Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc9.237 Carica papaya HOM05D004480 ORTHO05D005546 2.4e-232 808.5 431 100.0
Manes.17G005700 Manihot esculenta HOM05D004480 ORTHO05D005546 4.0e-166 588.6 488 66.8
Ciclev10008180m.g Citrus clementina HOM05D004480 ORTHO05D005546 5.7e-165 584.7 473 69.8
Thecc.05G221800 Theobroma cacao HOM05D004480 ORTHO05D005546 6.3e-164 581.3 463 68.5
GSVIVG01038269001 Vitis vinifera HOM05D004480 ORTHO05D005546 3.1e-163 578.9 481 67.6
Atru.chr11.1453 Acer truncatum HOM05D004480 ORTHO05D005546 3.5e-162 575.5 480 68.8
Atru.chr11.1483 Acer truncatum HOM05D004480 ORTHO05D005546 3.5e-162 575.5 480 68.8
Prupe.5G084300 Prunus persica HOM05D004480 ORTHO05D005546 4.5e-162 575.1 490 67.1
MD15G1320300 Malus domestica HOM05D004480 ORTHO05D005546 1.0e-161 573.9 475 65.7
Gohir.A08G013400 Gossypium hirsutum HOM05D004480 ORTHO05D005546 2.3e-161 572.8 466 67.6
Gohir.D08G023800 Gossypium hirsutum HOM05D004480 ORTHO05D005546 2.3e-161 572.8 466 67.6
QL11p020579 Quercus lobata HOM05D004480 ORTHO05D005546 6.6e-161 571.2 482 64.9
Gorai.004G019100 Gossypium raimondii HOM05D004480 ORTHO05D005546 8.6e-161 570.9 466 67.2
Duzib128G0969 Durio zibethinus HOM05D004480 ORTHO05D005546 1.1e-160 570.5 442 68.3
MD01G1035500 Malus domestica HOM05D004480 ORTHO05D005546 2.5e-160 569.3 485 65.2
Hma1.2p1_0513F.1_g169740 Hydrangea macrophylla HOM05D004480 ORTHO05D005546 3.3e-160 568.9 481 65.3
RcHm_v2.0_Chr1g0334711 Rosa chinensis HOM05D004480 ORTHO05D005546 2.1e-159 566.2 486 63.8
FAN03G0050 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.8e-159 565.8 487 63.7
Ca_17076_v3 Cicer arietinum L. HOM05D004480 ORTHO05D005546 3.6e-159 565.5 471 65.0
CiPaw.01G203500 Carya illinoinensis HOM05D004480 ORTHO05D005546 4.7e-159 565.1 487 63.7
arahy.Tifrunner.gnm1.ann1.JT43NG Arachis hypogaea HOM05D004480 ORTHO05D005546 8.0e-159 564.3 436 68.6
arahy.Tifrunner.gnm1.ann1.0BX3U4 Arachis hypogaea HOM05D004480 ORTHO05D005546 1.8e-158 563.1 461 65.7
Cfa008538 Carpinus fangiana HOM05D004480 ORTHO05D005546 2.3e-158 562.8 475 64.8
RcHm_v2.0_Chr7g0210541 Rosa chinensis HOM05D004480 ORTHO05D005546 4.0e-158 562.0 486 63.2
FAN01G1951 Fragaria x ananassa HOM05D004480 ORTHO05D005546 3.4e-157 558.9 483 63.6
Medtr4g094615 Medicago truncatula HOM05D004480 ORTHO05D005546 3.4e-157 558.9 468 64.7
Glyma.18G043300 Glycine max HOM05D004480 ORTHO05D005546 7.5e-157 557.8 478 63.8
Nn7g35785 Nelumbo nucifera HOM05D004480 ORTHO05D005546 9.8e-157 557.4 467 64.7
PGR083G0026 Punica granatum HOM05D004480 ORTHO05D005546 9.8e-157 557.4 464 66.4
THA.LOC104827565 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 9.8e-157 557.4 469 69.5
CANSAT21G2297 Cannabis sativa HOM05D004480 ORTHO05D005546 2.2e-156 556.2 487 62.6
