Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc96.39 Carica papaya HOM05D000372 ORTHO05D002769 1.1e-190 669.8 359 100.0
Ciclev10023268m.g Citrus clementina HOM05D000372 ORTHO05D002769 2.0e-70 270.4 358 44.7
Manes.09G059183 Manihot esculenta HOM05D000372 ORTHO05D002769 1.7e-69 267.3 356 43.0
Manes.09G059305 Manihot esculenta HOM05D000372 ORTHO05D002769 2.2e-69 266.9 356 43.3
GSVIVG01028113001 Vitis vinifera HOM05D000372 ORTHO05D002769 4.6e-67 259.2 354 41.8
QL02p088793 Quercus lobata HOM05D000372 ORTHO05D002769 6.0e-67 258.8 356 42.4
Potri.014G121500 Populus trichocarpa HOM05D000372 ORTHO05D002769 7.8e-67 258.5 356 39.6
Thecc.01G312600 Theobroma cacao HOM05D000372 ORTHO05D002769 1.7e-66 257.3 351 41.6
TAR375G0751 Trochodendron aralioides HOM05D000372 ORTHO05D002769 1.1e-65 254.6 358 41.9
Potri.008G191100 Populus trichocarpa HOM05D000372 ORTHO05D002769 4.3e-65 252.7 356 39.3
TAR365G1263 Trochodendron aralioides HOM05D000372 ORTHO05D002769 4.3e-65 252.7 353 41.9
Duzib138G0051 Durio zibethinus HOM05D000372 ORTHO05D002769 2.1e-64 250.4 357 39.8
Migut.D00626 Erythranthe guttata HOM05D000372 ORTHO05D002769 2.8e-64 250.0 357 39.8
Migut.L00821 Erythranthe guttata HOM05D000372 ORTHO05D002769 8.1e-64 248.4 357 39.5
Haze_05034 Corylus avellana HOM05D000372 ORTHO05D002769 1.1e-63 248.1 339 42.5
Sabra14G0090100 Salix brachista HOM05D000372 ORTHO05D002769 1.4e-63 247.7 354 39.8
Migut.L00245 Erythranthe guttata HOM05D000372 ORTHO05D002769 4.0e-63 246.1 352 39.8
Actinidia21405 Actinidia chinensis HOM05D000372 ORTHO05D002769 1.2e-62 244.6 350 40.3
Atru.chr5.1009 Acer truncatum HOM05D000372 ORTHO05D002769 3.4e-62 243.0 358 41.6
Cc02_g27630 Coffea canephora HOM05D000372 ORTHO05D002769 5.8e-62 242.3 353 39.1
Atru.chr5.1012 Acer truncatum HOM05D000372 ORTHO05D002769 7.6e-62 241.9 354 42.9
Cfa005806 Carpinus fangiana HOM05D000372 ORTHO05D002769 1.3e-61 241.1 318 44.0
QL07p024505 Quercus lobata HOM05D000372 ORTHO05D002769 3.5e-59 233.0 353 40.2
Sed0019709 Sechium edule HOM05D000372 ORTHO05D002769 5.6e-57 225.7 359 37.0
TWI14G0109 Tripterygium wilfordii HOM05D000372 ORTHO05D002769 7.3e-57 225.3 360 38.3
Gohir.A12G125250 Gossypium hirsutum HOM05D000372 ORTHO05D002769 4.8e-56 222.6 354 37.0
CiPaw.08G090100 Carya illinoinensis HOM05D000372 ORTHO05D002769 1.1e-55 221.5 356 38.8
Gohir.D12G128900 Gossypium hirsutum HOM05D000372 ORTHO05D002769 1.1e-55 221.5 354 37.0
Gorai.008G139900 Gossypium raimondii HOM05D000372 ORTHO05D002769 1.8e-55 220.7 354 37.0
Gohir.A12G125200 Gossypium hirsutum HOM05D000372 ORTHO05D002769 6.9e-55 218.8 354 36.4
Dinv24429 Davidia involucrata HOM05D000372 ORTHO05D002769 5.8e-54 215.7 354 38.7
