Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc96.6 Carica papaya HOM05D004730 ORTHO05D005705 6.1e-194 680.6 343 100.0
Manes.01G246700 Manihot esculenta HOM05D004730 ORTHO05D005705 1.1e-147 526.9 338 80.8
COL.COLO4_06293 Corchorus olitorius HOM05D004730 ORTHO05D005705 1.5e-144 516.5 338 79.0
Sabra02G0142200 Salix brachista HOM05D004730 ORTHO05D005705 2.6e-144 515.8 338 78.7
Thecc.01G343400 Theobroma cacao HOM05D004730 ORTHO05D005705 3.4e-144 515.4 338 79.9
Ciclev10019746m.g Citrus clementina HOM05D004730 ORTHO05D005705 5.8e-144 514.6 337 78.3
Potri.002G170100 Populus trichocarpa HOM05D004730 ORTHO05D005705 7.6e-144 514.2 337 78.6
Gorai.004G152100 Gossypium raimondii HOM05D004730 ORTHO05D005705 4.9e-143 511.5 338 79.0
Gohir.A08G125600 Gossypium hirsutum HOM05D004730 ORTHO05D005705 8.4e-143 510.8 338 78.7
Gohir.D08G146500 Gossypium hirsutum HOM05D004730 ORTHO05D005705 5.4e-142 508.1 338 78.7
Atru.chr5.659 Acer truncatum HOM05D004730 ORTHO05D005705 7.1e-142 507.7 337 79.2
THA.LOC104817359 Tarenaya hassleriana HOM05D004730 ORTHO05D005705 1.6e-141 506.5 337 78.0
Duzib138G0598 Durio zibethinus HOM05D004730 ORTHO05D005705 2.3e-140 502.7 338 77.2
CiPaw.01G075800 Carya illinoinensis HOM05D004730 ORTHO05D005705 1.1e-139 500.4 337 77.7
MD07G1148700 Malus domestica HOM05D004730 ORTHO05D005705 1.1e-139 500.4 337 76.6
Prupe.2G187200 Prunus persica HOM05D004730 ORTHO05D005705 3.3e-139 498.8 337 77.7
Cfa003807 Carpinus fangiana HOM05D004730 ORTHO05D005705 7.3e-139 497.7 337 76.3
GSVIVG01027092001 Vitis vinifera HOM05D004730 ORTHO05D005705 1.8e-137 493.0 344 75.3
Lalb_Chr21g0314351 Lupinus albus HOM05D004730 ORTHO05D005705 2.4e-137 492.7 337 76.6
Haze_15648 Corylus avellana HOM05D004730 ORTHO05D005705 6.9e-137 491.1 336 75.9
FvH4_7g16330 Fragaria vesca HOM05D004730 ORTHO05D005705 6.9e-137 491.1 337 77.2
FAN06G4548 Fragaria x ananassa HOM05D004730 ORTHO05D005705 6.9e-137 491.1 337 77.2
FAN06G3857 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.0e-136 489.6 337 76.9
Dinv35110 Davidia involucrata HOM05D004730 ORTHO05D005705 5.8e-136 488.0 346 74.6
FAN01G1335 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.7e-135 486.5 337 76.3
Duzib133G1016 Durio zibethinus HOM05D004730 ORTHO05D005705 2.9e-135 485.7 338 75.1
FAN03G1043 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.9e-135 485.7 337 76.6
ClCG06G002220 Citrullus lanatus HOM05D004730 ORTHO05D005705 3.8e-135 485.3 338 74.6
FAN10G2003 Fragaria x ananassa HOM05D004730 ORTHO05D005705 6.4e-135 484.6 337 76.3
Dinv32581 Davidia involucrata HOM05D004730 ORTHO05D005705 3.2e-134 482.3 346 74.0
Nn1g01877 Nelumbo nucifera HOM05D004730 ORTHO05D005705 1.2e-133 480.3 344 73.3
Thhalv10005894m.g Eutrema salsugineum HOM05D004730 ORTHO05D005705 1.6e-133 479.9 337 75.1
Lj3g0019549 Lotus japonicus HOM05D004730 ORTHO05D005705 1.6e-133 479.9 337 74.8
RcHm_v2.0_Chr1g0359341 Rosa chinensis HOM05D004730 ORTHO05D005705 2.7e-133 479.2 337 76.0
MELO3C022308.2 Cucumis melo HOM05D004730 ORTHO05D005705 6.0e-133 478.0 337 73.6
CANSAT56G1965 Cannabis sativa HOM05D004730 ORTHO05D005705 1.3e-132 476.9 336 72.6
