Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc96.50 Carica papaya HOM05D006558 ORTHO05D008424 5.3e-284 980.3 489 100.0
QL04p014186 Quercus lobata HOM05D006558 ORTHO05D008424 2.6e-174 615.9 448 66.5
CiPaw.13G011700 Carya illinoinensis HOM05D006558 ORTHO05D008424 1.4e-170 603.6 443 67.0
Duzib106G1800 Durio zibethinus HOM05D006558 ORTHO05D008424 1.5e-169 600.1 446 66.1
Gohir.D06G185500 Gossypium hirsutum HOM05D006558 ORTHO05D008424 5.7e-169 598.2 447 66.4
Gorai.010G217100 Gossypium raimondii HOM05D006558 ORTHO05D008424 9.7e-169 597.4 447 66.7
TAR633G1807 Trochodendron aralioides HOM05D006558 ORTHO05D008424 1.3e-168 597.0 454 64.5
Thecc.10G170400 Theobroma cacao HOM05D006558 ORTHO05D008424 1.7e-168 596.7 447 65.5
Manes.12G022900 Manihot esculenta HOM05D006558 ORTHO05D008424 3.7e-168 595.5 470 61.3
GSVIVG01000827001 Vitis vinifera HOM05D006558 ORTHO05D008424 5.9e-166 588.2 447 65.5
TWI15G0624 Tripterygium wilfordii HOM05D006558 ORTHO05D008424 2.9e-165 585.9 471 61.6
Ciclev10033512m.g Citrus clementina HOM05D006558 ORTHO05D008424 5.0e-165 585.1 470 61.9
Atru.chr11.2434 Acer truncatum HOM05D006558 ORTHO05D008424 4.2e-164 582.0 446 63.5
Prupe.2G031500 Prunus persica HOM05D006558 ORTHO05D008424 3.6e-163 578.9 474 61.0
FAN01G2130 Fragaria x ananassa HOM05D006558 ORTHO05D008424 2.6e-161 572.8 450 62.7
RcHm_v2.0_Chr1g0321321 Rosa chinensis HOM05D006558 ORTHO05D008424 3.7e-160 568.9 450 63.1
FvH4_7g02620 Fragaria vesca HOM05D006558 ORTHO05D008424 1.8e-159 566.6 450 62.0
FAN03G0498 Fragaria x ananassa HOM05D006558 ORTHO05D008424 7.0e-159 564.7 450 61.6
Actinidia06260 Actinidia chinensis HOM05D006558 ORTHO05D008424 1.7e-157 560.1 446 61.9
Thhalv10020176m.g Eutrema salsugineum HOM05D006558 ORTHO05D008424 9.4e-156 554.3 470 57.7
Nn7g37154 Nelumbo nucifera HOM05D006558 ORTHO05D008424 2.1e-155 553.1 464 59.3
Rhsim07G0065000 Rhododendron simsii HOM05D006558 ORTHO05D008424 2.0e-153 546.6 483 58.0
AL3G18860 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 1.3e-152 543.9 470 57.4
Lalb_Chr25g0282291 Lupinus albus HOM05D006558 ORTHO05D008424 1.7e-152 543.5 470 55.5
Potri.004G236000 Populus trichocarpa HOM05D006558 ORTHO05D008424 2.2e-152 543.1 446 61.9
THA.LOC104826716 Tarenaya hassleriana HOM05D006558 ORTHO05D008424 1.4e-151 540.4 471 58.4
AT3G07530 Arabidopsis thaliana HOM05D006558 ORTHO05D008424 1.2e-150 537.3 470 56.0
Carub.0003s0708 Capsella rubella HOM05D006558 ORTHO05D008424 2.0e-150 536.6 470 56.2
Sabra01G0180400 Salix brachista HOM05D006558 ORTHO05D008424 7.7e-150 534.6 446 61.2
Sp3g06440 Schrenkiella parvula HOM05D006558 ORTHO05D008424 2.2e-149 533.1 470 56.4