Nn3g20181 Nelumbo nucifera HOM05D000372 ORTHO05D002769 1.7e-53 214.2 355 37.7
SalBow6G5268 Salvia bowleyana HOM05D000372 ORTHO05D002769 4.9e-53 212.6 358 36.6
SalBow7G4121 Salvia bowleyana HOM05D000372 ORTHO05D002769 1.9e-52 210.7 357 36.4
SalBow7G1647 Salvia bowleyana HOM05D000372 ORTHO05D002769 1.2e-51 208.0 357 36.1
Glyma.03G219100 Glycine max HOM05D000372 ORTHO05D002769 1.6e-51 207.6 342 40.1
Potri.013G009700 Populus trichocarpa HOM05D000372 ORTHO05D002769 4.6e-51 206.1 315 40.6
Dinv10089 Davidia involucrata HOM05D000372 ORTHO05D002769 8.7e-50 201.8 275 42.5
Hma1.2p1_0486F.1_g163220 Hydrangea macrophylla HOM05D000372 ORTHO05D002769 8.7e-50 201.8 274 39.8
DCAR_001087 Daucus carota HOM05D000372 ORTHO05D002769 3.3e-49 199.9 335 35.8
SGA_v2.0_scaffold29G12316 Striga asiatica HOM05D000372 ORTHO05D002769 3.3e-49 199.9 361 36.3
Haze_04074 Corylus avellana HOM05D000372 ORTHO05D002769 5.6e-49 199.1 332 35.5
Thecc.05G321700 Theobroma cacao HOM05D000372 ORTHO05D002769 2.1e-48 197.2 313 39.0
ClCG02G014910 Citrullus lanatus HOM05D000372 ORTHO05D002769 3.7e-48 196.4 304 37.8
EL10As5g23524 Beta vulgaris HOM05D000372 ORTHO05D002769 4.8e-48 196.1 354 35.6
PGR119G2264 Punica granatum HOM05D000372 ORTHO05D002769 4.8e-48 196.1 360 35.6
Sabra13G0008200 Salix brachista HOM05D000372 ORTHO05D002769 6.2e-48 195.7 315 39.4
Rhsim13G0005100 Rhododendron simsii HOM05D000372 ORTHO05D002769 1.4e-47 194.5 276 42.4
QL03p018596 Quercus lobata HOM05D000372 ORTHO05D002769 9.0e-47 191.8 319 37.0
LjContig00564g0027133 Lotus japonicus HOM05D000372 ORTHO05D002769 4.5e-46 189.5 356 37.1
vmacro02407 Vaccinium macrocarpon HOM05D000372 ORTHO05D002769 1.0e-45 188.3 275 40.4
MD04G1194300 Malus domestica HOM05D000372 ORTHO05D002769 2.9e-45 186.8 369 35.2
Phvul.007G215000 Phaseolus vulgaris HOM05D000372 ORTHO05D002769 1.1e-44 184.9 318 36.8
Migut.L00234 Erythranthe guttata HOM05D000372 ORTHO05D002769 1.4e-44 184.5 358 33.2
Lsat_1_v5_gn_3_140881 Lactuca sativa HOM05D000372 ORTHO05D002769 4.2e-44 183.0 359 34.5
AUR62024660 Chenopodium quinoa HOM05D000372 ORTHO05D002769 7.1e-44 182.2 363 34.7
Migut.K01499 Erythranthe guttata HOM05D000372 ORTHO05D002769 2.1e-43 180.6 358 32.7
Medtr1g090850 Medicago truncatula HOM05D000372 ORTHO05D002769 2.1e-43 180.6 359 34.3
Lj5g0015592 Lotus japonicus HOM05D000372 ORTHO05D002769 2.7e-43 180.3 346 33.8
TPR.G19773 Trifolium pratense HOM05D000372 ORTHO05D002769 4.6e-43 179.5 354 33.6
Medtr1g087140 Medicago truncatula HOM05D000372 ORTHO05D002769 1.0e-42 178.3 323 34.1
Migut.K01504 Erythranthe guttata HOM05D000372 ORTHO05D002769 3.0e-42 176.8 353 33.4
