
Glyma.08G312800 Glycine max HOM05D005249 ORTHO05D006457 1.0e-59 233.8 183 69.4
Migut.M01785 Erythranthe guttata HOM05D005249 ORTHO05D006457 1.7e-59 233.0 148 77.0
Phvul.006G038600 Phaseolus vulgaris HOM05D005249 ORTHO05D006457 1.7e-59 233.0 168 71.4
MSTRG.15162 Avicennia marina HOM05D005249 ORTHO05D006457 2.3e-59 232.6 183 70.5
Lj6g0004310 Lotus japonicus HOM05D005249 ORTHO05D006457 2.3e-59 232.6 179 70.4
MELO3C025397.2 Cucumis melo HOM05D005249 ORTHO05D006457 3.8e-59 231.9 156 75.0
ClCG10G005560 Citrullus lanatus HOM05D005249 ORTHO05D006457 6.6e-59 231.1 149 75.8
SGA_v2.0_scaffold258G45797 Striga asiatica HOM05D005249 ORTHO05D006457 6.6e-59 231.1 149 75.8
Glyma.18G102100 Glycine max HOM05D005249 ORTHO05D006457 1.5e-58 229.9 172 70.9
Atru.chr2.3277 Acer truncatum HOM05D005249 ORTHO05D006457 1.9e-58 229.6 177 68.9
BcaB02g11192 Brassica carinata HOM05D005249 ORTHO05D006457 1.9e-58 229.6 180 70.6
Ca_08298_v3 Cicer arietinum L. HOM05D005249 ORTHO05D006457 1.9e-58 229.6 178 70.2
unitig_578.g16003 Utricularia gibba HOM05D005249 ORTHO05D006457 5.6e-58 228.0 160 71.2
MBI02_g28338_MAGBIO Magnolia biondii HOM05D005249 ORTHO05D006457 7.3e-58 227.6 178 65.2
PGSC0003DMG400014394 Solanum tuberosum HOM05D005249 ORTHO05D006457 7.3e-58 227.6 168 67.3
Oeu042920.1 Olea europaea HOM05D005249 ORTHO05D006457 9.5e-58 227.3 131 82.4
Medtr3g019320 Medicago truncatula HOM05D005249 ORTHO05D006457 1.2e-57 226.9 181 68.0
CDE02G4799 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 1.6e-57 226.5 159 72.3
Oeu062605.1 Olea europaea HOM05D005249 ORTHO05D006457 4.7e-57 224.9 196 62.2
Sed0007548 Sechium edule HOM05D005249 ORTHO05D006457 8.0e-57 224.2 150 76.0
AUR62015702 Chenopodium quinoa HOM05D005249 ORTHO05D006457 3.0e-56 222.2 168 69.0
Nn1g07102 Nelumbo nucifera HOM05D005249 ORTHO05D006457 3.0e-56 222.2 157 69.4
Actinidia09913 Actinidia chinensis HOM05D005249 ORTHO05D006457 5.2e-56 221.5 170 70.0
ATR0752G229 Amborella trichopoda HOM05D005249 ORTHO05D006457 8.9e-56 220.7 151 74.2
Actinidia05108 Actinidia chinensis HOM05D005249 ORTHO05D006457 1.2e-55 220.3 172 68.6
Nitab4.5_0005048g0030 Nicotiana tabacum HOM05D005249 ORTHO05D006457 1.2e-55 220.3 173 68.8
PSO210G5271 Papaver somniferum HOM05D005249 ORTHO05D006457 1.2e-55 220.3 166 66.9
Rhsim04G0001800 Rhododendron simsii HOM05D005249 ORTHO05D006457 1.2e-55 220.3 181 68.5
Psat5g216840 Pisum sativum HOM05D005249 ORTHO05D006457 1.5e-55 219.9 152 74.3
ECA246G1486 Erigeron canadensis HOM05D005249 ORTHO05D006457 3.4e-55 218.8 180 61.7
Sc16g0006280 Simmondsia chinensis HOM05D005249 ORTHO05D006457 7.5e-55 217.6 159 71.1
AUR62020502 Chenopodium quinoa HOM05D005249 ORTHO05D006457 1.3e-54 216.9 168 67.9
BcaB07g33530 Brassica carinata HOM05D005249 ORTHO05D006457 1.7e-54 216.5 149 73.8
PSO832G4498 Papaver somniferum HOM05D005249 ORTHO05D006457 1.7e-54 216.5 168 66.1
CDE05G2685 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 2.2e-54 216.1 125 83.2
Sopen10g002320 Solanum pennellii HOM05D005249 ORTHO05D006457 3.7e-54 215.3 145 71.0
Ah.06g182920 Amaranthus hybridus HOM05D005249 ORTHO05D006457 1.1e-53 213.8 169 66.9
CAN.G1781.9 Capsicum annuum HOM05D005249 ORTHO05D006457 1.8e-53 213.0 151 71.5
FAN11G3900 Fragaria x ananassa HOM05D005249 ORTHO05D006340 7.0e-53 211.1 277 44.4