CANSAT78G0292 Cannabis sativa HOM05D006558 ORTHO05D008424 2.5e-148 529.6 447 60.2
CARHR082190 Cardamine hirsuta HOM05D006558 ORTHO05D008424 3.2e-148 529.3 472 55.9
Lj3g0026268 Lotus japonicus HOM05D006558 ORTHO05D008424 2.1e-147 526.6 470 55.3
DCAR_010372 Daucus carota HOM05D006558 ORTHO05D008424 4.7e-147 525.4 446 58.1
Glyma.11G153500 Glycine max HOM05D006558 ORTHO05D008424 4.0e-146 522.3 446 58.1
CANSAT78G2064 Cannabis sativa HOM05D006558 ORTHO05D008424 5.2e-146 521.9 446 59.9
Ca_25408_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 1.2e-145 520.8 446 57.2
Psat5g217480 Pisum sativum HOM05D006558 ORTHO05D008424 1.2e-145 520.8 446 57.4
BcaC05g29545 Brassica carinata HOM05D006558 ORTHO05D008424 3.4e-145 519.2 470 55.5
AUR62037214 Chenopodium quinoa HOM05D006558 ORTHO05D008424 5.7e-145 518.5 446 57.8
Cc07_g20890 Coffea canephora HOM05D006558 ORTHO05D008424 1.3e-144 517.3 478 54.0
Psat5g217880 Pisum sativum HOM05D006558 ORTHO05D008424 2.8e-144 516.2 446 56.7
AUR62026839 Chenopodium quinoa HOM05D006558 ORTHO05D008424 6.3e-144 515.0 446 57.8
ECA248G1764 Erigeron canadensis HOM05D006558 ORTHO05D008424 8.3e-144 514.6 447 57.0
HanXRQChr02g0050141 Helianthus annuus HOM05D006558 ORTHO05D008424 1.4e-143 513.8 447 56.6
Aqoxy2G03825 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 1.8e-143 513.5 463 56.2
BolC5t34633H Brassica oleracea HOM05D006558 ORTHO05D008424 2.4e-143 513.1 445 57.3
CsaV3_5G011280 Cucumis sativus L. HOM05D006558 ORTHO05D008424 7.0e-143 511.5 447 58.8
Phvul.002G285400 Phaseolus vulgaris HOM05D006558 ORTHO05D008424 2.0e-142 510.0 448 57.6
BraA05t22799Z Brassica rapa HOM05D006558 ORTHO05D008424 5.9e-142 508.4 445 56.4
Sc11g0006630 Simmondsia chinensis HOM05D006558 ORTHO05D008424 1.3e-141 507.3 445 56.6
Aa31LG10G8390 Aethionema arabicum HOM05D006558 ORTHO05D008424 2.9e-141 506.1 471 53.7
Aqoxy5G01848 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 5.0e-141 505.4 465 55.7
TPR.G9868 Trifolium pratense HOM05D006558 ORTHO05D008424 6.5e-141 505.0 465 53.1
SHI03978 Sapria himalayana HOM05D006558 ORTHO05D005892 8.5e-141 504.6 444 56.3
VMungo0251G1905 Vigna mungo HOM05D006558 ORTHO05D008424 3.2e-140 502.7 448 58.7
MELO3C016629.2 Cucumis melo HOM05D006558 ORTHO05D008424 7.2e-140 501.5 446 57.4
MBI13_g29518_MAGBIO Magnolia biondii HOM05D006558 ORTHO05D008424 2.7e-139 499.6 453 55.4
SGA_v2.0_scaffold232G43518 Striga asiatica HOM05D006558 ORTHO05D008424 8.0e-139 498.0 452 55.1
Sopen03g028230 Solanum pennellii HOM05D006558 ORTHO05D008424 1.8e-138 496.9 446 56.1
Solyc03g097460.3 Solanum lycopersicum HOM05D006558 ORTHO05D008424 4.0e-138 495.7 446 56.1
Oeu006113.1 Olea europaea HOM05D006558 ORTHO05D008424 5.2e-138 495.4 443 55.5
