Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc85.62 Carica papaya HOM05D004581 ORTHO05D006211 4.0e-268 927.5 473 100.0
Duzib093G1426 Durio zibethinus HOM05D004581 ORTHO05D006211 2.2e-149 533.1 849 43.5
Haze_20018 Corylus avellana HOM05D004581 ORTHO05D006211 6.3e-149 531.6 850 42.8
COL.COLO4_29354 Corchorus olitorius HOM05D004581 ORTHO05D006211 1.8e-148 530.0 850 43.1
Cfa020147 Carpinus fangiana HOM05D004581 ORTHO05D006211 2.7e-147 526.2 850 42.5
QL07p024348 Quercus lobata HOM05D004581 ORTHO05D006211 5.0e-146 521.9 840 43.0
QL07p024412 Quercus lobata HOM05D004581 ORTHO05D006211 5.0e-146 521.9 840 43.0
Thecc.05G174500 Theobroma cacao HOM05D004581 ORTHO05D006211 8.5e-146 521.2 849 42.8
Potri.006G194200 Populus trichocarpa HOM05D004581 ORTHO05D006211 1.9e-145 520.0 854 42.2
Atru.chr8.1150 Acer truncatum HOM05D004581 ORTHO05D006211 2.5e-145 519.6 847 42.7
Gohir.D04G089200 Gossypium hirsutum HOM05D004581 ORTHO05D006211 2.5e-145 519.6 853 42.2
MD12G1055200 Malus domestica HOM05D004581 ORTHO05D006211 3.2e-145 519.2 862 41.2
Gorai.012G099300 Gossypium raimondii HOM05D004581 ORTHO05D006211 7.2e-145 518.1 853 42.1
QL07p024331 Quercus lobata HOM05D004581 ORTHO05D006211 9.4e-145 517.7 840 42.9
MD14G1054400 Malus domestica HOM05D004581 ORTHO05D006211 1.6e-144 516.9 863 40.8
RcHm_v2.0_Chr3g0479271 Rosa chinensis HOM05D004581 ORTHO05D006211 2.7e-144 516.2 859 41.2
Gohir.A04G057400 Gossypium hirsutum HOM05D004581 ORTHO05D006211 3.6e-144 515.8 853 42.0
TWI53G1098 Tripterygium wilfordii HOM05D004581 ORTHO05D006211 6.1e-144 515.0 848 42.2
Thhalv10012676m.g Eutrema salsugineum HOM05D004581 ORTHO05D006211 2.3e-143 513.1 850 41.5
Ciclev10011052m.g Citrus clementina HOM05D004581 ORTHO05D006211 5.2e-143 511.9 858 41.7
FAN05G2417 Fragaria x ananassa HOM05D004581 ORTHO05D006211 6.8e-143 511.5 860 41.4
Eucgr.K01849 Eucalyptus grandis HOM05D004581 ORTHO05D006211 1.2e-142 510.8 852 41.9
PGR142G1146 Punica granatum HOM05D004581 ORTHO05D006211 1.2e-142 510.8 850 41.9
Sp6g36190 Schrenkiella parvula HOM05D004581 ORTHO05D006211 2.6e-142 509.6 850 41.3
FvH4_6g21970 Fragaria vesca HOM05D004581 ORTHO05D006211 5.7e-142 508.4 849 41.3
CiPaw.10G025500 Carya illinoinensis HOM05D004581 ORTHO05D006211 1.7e-141 506.9 849 41.5
AL6G16770 Arabidopsis lyrata HOM05D004581 ORTHO05D006211 2.8e-141 506.1 850 41.2
Potri.016G059900 Populus trichocarpa HOM05D004581 ORTHO05D006211 2.8e-141 506.1 852 41.2
FAN14G2436 Fragaria x ananassa HOM05D004581 ORTHO05D006211 4.8e-141 505.4 849 41.1
Carub.0006s0556 Capsella rubella HOM05D004581 ORTHO05D006211 1.4e-140 503.8 840 41.2
Sabra06G0149000 Salix brachista HOM05D004581 ORTHO05D006211 1.8e-140 503.4 854 41.0