PGR031G3931 Punica granatum HOM05D004730 ORTHO05D005705 2.3e-132 476.1 338 74.0
Sp5g01680 Schrenkiella parvula HOM05D004730 ORTHO05D005705 2.3e-132 476.1 337 74.2
CsaV3_6G008300 Cucumis sativus L. HOM05D004730 ORTHO05D005705 6.6e-132 474.6 337 72.7
VMungo1080G1812 Vigna mungo HOM05D004730 ORTHO05D005705 6.6e-132 474.6 337 74.2
DCAR_005384 Daucus carota HOM05D004730 ORTHO05D005705 1.1e-131 473.8 345 73.6
Medtr3g018770 Medicago truncatula HOM05D004730 ORTHO05D005705 1.1e-131 473.8 338 75.1
TAR374G0734 Trochodendron aralioides HOM05D004730 ORTHO05D005705 4.3e-131 471.9 345 72.2
Actinidia10133 Actinidia chinensis HOM05D004730 ORTHO05D005705 9.6e-131 470.7 344 73.0
CARHR172020 Cardamine hirsuta HOM05D004730 ORTHO05D005705 9.6e-131 470.7 340 72.9
MD01G1079900 Malus domestica HOM05D004730 ORTHO05D005705 9.6e-131 470.7 337 73.3
Glyma.11G153900 Glycine max HOM05D004730 ORTHO05D005705 1.6e-130 469.9 337 73.9
Hund16708 Selenicereus undatus HOM05D004730 ORTHO05D005705 3.6e-130 468.8 344 70.9
Carub.0005s2846 Capsella rubella HOM05D004730 ORTHO05D005705 6.2e-130 468.0 337 73.3
MSTRG.17337 Avicennia marina HOM05D004730 ORTHO05D005705 8.1e-130 467.6 345 72.2
Carub.0003s3432 Capsella rubella HOM05D004730 ORTHO05D005705 8.1e-130 467.6 337 73.3
Psat5g217520 Pisum sativum HOM05D004730 ORTHO05D005705 3.1e-129 465.7 338 73.7
AT3G61710 Arabidopsis thaliana HOM05D004730 ORTHO05D005705 9.0e-129 464.2 338 73.7
TPR.G9866 Trifolium pratense HOM05D004730 ORTHO05D005705 1.2e-128 463.8 345 72.5
arahy.Tifrunner.gnm1.ann1.DU0G1C Arachis hypogaea HOM05D004730 ORTHO05D005705 1.5e-128 463.4 342 72.5
Phvul.005G029900 Phaseolus vulgaris HOM05D004730 ORTHO05D005705 2.6e-128 462.6 337 72.4
Aa31LG10G15710 Aethionema arabicum HOM05D004730 ORTHO05D005705 4.5e-128 461.8 334 72.5
AL5G44220 Arabidopsis lyrata HOM05D004730 ORTHO05D005705 4.5e-128 461.8 338 73.1
Aa31LG1G27820 Aethionema arabicum HOM05D004730 ORTHO05D005705 7.6e-128 461.1 338 70.7
CAN.G239.1 Capsicum annuum HOM05D004730 ORTHO05D005705 7.6e-128 461.1 345 71.3
Lsat_1_v5_gn_3_139961 Lactuca sativa HOM05D004730 ORTHO05D005705 7.6e-128 461.1 345 72.2
Glyma.04G141000 Glycine max HOM05D004730 ORTHO05D005705 1.3e-127 460.3 337 72.7
SGA_v2.0_scaffold5G03013 Striga asiatica HOM05D004730 ORTHO05D005705 1.3e-127 460.3 347 70.3
C06p27700 Brassica napus HOM05D004730 ORTHO05D005705 1.1e-126 457.2 342 72.2
C06p27860 Brassica napus HOM05D004730 ORTHO05D005705 1.1e-126 457.2 342 72.2
BolC6t37941H Brassica oleracea HOM05D004730 ORTHO05D005705 1.1e-126 457.2 342 72.2
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 2.4e-126 456.1 342 72.2
EL10Ac1g00278 Beta vulgaris HOM05D004730 ORTHO05D005705 3.2e-126 455.7 344 70.3
AUR62023469 Chenopodium quinoa HOM05D004730 ORTHO05D005705 3.2e-126 455.7 344 70.6
SalBow3G2618 Salvia bowleyana HOM05D004730 ORTHO05D005705 3.2e-126 455.7 345 70.4
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 4.2e-126 455.3 342 72.2
Eucgr.D02369 Eucalyptus grandis HOM05D004730 ORTHO05D005705 5.4e-126 454.9 338 71.0
Rhsim07G0004700 Rhododendron simsii HOM05D004730 ORTHO05D005705 5.4e-126 454.9 344 70.9