Aqoxy2G01548 Aquilegia oxysepala HOM05D000372 ORTHO05D002769 6.7e-42 175.6 360 33.3
Ah.11g049270 Amaranthus hybridus HOM05D000372 ORTHO05D002769 1.1e-41 174.9 340 35.9
CARHR142820 Cardamine hirsuta HOM05D000372 ORTHO05D002769 5.7e-41 172.6 360 35.6
Migut.K01502 Erythranthe guttata HOM05D000372 ORTHO05D002769 5.7e-41 172.6 357 32.5
TPR.G37768 Trifolium pratense HOM05D000372 ORTHO05D002769 7.4e-41 172.2 363 33.3
CANSAT78G1040 Cannabis sativa HOM05D000372 ORTHO05D002769 2.8e-40 170.2 377 31.3
Lj1C17G12 Lonicera japonica HOM05D000372 ORTHO05D002769 1.8e-39 167.5 277 36.5
Atru.chr2.155 Acer truncatum HOM05D000372 ORTHO05D002769 2.4e-39 167.2 320 35.9
Lsat_1_v5_gn_1_115241 Lactuca sativa HOM05D000372 ORTHO05D002769 6.9e-39 165.6 349 34.7
THA.LOC104809100 Tarenaya hassleriana HOM05D000372 ORTHO05D002769 3.4e-38 163.3 357 34.5
CANSAT25G0353 Cannabis sativa HOM05D000372 ORTHO05D002769 1.0e-37 161.8 376 32.7
Sc05g0000440 Simmondsia chinensis HOM05D000372 ORTHO05D002769 1.3e-37 161.4 340 33.8
CSS0041824 Camellia sinensis var. sinensis HOM05D000372 ORTHO05D002769 2.2e-37 160.6 279 38.7
Aa31LG1G28730 Aethionema arabicum HOM05D000372 ORTHO05D002769 1.1e-36 158.3 364 33.2
Hund02938 Selenicereus undatus HOM05D000372 ORTHO05D002769 1.1e-36 158.3 281 38.4
Sp4g29380 Schrenkiella parvula HOM05D000372 ORTHO05D002769 1.9e-36 157.5 359 34.3
THA.LOC104817460 Tarenaya hassleriana HOM05D000372 ORTHO05D002769 1.9e-36 157.5 348 34.8
AL4G46990 Arabidopsis lyrata HOM05D000372 ORTHO05D002769 3.2e-36 156.8 359 33.1
BcaB02g08632 Brassica carinata HOM05D000372 ORTHO05D002769 3.2e-36 156.8 337 33.2
Thhalv10001751m.g Eutrema salsugineum HOM05D000372 ORTHO05D002769 7.1e-36 155.6 342 35.7
Prupe.6G314200 Prunus persica HOM05D000372 ORTHO05D002769 7.1e-36 155.6 337 34.1
CiPaw.07G028700 Carya illinoinensis HOM05D000372 ORTHO05D002769 1.2e-35 154.8 316 35.4
DCAR_003315 Daucus carota HOM05D000372 ORTHO05D002769 1.6e-35 154.5 348 31.3
CAN.G1715.11 Capsicum annuum HOM05D000372 ORTHO05D002769 3.5e-35 153.3 342 32.7
MBI19_g17403_MAGBIO Magnolia biondii HOM05D000372 ORTHO05D002769 4.6e-35 152.9 305 34.4
Dinv30878 Davidia involucrata HOM05D000372 ORTHO05D002769 1.0e-34 151.8 248 37.9
Nitab4.5_0008173g0010 Nicotiana tabacum HOM05D000372 ORTHO05D002769 2.3e-34 150.6 345 31.6
Thhalv10027011m.g Eutrema salsugineum HOM05D000372 ORTHO05D002769 3.9e-34 149.8 336 32.4
Lsat_1_v5_gn_9_2821 Lactuca sativa HOM05D000372 ORTHO05D002769 8.7e-34 148.7 322 34.2
A04p08030 Brassica napus HOM05D000372 ORTHO05D002769 1.1e-33 148.3 335 31.6
PSO761G0296 Papaver somniferum HOM05D000372 ORTHO05D002769 1.1e-33 148.3 353 30.9