AT5G06680 Arabidopsis thaliana HOM05D004581 ORTHO05D006211 4.1e-140 502.3 846 41.0
CARHR206520 Cardamine hirsuta HOM05D004581 ORTHO05D006211 4.1e-140 502.3 840 41.1
MELO3C009016.2 Cucumis melo HOM05D004581 ORTHO05D006211 5.9e-139 498.4 845 40.2
CsaV3_4G031280 Cucumis sativus L. HOM05D004581 ORTHO05D006211 2.3e-138 496.5 845 40.1
TWI77G0968 Tripterygium wilfordii HOM05D004581 ORTHO05D006211 2.9e-138 496.1 845 41.7
Aa31sc40G20 Aethionema arabicum HOM05D004581 ORTHO05D006211 1.5e-137 493.8 843 40.5
CANSAT64G2519 Cannabis sativa HOM05D004581 ORTHO05D006211 2.5e-137 493.0 855 40.9
THA.LOC104809935 Tarenaya hassleriana HOM05D004581 ORTHO05D006211 5.2e-135 485.3 843 40.6
FAN02G3358 Fragaria x ananassa HOM05D004581 ORTHO05D006211 8.9e-135 484.6 861 40.2
Sabra16G0062700 Salix brachista HOM05D004581 ORTHO05D006211 3.4e-134 482.6 851 40.2
ClCG04G001070 Citrullus lanatus HOM05D004581 ORTHO05D006211 4.4e-134 482.3 847 39.6
Sed0021834 Sechium edule HOM05D004581 ORTHO05D006211 9.8e-134 481.1 840 39.3
CiPaw.09G028800 Carya illinoinensis HOM05D004581 ORTHO05D006211 2.7e-131 473.0 507 55.8
Manes.09G037300 Manihot esculenta HOM05D004581 ORTHO05D006211 1.0e-130 471.1 855 39.2
Hund19211 Selenicereus undatus HOM05D004581 ORTHO05D006211 2.5e-129 466.5 845 39.3
Nitab4.5_0000663g0140 Nicotiana tabacum HOM05D004581 ORTHO05D006211 3.3e-129 466.1 804 39.8
BolC2t06246H Brassica oleracea HOM05D004581 ORTHO05D006211 8.0e-128 461.5 840 39.3
C02p02810 Brassica napus HOM05D004581 ORTHO05D006211 1.0e-127 461.1 840 39.4
VMungo1383G1342 Vigna mungo HOM05D004581 ORTHO05D006211 1.8e-127 460.3 766 41.8
BraA02t04889Z Brassica rapa HOM05D004581 ORTHO05D006211 6.8e-127 458.4 839 39.1
Lalb_Chr18g0048011 Lupinus albus HOM05D004581 ORTHO05D006211 1.2e-126 457.6 851 38.3
TAR369G0383 Trochodendron aralioides HOM05D004581 ORTHO05D006211 2.0e-126 456.8 853 38.7
AUR62015335 Chenopodium quinoa HOM05D004581 ORTHO05D006211 4.9e-125 452.2 518 54.1
Nitab4.5_0006360g0040 Nicotiana tabacum HOM05D004581 ORTHO05D006211 3.2e-124 449.5 821 39.1
Duzib106G1052 Durio zibethinus HOM05D004581 ORTHO05D006211 2.0e-123 446.8 505 54.7
Cc06_g15670 Coffea canephora HOM05D004581 ORTHO05D006211 1.3e-122 444.1 934 36.0
Nn7g35977 Nelumbo nucifera HOM05D004581 ORTHO05D006211 2.3e-122 443.4 851 37.5
DCAR_013660 Daucus carota HOM05D004581 ORTHO05D006211 5.0e-122 442.2 873 37.1
Migut.J01852 Erythranthe guttata HOM05D004581 ORTHO05D006211 6.6e-122 441.8 923 36.4
EL10Ac2g03990 Beta vulgaris HOM05D004581 ORTHO05D006211 1.1e-121 441.0 851 37.8
TAR623G0668 Trochodendron aralioides HOM05D004581 ORTHO05D006211 1.5e-121 440.7 814 38.9
arahy.Tifrunner.gnm1.ann1.U2Q4B5 Arachis hypogaea HOM05D004581 ORTHO05D006211 2.5e-121 439.9 853 37.9