MSTRG.22059 Avicennia marina HOM05D004480 ORTHO05D005546 2.8e-156 555.8 490 62.7
Eucgr.H00240 Eucalyptus grandis HOM05D004480 ORTHO05D005546 1.4e-155 553.5 466 64.2
SalBow1G2458 Salvia bowleyana HOM05D004480 ORTHO05D005546 1.4e-155 553.5 463 66.3
FAN12G3644 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.8e-155 553.1 473 63.4
Sed0006001 Sechium edule HOM05D004480 ORTHO05D005546 2.4e-155 552.7 477 64.6
Actinidia18384 Actinidia chinensis HOM05D004480 ORTHO05D005546 3.1e-155 552.4 473 65.3
A03p48230 Brassica napus HOM05D004480 ORTHO05D005546 3.1e-155 552.4 461 67.0
CsaV3_3G003300 Cucumis sativus L. HOM05D004480 ORTHO05D005546 3.1e-155 552.4 477 64.4
Hund12181 Selenicereus undatus HOM05D004480 ORTHO05D005546 3.1e-155 552.4 470 68.5
FvH4_4g10760 Fragaria vesca HOM05D004480 ORTHO05D005546 7.0e-155 551.2 473 63.2
Lj1g0018422 Lotus japonicus HOM05D004480 ORTHO05D005546 7.0e-155 551.2 476 62.4
Cc03_g16200 Coffea canephora HOM05D004480 ORTHO05D005546 9.2e-155 550.8 470 64.5
MELO3C013997.2 Cucumis melo HOM05D004480 ORTHO05D005546 1.6e-154 550.1 477 64.6
C07p46260 Brassica napus HOM05D004480 ORTHO05D005546 2.0e-154 549.7 459 67.3
PGR119G0799 Punica granatum HOM05D004480 ORTHO05D005546 2.0e-154 549.7 478 64.4
Phvul.001G227600 Phaseolus vulgaris HOM05D004480 ORTHO05D005546 2.7e-154 549.3 480 63.8
BcaC06g33042 Brassica carinata HOM05D004480 ORTHO05D005546 3.5e-154 548.9 472 65.0
BraA03t13931Z Brassica rapa HOM05D004480 ORTHO05D005546 3.5e-154 548.9 466 65.9
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 4.5e-154 548.5 472 63.8
Sc03g0007800 Simmondsia chinensis HOM05D004480 ORTHO05D005546 4.5e-154 548.5 455 66.2
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 1.0e-153 547.4 431 67.5
CSS0010781 Camellia sinensis var. sinensis HOM05D004480 ORTHO05D005546 1.3e-153 547.0 469 63.5
THA.LOC104802357 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 1.3e-153 547.0 462 69.0
BcaB01g00536 Brassica carinata HOM05D004480 ORTHO05D005546 1.7e-153 546.6 462 66.9
SGA_v2.0_scaffold19G08907 Striga asiatica HOM05D004480 ORTHO05D005546 1.7e-153 546.6 479 62.2
MBI07_g30868_MAGBIO Magnolia biondii HOM05D004480 ORTHO05D005546 2.3e-153 546.2 499 60.7
A09p44300 Brassica napus HOM05D004480 ORTHO05D005546 2.9e-153 545.8 460 68.9
vmacro20035 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 2.9e-153 545.8 480 64.2
Sp5g10950 Schrenkiella parvula HOM05D004480 ORTHO05D005546 8.6e-153 544.3 479 63.3
Lalb_Chr08g0233091 Lupinus albus HOM05D004480 ORTHO05D005546 1.5e-152 543.5 482 63.3
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 1.9e-152 543.1 475 62.1
SGA_v2.0_scaffold25G11023 Striga asiatica HOM05D004480 ORTHO05D005546 1.9e-152 543.1 489 60.7