Nitab4.5_0000258g0150 Nicotiana tabacum HOM05D004730 ORTHO05D005705 9.3e-126 454.1 344 70.3
Peaxi162Scf00403g00522 Petunia axillaris HOM05D004730 ORTHO05D005705 1.6e-125 453.4 345 71.3
CSS0011474 Camellia sinensis var. sinensis HOM05D004730 ORTHO05D005705 4.6e-125 451.8 340 70.3
Sed0022953 Sechium edule HOM05D004730 ORTHO05D005705 4.6e-125 451.8 337 70.9
Cc02_g39260 Coffea canephora HOM05D004730 ORTHO05D005705 7.9e-125 451.1 345 71.0
Sc23g0002110 Simmondsia chinensis HOM05D004730 ORTHO05D005705 1.0e-124 450.7 344 69.5
MBI06_g08459_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 3.0e-124 449.1 342 69.3
ECA248G0182 Erigeron canadensis HOM05D004730 ORTHO05D005705 3.9e-124 448.7 344 72.1
Migut.B01859 Erythranthe guttata HOM05D004730 ORTHO05D005705 3.9e-124 448.7 345 69.0
Solyc05g050390.4 Solanum lycopersicum HOM05D004730 ORTHO05D005705 3.9e-124 448.7 346 70.5
Sopen05g028800 Solanum pennellii HOM05D004730 ORTHO05D005705 8.7e-124 447.6 346 70.2
vmacro13156 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 8.7e-124 447.6 344 70.1
arahy.Tifrunner.gnm1.ann1.EBD5YY Arachis hypogaea HOM05D004730 ORTHO05D005705 1.9e-123 446.4 351 69.5
PGSC0003DMG400017986 Solanum tuberosum HOM05D004730 ORTHO05D005705 1.9e-123 446.4 345 69.3
Lj7C501G3 Lonicera japonica HOM05D004730 ORTHO05D005705 2.5e-123 446.0 350 70.9
Oeu015369.3 Olea europaea HOM05D004730 ORTHO05D005705 2.5e-123 446.0 345 69.6
Ah.05g179630 Amaranthus hybridus HOM05D004730 ORTHO05D005705 1.3e-122 443.7 344 68.9
Aqoxy2G00449 Aquilegia oxysepala HOM05D004730 ORTHO05D005705 4.8e-122 441.8 344 68.9
PSO339G2575 Papaver somniferum HOM05D004730 ORTHO05D005705 2.4e-121 439.5 345 69.6
AUR62004484 Chenopodium quinoa HOM05D004730 ORTHO05D005705 9.0e-121 437.6 344 68.6
FAN10G3709 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.2e-119 433.0 337 70.0
HanXRQChr11g0353001 Helianthus annuus HOM05D004730 ORTHO05D005705 1.2e-117 427.2 339 70.5
BcaC08g45152 Brassica carinata HOM05D004730 ORTHO05D005705 1.6e-117 426.8 342 68.1
Nitab4.5_0004506g0070 Nicotiana tabacum HOM05D004730 ORTHO05D005705 1.6e-117 426.8 344 67.4
PSO210G5634 Papaver somniferum HOM05D004730 ORTHO05D005705 3.9e-116 422.2 345 67.5
Sc01g0002740 Simmondsia chinensis HOM05D004730 ORTHO05D005705 1.9e-115 419.9 344 65.4
BolC6t37951H Brassica oleracea HOM05D004730 ORTHO05D005705 5.3e-113 411.8 329 69.0
vmacro12679 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 3.4e-112 409.1 344 65.1
unitig_62.g23797 Utricularia gibba HOM05D004730 ORTHO05D005705 2.3e-108 396.4 335 64.8
ATR0213G028 Amborella trichopoda HOM05D004730 ORTHO05D005705 6.7e-108 394.8 374 59.4
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 1.4e-100 370.5 308 67.9
TWI23G0180 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 3.0e-100 369.4 330 62.1
Rhsim01G0172100 Rhododendron simsii HOM05D004730 ORTHO05D005705 3.3e-99 365.9 309 65.0
SHI13286 Sapria himalayana HOM05D004730 ORTHO05D005705 4.8e-98 362.1 336 61.6
Os03g0644000 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 6.9e-97 358.2 346 58.4