arahy.Tifrunner.gnm1.ann1.6E61XV Arachis hypogaea HOM05D004581 ORTHO05D006211 4.3e-121 439.1 853 37.9
Sc25g0005070 Simmondsia chinensis HOM05D004581 ORTHO05D006211 7.3e-121 438.3 499 53.5
Glyma.19G149500 Glycine max HOM05D004581 ORTHO05D006211 1.6e-120 437.2 836 38.6
Rhsim03G0004600 Rhododendron simsii HOM05D004581 ORTHO05D006211 8.0e-120 434.9 919 35.6
CSS0001135 Camellia sinensis var. sinensis HOM05D004581 ORTHO05D006211 2.0e-118 430.3 857 37.8
Ca_08535_v3 Cicer arietinum L. HOM05D004581 ORTHO05D006211 1.3e-117 427.6 853 37.4
Lsat_1_v5_gn_5_165321 Lactuca sativa HOM05D004581 ORTHO05D006211 2.9e-117 426.4 873 36.2
MSTRG.19916 Avicennia marina HOM05D004581 ORTHO05D006211 3.7e-117 426.0 937 35.1
PSO384G2020 Papaver somniferum HOM05D004581 ORTHO05D006211 3.7e-117 426.0 858 36.1
Aqoxy1G00145 Aquilegia oxysepala HOM05D004581 ORTHO05D006211 8.3e-117 424.9 859 36.1
PSO339G4020 Papaver somniferum HOM05D004581 ORTHO05D006211 1.1e-116 424.5 861 36.2
Lj1g0024119 Lotus japonicus HOM05D004581 ORTHO05D006211 1.4e-116 424.1 839 37.5
Phvul.001G144000 Phaseolus vulgaris HOM05D004581 ORTHO05D006211 1.4e-116 424.1 837 37.8
PGSC0003DMG400002716 Solanum tuberosum HOM05D004581 ORTHO05D006211 3.2e-116 422.9 926 34.9
Sopen09g003860 Solanum pennellii HOM05D004581 ORTHO05D006211 9.2e-116 421.4 926 34.6
Glyma.03G146200 Glycine max HOM05D004581 ORTHO05D006211 1.6e-115 420.6 839 38.1
SGA_v2.0_scaffold105G30506 Striga asiatica HOM05D004581 ORTHO05D006211 1.6e-115 420.6 938 35.0
Solyc09g009140.3 Solanum lycopersicum HOM05D004581 ORTHO05D006211 2.1e-115 420.2 926 34.6
SalBow6G0811 Salvia bowleyana HOM05D004581 ORTHO05D006211 4.6e-115 419.1 929 34.7
TPR.G35787 Trifolium pratense HOM05D004581 ORTHO05D006211 1.3e-114 417.5 843 36.5
vmacro07891 Vaccinium macrocarpon HOM05D004581 ORTHO05D006211 1.3e-114 417.5 921 35.6
HanXRQChr01g0010041 Helianthus annuus HOM05D004581 ORTHO05D006211 6.2e-112 408.7 859 34.9
MBI19_g17421_MAGBIO Magnolia biondii HOM05D004581 ORTHO05D006211 8.1e-112 408.3 485 50.1
Medtr7g093560 Medicago truncatula HOM05D004581 ORTHO05D006211 8.1e-112 408.3 840 36.4
Peaxi162Scf00169g01812 Petunia axillaris HOM05D004581 ORTHO05D006211 1.4e-111 407.5 546 46.3
Lju124A23G70 Lonicera japonica HOM05D004581 ORTHO05D006211 1.2e-110 404.4 831 35.6
ECA248G3562 Erigeron canadensis HOM05D004581 ORTHO05D006211 2.6e-110 403.3 496 49.8
BraA10t45012Z Brassica rapa HOM05D004581 ORTHO05D006211 5.8e-110 402.1 652 43.6
A10p29710 Brassica napus HOM05D004581 ORTHO05D006211 1.7e-109 400.6 652 43.4
SHI31781 Sapria himalayana HOM05D004581 ORTHO05D006211 1.2e-107 394.4 499 48.9
GSVIVG01033474001 Vitis vinifera HOM05D004581 ORTHO05D006211 1.2e-104 384.4 831 36.7