BraA09t39892Z Brassica rapa HOM05D004480 ORTHO05D005546 7.3e-152 541.2 466 66.7
BraA01t02261Z Brassica rapa HOM05D004480 ORTHO05D005546 9.5e-152 540.8 469 68.0
A01p23550 Brassica napus HOM05D004480 ORTHO05D005546 1.6e-151 540.0 461 68.5
TPR.G4936 Trifolium pratense HOM05D004480 ORTHO05D005546 1.6e-151 540.0 475 63.4
Carub.0005s1764 Capsella rubella HOM05D004480 ORTHO05D005546 3.6e-151 538.9 459 66.9
Migut.N03010 Erythranthe guttata HOM05D004480 ORTHO05D005546 3.6e-151 538.9 474 60.8
Sopen01g003100 Solanum pennellii HOM05D004480 ORTHO05D005546 4.7e-151 538.5 474 63.7
BcaNung06395 Brassica carinata HOM05D004480 ORTHO05D005546 6.1e-151 538.1 469 64.0
C01p29210 Brassica napus HOM05D004480 ORTHO05D005546 6.1e-151 538.1 469 64.0
BolC7t45142H Brassica oleracea HOM05D004480 ORTHO05D005546 1.0e-150 537.3 472 63.1
AL5G31690 Arabidopsis lyrata HOM05D004480 ORTHO05D005546 1.4e-150 537.0 457 66.3
Oeu019179.1 Olea europaea HOM05D004480 ORTHO05D005546 2.3e-150 536.2 525 58.9
BolC1t02850H Brassica oleracea HOM05D004480 ORTHO05D005546 4.0e-150 535.4 470 66.2
CARHR160850 Cardamine hirsuta HOM05D004480 ORTHO05D005546 4.0e-150 535.4 471 67.5
TAR626G1520 Trochodendron aralioides HOM05D004480 ORTHO05D005546 8.9e-150 534.3 513 58.9
FAN12G1968 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.2e-149 533.9 458 63.5
HanXRQChr15g0465141 Helianthus annuus HOM05D004480 ORTHO05D005546 1.2e-149 533.9 462 64.5
Dinv39175 Davidia involucrata HOM05D004480 ORTHO05D005546 3.4e-149 532.3 462 63.4
HanXRQChr14g0458331 Helianthus annuus HOM05D004480 ORTHO05D005546 7.5e-149 531.2 465 63.9
BcaNung00392 Brassica carinata HOM05D004480 ORTHO05D005546 9.8e-149 530.8 461 67.7
vmacro00734 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 9.8e-149 530.8 524 59.2
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 3.7e-148 528.9 485 59.6
Solyc01g007120.3 Solanum lycopersicum HOM05D004480 ORTHO05D005546 3.7e-148 528.9 480 60.0
PGSC0003DMG400021321 Solanum tuberosum HOM05D004480 ORTHO05D005546 4.1e-147 525.4 476 60.5
VMungo1383G0315 Vigna mungo HOM05D004480 ORTHO05D005546 4.1e-147 525.4 472 62.7
TAR623G1647 Trochodendron aralioides HOM05D004480 ORTHO05D005546 9.2e-147 524.2 513 58.3
Lju124A7T24 Lonicera japonica HOM05D004480 ORTHO05D005546 1.2e-146 523.9 288 86.8
TWI74G1000 Tripterygium wilfordii HOM05D004480 ORTHO05D005546 1.2e-146 523.9 491 59.7
SalBow6G1632 Salvia bowleyana HOM05D004480 ORTHO05D005546 7.8e-146 521.2 469 63.8
Oeu061379.1 Olea europaea HOM05D004480 ORTHO05D005546 1.0e-145 520.8 276 90.2
Thhalv10010355m.g Eutrema salsugineum HOM05D004480 ORTHO05D005546 2.3e-145 519.6 467 63.8
Dinv41802 Davidia involucrata HOM05D004480 ORTHO05D005546 5.0e-145 518.5 274 91.2