EL10Ac2g02834 Beta vulgaris HOM05D006558 ORTHO05D009340 8.8e-138 494.6 443 56.4
PGR031G1286 Punica granatum HOM05D006558 ORTHO05D008424 1.2e-137 494.2 451 53.2
A05p40680 Brassica napus HOM05D006558 ORTHO05D008424 1.5e-137 493.8 428 58.4
C05p59790 Brassica napus HOM05D006558 ORTHO05D008424 1.5e-137 493.8 452 55.8
Peaxi162Scf00516g00328 Petunia axillaris HOM05D006558 ORTHO05D008424 4.4e-137 492.3 442 55.0
Lsat_1_v5_gn_1_114420 Lactuca sativa HOM05D006558 ORTHO05D008424 4.9e-136 488.8 467 53.7
Lj9C648T3 Lonicera japonica HOM05D006558 ORTHO05D008424 7.0e-135 485.0 415 58.8
Sed0005595 Sechium edule HOM05D006558 ORTHO05D008424 5.9e-134 481.9 446 54.9
Dinv00935 Davidia involucrata HOM05D006558 ORTHO05D008424 5.6e-132 475.3 332 71.4
Nitab4.5_0000021g1060 Nicotiana tabacum HOM05D006558 ORTHO05D008424 1.5e-129 467.2 454 52.6
Ah.10g030940 Amaranthus hybridus HOM05D006558 ORTHO05D008424 2.6e-129 466.5 473 50.1
CAN.G732.14 Capsicum annuum HOM05D006558 ORTHO05D008424 4.4e-129 465.7 445 53.0
Nitab4.5_0002530g0080 Nicotiana tabacum HOM05D006558 ORTHO05D008424 1.7e-128 463.8 446 53.1
HPP92_012099 Vanilla planifolia HOM05D006558 ORTHO05D008424 4.1e-127 459.1 479 49.7
Ca_25460_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 5.4e-127 458.8 406 56.4
arahy.Tifrunner.gnm1.ann1.898F3G Arachis hypogaea HOM05D006558 ORTHO05D008424 9.5e-124 448.0 417 54.0
Haze_03062 Corylus avellana HOM05D006558 ORTHO05D008424 6.2e-123 445.3 360 61.7
PSO675G8563 Papaver somniferum HOM05D006558 ORTHO05D008424 1.2e-113 414.5 451 48.3
MD00G1214500 Malus domestica HOM05D006558 ORTHO05D008424 1.2e-107 394.4 319 61.4
Migut.K00935 Erythranthe guttata HOM05D006558 ORTHO05D008424 8.4e-104 381.7 411 51.1
Gohir.A06G175902 Gossypium hirsutum HOM05D006558 ORTHO05D008424 5.3e-90 335.9 235 67.2
unitig_32.g11142 Utricularia gibba HOM05D006558 ORTHO05D008424 2.7e-86 323.6 452 41.8
Dinv09252 Davidia involucrata HOM05D006558 ORTHO05D008424 7.9e-86 322.0 281 61.6
arahy.Tifrunner.gnm1.ann1.S73JQ5 Arachis hypogaea HOM05D006558 ORTHO05D008424 1.4e-82 311.2 295 51.9
vmacro13739 Vaccinium macrocarpon HOM05D006558 ORTHO05D008424 8.7e-77 292.0 245 59.6
Hund15718 Selenicereus undatus HOM05D006558 ORTHO05D008424 7.4e-76 288.9 268 56.7
Atru.chr11.2476 Acer truncatum HOM05D006558 ORTHO05D008424 3.4e-73 280.0 186 69.9
MD07G1035100 Malus domestica HOM05D006558 ORTHO05D008424 3.8e-72 276.6 207 64.3
ATR1093G023 Amborella trichopoda HOM05D006558 ORTHO05D008424 2.5e-68 263.8 252 52.0
Mapoly0001s0524 Marchantia polymorpha HOM05D006558 ORTHO05D008424 5.7e-68 262.7 568 33.3
AagrBONN_evm.TU.Sc2ySwM_228.965 Anthoceros agrestis HOM05D006558 ORTHO05D008424 2.9e-64 250.4 507 31.8