Dinv40734 Davidia involucrata HOM05D005249 ORTHO05D006457 1.2e-52 210.3 141 73.0
FAN16G3206 Fragaria x ananassa HOM05D005249 ORTHO05D006340 2.7e-52 209.1 277 43.7
EL10Ac4g07899 Beta vulgaris HOM05D005249 ORTHO05D006457 6.6e-51 204.5 178 63.5
HPP92_017607 Vanilla planifolia HOM05D005249 ORTHO05D006457 1.5e-50 203.4 181 62.4
CDE05G0273 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 6.2e-49 198.0 162 62.3
SMO137G0373 Selaginella moellendorffii HOM05D005249 ORTHO05D006457 1.1e-48 197.2 144 66.7
Zm00001eb322850 Zea mays HOM05D005249 ORTHO05D006457 4.0e-48 195.3 146 68.5
CDE11G0574 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 8.9e-48 194.1 173 61.8
Os07g0520800 Oryza sativa ssp. japonica HOM05D005249 ORTHO05D006457 2.2e-46 189.5 140 71.4
SEGI_08050 Sequoiadendron giganteum HOM05D005249 ORTHO05D006457 2.4e-45 186.0 120 75.8
vmacro09735 Vaccinium macrocarpon HOM05D005249 ORTHO05D006457 3.3e-42 175.6 188 55.9
CBR_g12744 Chara braunii HOM05D005249 ORTHO05D006457 5.6e-42 174.9 123 68.3
BcaB06g26188 Brassica carinata HOM05D005249 ORTHO05D006457 4.7e-41 171.8 175 58.3
Nitab4.5_0001393g0170 Nicotiana tabacum HOM05D005249 ORTHO05D006457 1.1e-40 170.6 174 59.2
Mapoly0006s0110 Marchantia polymorpha HOM05D005249 ORTHO05D006457 4.0e-40 168.7 129 65.1
Pp3c5_16520 Physcomitrium patens HOM05D005249 ORTHO05D006457 1.2e-39 167.2 147 57.8
CARHR096310 Cardamine hirsuta HOM05D005249 ORTHO05D006457 2.3e-35 152.9 87 88.5
Rhsim04G0000700 Rhododendron simsii HOM05D005249 ORTHO05D006457 3.3e-34 149.1 87 82.8
CARHR040950 Cardamine hirsuta HOM05D005249 ORTHO05D006457 7.3e-34 147.9 87 82.8
Cfa020388 Carpinus fangiana HOM05D005249 ORTHO05D006457 3.1e-32 142.5 82 85.4
Cre12.g551950 Chlamydomonas reinhardtii HOM05D005249 ORTHO05D006457 5.2e-32 141.7 120 55.0
FAN21G3293 Fragaria x ananassa HOM05D005249 ORTHO05D006457 3.4e-31 139.0 82 82.9
TPR.G3850 Trifolium pratense HOM05D005249 ORTHO05D006457 6.0e-28 128.3 82 79.3
PRCOL_00000858 Prasinoderma coloniale HOM05D005249 ORTHO05D006457 8.7e-27 124.4 100 56.0
Glyma.09G102000 Glycine max HOM05D005249 ORTHO05D006457 9.6e-26 120.9 87 72.4
MCO16G329 Micromonas commoda HOM05D005249 ORTHO05D006457 2.4e-24 116.3 100 56.0
CARHR040940 Cardamine hirsuta HOM05D005249 ORTHO05D006457 9.0e-24 114.4 90 66.7
BcaC05g27384 Brassica carinata HOM05D005249 ORTHO05D006457 8.4e-22 107.8 89 62.9
CARHR096330 Cardamine hirsuta HOM05D005249 ORTHO05D006457 1.3e-19 100.5 89 62.9
Nn1g07101 Nelumbo nucifera HOM05D005249 ORTHO05D006457 1.1e-16 90.9 71 59.2
Atru.chr2.3276 Acer truncatum HOM05D005249 ORTHO05D006457 4.0e-16 89.0 54 81.5
BcaC05g27382 Brassica carinata HOM05D005249 ORTHO05D006457 3.4e-15 85.9 54 79.6
CBR_g602 Chara braunii HOM05D005249 ORTHO05D006457 1.9e-10 70.1 69 43.5
FvH4_3g22200 Fragaria vesca HOM05D000371 ORTHO05D006340 4.3e-10 68.9 70 51.4
FAN11G2388 Fragaria x ananassa HOM05D000371 ORTHO05D006340 4.3e-10 68.9 70 50.0
FAN16G2982 Fragaria x ananassa HOM05D000371 ORTHO05D006340 1.8e-08 63.5 70 48.6
Hund02097 Selenicereus undatus HOM05D000420 ORTHO05D000110 1.8e-08 63.5 73 52.1
RcHm_v2.0_Chr5g0038161 Rosa chinensis HOM05D000371 ORTHO05D006340 1.5e-07 60.5 94 39.4


User provided reference genes

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