AT3G51270 Arabidopsis thaliana HOM05D004480 ORTHO05D005546 8.6e-145 517.7 274 90.1
Sabra17G0005500 Salix brachista HOM05D000001 ORTHO05D005546 1.5e-144 516.9 529 55.8
DCAR_011737 Daucus carota HOM05D004480 ORTHO05D005546 1.9e-144 516.5 523 57.2
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 2.5e-144 516.2 458 62.7
COL.COLO4_23990 Corchorus olitorius HOM05D004480 ORTHO05D005546 3.3e-144 515.8 450 65.3
VMungo1309G1911 Vigna mungo HOM05D004480 ORTHO05D005546 3.3e-144 515.8 471 61.1
ATR0743G007 Amborella trichopoda HOM05D004480 ORTHO05D005546 4.7e-143 511.9 487 58.9
Glyma.11G213400 Glycine max HOM05D004480 ORTHO05D005546 4.7e-143 511.9 307 83.1
Sed0005158 Sechium edule HOM05D004480 ORTHO05D005546 4.7e-143 511.9 375 72.0
FvH4_7g06440 Fragaria vesca HOM05D004480 ORTHO05D005546 1.8e-142 510.0 274 88.3
Psat7g090480 Pisum sativum HOM05D004480 ORTHO05D005546 3.1e-142 509.2 307 81.4
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 4.0e-142 508.8 472 61.0
HanXRQChr15g0464981 Helianthus annuus HOM05D004480 ORTHO05D005546 7.5e-141 504.6 303 81.2
Nitab4.5_0002686g0020 Nicotiana tabacum HOM05D004480 ORTHO05D005546 7.5e-141 504.6 472 62.3
PSO675G8718 Papaver somniferum HOM05D004480 ORTHO05D005546 9.8e-141 504.2 458 61.4
PSO732G0488 Papaver somniferum HOM05D004480 ORTHO05D005546 9.8e-141 504.2 458 61.1
BcaC09g50090 Brassica carinata HOM05D004480 ORTHO05D005546 2.9e-140 502.7 381 72.7
ECA248G1292 Erigeron canadensis HOM05D004480 ORTHO05D005546 1.9e-139 500.0 462 60.4
C08p26540 Brassica napus HOM05D004480 ORTHO05D005546 9.2e-139 497.7 467 63.4
BolC8t50268H Brassica oleracea HOM05D004480 ORTHO05D005546 1.0e-137 494.2 482 61.6
Os01g0888700 Oryza sativa ssp. japonica HOM05D004480 ORTHO05D005546 5.1e-137 491.9 493 57.8
Rhsim09G0001300 Rhododendron simsii HOM05D004480 ORTHO05D005546 1.1e-136 490.7 443 61.6
AUR62001702 Chenopodium quinoa HOM05D004480 ORTHO05D005546 6.8e-134 481.5 442 61.5
Zm00001eb365940 Zea mays HOM05D004480 ORTHO05D005546 1.5e-133 480.3 499 54.1
Zm00001eb145320 Zea mays HOM05D004480 ORTHO05D005546 2.6e-133 479.6 479 57.0
Mapoly0052s0036 Marchantia polymorpha HOM05D004480 ORTHO05D005546 4.9e-132 475.3 463 55.7
Haze_11102 Corylus avellana HOM05D004480 ORTHO05D005546 1.1e-131 474.2 438 60.5
unitig_62.g23773 Utricularia gibba HOM05D004480 ORTHO05D005546 4.7e-127 458.8 504 53.2
SMO203G0211 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 8.1e-127 458.0 316 70.6
CDE02G2467 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.8e-126 456.8 275 80.0
CAN.G574.17 Capsicum annuum HOM05D004480 ORTHO05D005546 2.4e-126 456.4 443 57.6
Duzib177G0198 Durio zibethinus HOM05D004480 ORTHO05D005546 6.8e-126 454.9 404 63.9