Oeu046610.1 Olea europaea HOM05D000372 ORTHO05D002769 1.5e-33 147.9 234 35.9
BcaC02g09357 Brassica carinata HOM05D000372 ORTHO05D002769 2.5e-33 147.1 335 31.0
BraA04t16491Z Brassica rapa HOM05D000372 ORTHO05D002769 7.4e-33 145.6 340 31.5
MELO3C004183.2 Cucumis melo HOM05D000372 ORTHO05D002769 7.4e-33 145.6 250 35.2
vmacro19735 Vaccinium macrocarpon HOM05D000372 ORTHO05D002769 7.4e-33 145.6 272 36.4
BcaC02g12578 Brassica carinata HOM05D000372 ORTHO05D002769 9.7e-33 145.2 338 31.4
C04p00440 Brassica napus HOM05D000372 ORTHO05D002769 1.3e-32 144.8 357 31.4
Carub.0004s3015 Capsella rubella HOM05D000372 ORTHO05D002769 2.2e-32 144.1 336 31.8
Nitab4.5_0000368g0190 Nicotiana tabacum HOM05D000372 ORTHO05D002769 2.2e-32 144.1 340 31.5
BraA05t19047Z Brassica rapa HOM05D000372 ORTHO05D002769 2.8e-32 143.7 358 32.4
CsaV3_2G007100 Cucumis sativus L. HOM05D000372 ORTHO05D002769 2.8e-32 143.7 250 34.4
BcaB02g08772 Brassica carinata HOM05D000372 ORTHO05D002769 3.7e-32 143.3 322 33.5
AT2G47430 Arabidopsis thaliana HOM05D000372 ORTHO05D002769 6.3e-32 142.5 359 32.3
Cc02_g34910 Coffea canephora HOM05D000372 ORTHO05D002769 1.1e-31 141.7 339 31.9
PSO210G1507 Papaver somniferum HOM05D000372 ORTHO05D002769 1.4e-31 141.4 323 32.2
Eucgr.H00069 Eucalyptus grandis HOM05D000372 ORTHO05D002769 5.3e-31 139.4 313 31.9
BcaC02g12790 Brassica carinata HOM05D000372 ORTHO05D002769 1.5e-30 137.9 223 38.6
C04p41710 Brassica napus HOM05D000372 ORTHO05D002769 1.5e-30 137.9 335 30.4
ECA238G2885 Erigeron canadensis HOM05D000372 ORTHO05D002769 2.0e-30 137.5 232 37.1
Psat6g161920 Pisum sativum HOM05D000372 ORTHO05D002769 2.0e-30 137.5 357 28.6
A05p00490 Brassica napus HOM05D000372 ORTHO05D002769 2.6e-30 137.1 339 32.4
SHI20309 Sapria himalayana HOM05D000372 ORTHO05D002769 3.4e-30 136.7 368 31.2
arahy.Tifrunner.gnm1.ann1.T4SC65 Arachis hypogaea HOM05D000372 ORTHO05D002769 1.0e-29 135.2 351 30.5
arahy.Tifrunner.gnm1.ann1.K541B7 Arachis hypogaea HOM05D000372 ORTHO05D002769 2.9e-29 133.7 352 30.4
RcHm_v2.0_Chr3g0456951 Rosa chinensis HOM05D000372 ORTHO05D002769 5.0e-29 132.9 323 30.7
Rhsim05G0132900 Rhododendron simsii HOM05D000372 ORTHO05D002769 1.4e-28 131.3 254 36.6
AL5G30070 Arabidopsis lyrata HOM05D000372 ORTHO05D002769 7.2e-28 129.0 274 32.1
AL6G40800 Arabidopsis lyrata HOM05D000372 ORTHO05D002769 1.2e-27 128.3 274 32.8
CSS0017952 Camellia sinensis var. sinensis HOM05D000372 ORTHO05D002769 2.1e-27 127.5 248 34.7
CSS0022018 Camellia sinensis var. sinensis HOM05D000372 ORTHO05D002769 2.1e-27 127.5 248 34.7
VMungo0720G1567 Vigna mungo HOM05D000372 ORTHO05D002769 7.9e-27 125.6 270 31.5