SEGI_06994 Sequoiadendron giganteum HOM05D004730 ORTHO05D005705 1.2e-96 357.5 376 53.2
Os01g0681400 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 4.5e-96 355.5 340 58.8
TWI59G0293 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 1.0e-95 354.4 340 58.8
Zm00001eb142950 Zea mays HOM05D004730 ORTHO05D005705 5.0e-95 352.1 347 58.5
Os03g0258500 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 3.0e-92 342.8 338 56.2
CDE05G0988 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 3.3e-91 339.3 344 56.4
HPP92_011453 Vanilla planifolia HOM05D004730 ORTHO05D005705 8.2e-90 334.7 309 62.1
Zm00001eb364100 Zea mays HOM05D004730 ORTHO05D005705 1.5e-88 330.5 336 54.8
Pp3c1_21510 Physcomitrium patens HOM05D004730 ORTHO05D005705 2.6e-88 329.7 352 51.7
PGR031G3051 Punica granatum HOM05D004730 ORTHO05D005705 3.6e-85 319.3 353 53.8
Pp3c10_4130 Physcomitrium patens HOM05D004730 ORTHO05D005705 1.4e-84 317.4 353 51.6
Ca_26857_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 2.6e-83 313.2 301 59.8
Oeu019761.1 Olea europaea HOM05D004730 ORTHO05D005705 4.1e-81 305.8 211 75.8
Mapoly0091s0016 Marchantia polymorpha HOM05D004730 ORTHO05D005705 3.2e-78 296.2 375 47.2
SMO114G0122 Selaginella moellendorffii HOM05D004730 ORTHO05D005705 2.7e-77 293.1 345 49.0
MBI01_g41444_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 2.7e-72 276.6 298 55.7
AagrBONN_evm.TU.Sc2ySwM_344.2008 Anthoceros agrestis HOM05D004730 ORTHO05D005705 1.7e-71 273.9 353 45.0
MBI01_g34153_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 2.6e-67 260.0 301 52.8
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 9.8e-67 258.1 206 69.9
Actinidia20237 Actinidia chinensis HOM05D004730 ORTHO05D005705 3.5e-64 249.6 245 57.6
CANSAT56G2405 Cannabis sativa HOM05D004730 ORTHO05D005705 2.3e-63 246.9 163 77.9
CBR_g66692 Chara braunii HOM05D004730 ORTHO05D005705 1.3e-58 231.1 290 45.2
TAR374G1455 Trochodendron aralioides HOM05D004730 ORTHO05D005705 6.8e-44 182.2 138 67.4
Cre01.g020264 Chlamydomonas reinhardtii HOM05D004730 ORTHO05D005705 7.6e-35 152.1 302 33.4
MCO03G136 Micromonas commoda HOM05D004730 ORTHO05D005705 1.1e-30 138.3 215 37.2
Ca_26856_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 6.2e-29 132.5 117 64.1
PRCOL_00007095 Prasinoderma coloniale HOM05D004730 ORTHO05D005705 4.0e-28 129.8 228 37.3
ATR0213G026 Amborella trichopoda HOM05D004730 ORTHO05D005705 6.4e-18 95.9 155 42.6
Cfa022403 Carpinus fangiana HOM05D004730 ORTHO05D005705 8.4e-18 95.5 230 31.7
CARHR263800 Cardamine hirsuta HOM05D004730 ORTHO05D005705 1.7e-15 87.8 118 44.9
MBI10_g27627_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D017720 3.9e-15 86.7 65 66.2
arahy.Tifrunner.gnm1.ann1.LSW4XK Arachis hypogaea HOM05D000092 ORTHO05D000042 2.1e-13 80.9 72 56.9
CDE08G1494 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 1.4e-12 78.2 216 31.9
CDE08G0541 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 1.5e-11 74.7 86 52.3
CARHR263810 Cardamine hirsuta HOM05D004730 ORTHO05D005705 5.6e-06 56.2 115 39.1


User provided reference genes

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