Aqoxy2G00126 Aquilegia oxysepala HOM05D004480 ORTHO05D005546 1.7e-124 450.3 486 54.1
AagrBONN_evm.TU.Sc2ySwM_228.3019 Anthoceros agrestis HOM05D004480 ORTHO05D005546 2.9e-124 449.5 274 77.4
Pp3c20_22360 Physcomitrium patens HOM05D004480 ORTHO05D005546 7.1e-123 444.9 460 54.8
Lsat_1_v5_gn_5_33821 Lactuca sativa HOM05D004480 ORTHO05D005546 1.6e-122 443.7 466 56.0
CBR_g22944 Chara braunii HOM05D004480 ORTHO05D005546 1.7e-121 440.3 268 75.7
CDE09G0719 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 6.9e-118 428.3 233 86.7
SHI53263 Sapria himalayana HOM05D004480 ORTHO05D005546 1.3e-111 407.5 307 68.7
ClCG00G001030 Citrullus lanatus HOM05D004480 ORTHO05D005546 1.4e-110 404.1 259 79.2
AUR62020079 Chenopodium quinoa HOM05D004480 ORTHO05D005546 9.3e-107 391.3 433 54.7
CDE09G0674 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 3.7e-103 379.4 429 52.9
PRCOL_00001861 Prasinoderma coloniale HOM05D004480 ORTHO05D005546 8.1e-103 378.3 277 65.7
ClCG10G003270 Citrullus lanatus HOM05D004480 ORTHO05D005546 1.2e-101 374.4 560 45.2
CDE02G0168 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 2.2e-100 370.2 373 55.2
CDE09G1409 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.3e-95 354.4 422 50.9
MCO09G317 Micromonas commoda HOM05D004480 ORTHO05D005546 1.1e-94 351.3 280 61.8
SEGI_41177 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 2.8e-87 326.6 394 50.8
CDE09G0134 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.9e-83 313.9 231 68.0
Migut.O00494 Erythranthe guttata HOM05D004480 ORTHO05D005546 8.8e-81 305.1 445 45.4
Cre03.g159900 Chlamydomonas reinhardtii HOM05D004480 ORTHO05D005546 7.2e-75 285.4 200 68.0
Cfa009489 Carpinus fangiana HOM05D004480 ORTHO05D005546 8.5e-52 208.8 325 39.4
Ciclev10020879m.g Citrus clementina HOM05D004480 ORTHO05D005546 1.2e-45 188.3 464 37.7
SMO327G0006 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 1.2e-37 161.8 120 69.2
SEGI_14248 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 4.6e-29 133.3 81 77.8
HPP92_020625 Vanilla planifolia HOM05D004480 ORTHO05D005546 1.5e-24 118.2 247 38.1
ClCG00G000020 Citrullus lanatus HOM05D004480 ORTHO05D005546 1.6e-13 81.6 376 27.4
Zm00001eb233680 Zea mays HOM05D009386 ORTHO05D011419 6.6e-12 76.3 160 36.9
Haze_07135 Corylus avellana HOM05D003858 ORTHO05D005878 4.7e-10 70.1 207 26.6
Cfa015653 Carpinus fangiana HOM05D003858 ORTHO05D005878 1.8e-09 68.2 207 27.5
FAN07G0363 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.7e-07 61.6 196 31.1
Medtr8g090145 Medicago truncatula HOM05D004480 ORTHO05D005546 2.2e-07 61.2 105 42.9
Medtr4g087670 Medicago truncatula HOM05D004480 ORTHO05D263555 7.1e-06 56.2 44 52.3


User provided reference genes

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