arahy.Tifrunner.gnm1.ann1.55QT47 Arachis hypogaea HOM05D000372 ORTHO05D002769 3.0e-26 123.6 279 31.2
PSO384G1568 Papaver somniferum HOM05D000372 ORTHO05D002769 6.7e-26 122.5 377 27.3
Sp7g11940 Schrenkiella parvula HOM05D000372 ORTHO05D002769 6.7e-26 122.5 331 29.3
arahy.Tifrunner.gnm1.ann1.X6QMRK Arachis hypogaea HOM05D000372 ORTHO05D002769 2.5e-25 120.6 278 30.9
DCAR_002898 Daucus carota HOM05D000372 ORTHO05D002769 2.5e-25 120.6 255 32.9
Duzib177G0355 Durio zibethinus HOM05D000372 ORTHO05D002769 4.3e-25 119.8 248 32.3
SEGI_23134 Sequoiadendron giganteum HOM05D000372 ORTHO05D002769 3.7e-24 116.7 252 32.9
SGA_v2.0_scaffold53G19298 Striga asiatica HOM05D000372 ORTHO05D002769 8.2e-24 115.5 329 28.6
PSO339G3065 Papaver somniferum HOM05D000372 ORTHO05D002769 2.4e-23 114.0 388 27.3
SEGI_05175 Sequoiadendron giganteum HOM05D000372 ORTHO05D002769 2.4e-23 114.0 368 27.4
MBI19_g07250_MAGBIO Magnolia biondii HOM05D000372 ORTHO05D002769 2.9e-21 107.1 280 29.3
Migut.K01490 Erythranthe guttata HOM05D000372 ORTHO05D002769 3.8e-21 106.7 352 27.0
Gohir.D11G282900 Gossypium hirsutum HOM05D000372 ORTHO05D002769 3.8e-21 106.7 221 31.7
Gorai.007G305700 Gossypium raimondii HOM05D000372 ORTHO05D002769 3.8e-21 106.7 221 31.7
CDE11G0630 Ceratophyllum demersum HOM05D000372 ORTHO05D002769 5.5e-20 102.8 313 26.5
Peaxi162Scf00673g00224 Petunia axillaris HOM05D000372 ORTHO05D002769 1.6e-19 101.3 168 38.7
Ca_10461_v3 Cicer arietinum L. HOM05D000372 ORTHO05D002769 1.0e-18 98.6 237 32.9
COL.COLO4_04147 Corchorus olitorius HOM05D000372 ORTHO05D002769 3.0e-18 97.1 210 32.4
Mapoly0075s0036 Marchantia polymorpha HOM05D000372 ORTHO05D002769 6.7e-18 95.9 385 26.8
Oeu048870.1 Olea europaea HOM05D000372 ORTHO05D002769 7.0e-15 85.9 229 28.8
ECA247G1051 Erigeron canadensis HOM05D000372 ORTHO05D002769 1.2e-14 85.1 280 26.8
TAR375G0924 Trochodendron aralioides HOM05D000372 ORTHO05D002769 2.2e-13 80.9 356 26.4
Oeu014944.1 Olea europaea HOM05D000372 ORTHO05D002769 1.6e-11 74.7 103 38.8
DCAR_003275 Daucus carota HOM05D000372 ORTHO05D002769 5.7e-09 66.2 170 28.8
AUR62031616 Chenopodium quinoa HOM05D000372 ORTHO05D002769 1.3e-08 65.1 182 29.1
AUR62031642 Chenopodium quinoa HOM05D000372 ORTHO05D002769 1.3e-08 65.1 182 29.1
QL12p020035 Quercus lobata HOM05D000372 ORTHO05D002769 8.2e-08 62.4 81 42.0
AUR62038873 Chenopodium quinoa HOM05D000372 ORTHO05D002769 5.3e-07 59.7 161 28.0
Lju926C11G5 Lonicera japonica HOM05D000372 ORTHO05D002769 1.2e-06 58.5 153 30.1
DCAR_023766 Daucus carota HOM05D000372 ORTHO05D002769 2.0e-06 57.8 141 28.4
AUR62010751 Chenopodium quinoa HOM05D000372 ORTHO05D002769 2.6e-06 57.4 161 27.3


User provided reference genes

Program Settings