CDE05G1491 Ceratophyllum demersum HOM05D006558 ORTHO05D008424 3.8e-64 250.0 325 43.7
Medtr3g019010 Medicago truncatula HOM05D006558 ORTHO05D008424 6.5e-64 249.2 239 54.0
SMO229G0006 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 1.9e-60 237.7 461 30.4
SMO144G0043 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 5.7e-60 236.1 461 30.4
Zm00001eb143980 Zea mays HOM05D006558 ORTHO05D008424 2.8e-59 233.8 264 47.0
PGSC0003DMG400031735 Solanum tuberosum HOM05D006558 ORTHO05D008424 1.4e-58 231.5 238 51.7
Pp3c9_4730 Physcomitrium patens HOM05D006558 ORTHO05D008424 1.0e-56 225.3 577 30.3
Gohir.A06G175900 Gossypium hirsutum HOM05D006558 ORTHO05D008424 2.3e-53 214.2 178 64.6
Eucgr.H05132 Eucalyptus grandis HOM05D006558 ORTHO05D008424 8.2e-51 205.7 429 33.6
SEGI_00327 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 3.9e-45 186.8 160 51.9
COL.COLO4_35437 Corchorus olitorius HOM05D006558 ORTHO05D008424 1.3e-43 181.8 330 34.5
Eucgr.H05129 Eucalyptus grandis HOM05D006558 ORTHO05D008424 1.0e-40 172.2 146 55.5
AL908U10010 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 1.2e-38 165.2 145 59.3
MD00G1214400 Malus domestica HOM05D006558 ORTHO05D008424 4.4e-28 130.2 109 57.8
Medtr3g019025 Medicago truncatula HOM05D006558 ORTHO05D008424 4.4e-28 130.2 89 66.3
Os03g0243200 Oryza sativa ssp. japonica HOM05D006558 ORTHO05D008424 9.8e-28 129.0 191 38.2
SEGI_06522 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 2.4e-26 124.4 139 48.9
SEGI_36037 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 9.1e-26 122.5 255 31.8
CBR_g72661 Chara braunii HOM05D000019 ORTHO05D000353 7.5e-20 102.8 272 29.8
Ca_02010_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 8.0e-14 82.8 59 64.4
CAN.G261.15 Capsicum annuum HOM05D003152 ORTHO05D034019 1.0e-13 82.4 58 60.3
Medtr3g019030 Medicago truncatula HOM05D006558 ORTHO05D034019 5.7e-12 76.6 43 74.4
Cc02_g29630 Coffea canephora HOM05D006558 ORTHO05D008424 7.5e-12 76.3 85 43.5
Eucgr.H05138 Eucalyptus grandis HOM05D006558 ORTHO05D008424 1.8e-10 71.6 67 59.7
MBI08_g18916_MAGBIO Magnolia biondii HOM05D000017 ORTHO05D000013 1.5e-07 62.0 175 30.9
Rhsim12G0031700 Rhododendron simsii HOM05D000017 ORTHO05D000013 2.5e-07 61.2 70 50.0
Nn7g37167 Nelumbo nucifera HOM05D006558 ORTHO05D008424 2.8e-06 57.8 48 64.6
Sed0009742 Sechium edule HOM05D002159 ORTHO05D005625 3.6e-06 57.4 358 22.1
Sopen05g017900 Solanum pennellii HOM05D028470 ORTHO05D037706 3.6e-06 57.4 72 41.7
Zm00001eb162800 Zea mays HOM05D002159 ORTHO05D005625 6.2e-06 56.6 335 23.3


User provided reference genes

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