unitig_0.g528 Utricularia gibba HOM05D004581 ORTHO05D006211 6.2e-104 382.1 928 33.2
CDE06G1527 Ceratophyllum demersum HOM05D004581 ORTHO05D006211 1.1e-100 371.3 580 41.4
Prupe.7G080400 Prunus persica HOM05D004581 ORTHO05D006211 2.1e-99 367.1 815 34.8
Actinidia14375 Actinidia chinensis HOM05D004581 ORTHO05D006211 1.6e-96 357.5 467 48.2
CDE04G2925 Ceratophyllum demersum HOM05D004581 ORTHO05D006211 4.7e-96 355.9 507 43.0
CAN.G824.31 Capsicum annuum HOM05D004581 ORTHO05D006211 3.4e-94 349.7 684 36.7
BcaB05g21655 Brassica carinata HOM05D004581 ORTHO05D006211 6.2e-88 328.9 292 62.0
Zm00001eb314430 Zea mays HOM05D004581 ORTHO05D006211 3.1e-87 326.6 497 43.9
Os09g0446200 Oryza sativa ssp. japonica HOM05D004581 ORTHO05D006211 9.0e-87 325.1 504 41.9
Pp3c24_16220 Physcomitrium patens HOM05D004581 ORTHO05D006211 1.3e-80 304.7 538 36.4
SMO356G0383 Selaginella moellendorffii HOM05D004581 ORTHO05D006211 4.8e-80 302.8 442 41.2
Pp3c20_16750 Physcomitrium patens HOM05D004581 ORTHO05D006211 6.2e-80 302.4 537 36.5
ATR0598G120 Amborella trichopoda HOM05D004581 ORTHO05D006211 5.3e-79 299.3 360 47.2
Lsat_1_v5_gn_9_26020 Lactuca sativa HOM05D004581 ORTHO05D006211 1.5e-78 297.7 498 41.0
Mapoly0001s0406 Marchantia polymorpha HOM05D004581 ORTHO05D006211 1.6e-75 287.7 539 36.2
ECA247G1565 Erigeron canadensis HOM05D004581 ORTHO05D006211 3.0e-74 283.5 832 29.1
Dinv16368 Davidia involucrata HOM05D004581 ORTHO05D006211 7.4e-73 278.9 609 35.1
Ah.13g075710 Amaranthus hybridus HOM05D004581 ORTHO05D006211 2.9e-69 266.9 610 34.3
HanXRQChr15g0491321 Helianthus annuus HOM05D004581 ORTHO05D006211 7.1e-68 262.3 820 29.3
HPP92_028667 Vanilla planifolia HOM05D004581 ORTHO05D006211 1.9e-65 254.2 326 48.5
Psat3g067160 Pisum sativum HOM05D004581 ORTHO05D006211 2.8e-64 250.4 617 32.1
Actinidia14374 Actinidia chinensis HOM05D004581 ORTHO05D006211 1.4e-63 248.1 484 39.7
BcaC06g32554 Brassica carinata HOM05D004581 ORTHO05D006211 1.3e-53 214.9 436 36.9
Oeu034269.1 Olea europaea HOM05D004581 ORTHO05D006211 1.0e-45 188.7 293 43.7
MCO03G564 Micromonas commoda HOM05D004581 ORTHO05D006211 1.1e-41 175.3 478 30.1
CBR_g7989 Chara braunii HOM05D004581 ORTHO05D006211 8.5e-37 159.1 458 28.6
Actinidia22053 Actinidia chinensis HOM05D004581 ORTHO05D006211 9.4e-36 155.6 166 56.0
BcaB05g21654 Brassica carinata HOM05D004581 ORTHO05D006211 1.3e-32 145.2 417 29.7
HPP92_028617 Vanilla planifolia HOM05D004581 ORTHO05D006211 2.7e-22 110.9 73 72.6
AagrBONN_evm.TU.Sc2ySwM_344.2103 Anthoceros agrestis HOM05D004581 ORTHO05D006211 8.6e-21 105.9 79 67.1
Cre11.g467745 Chlamydomonas reinhardtii HOM05D004581 ORTHO05D006211 4.2e-20 103.6 342 27.8
ATR0598G264 Amborella trichopoda HOM05D004581 ORTHO05D006211 5.5e-20 103.2 98 53.1
HPP92_028618 Vanilla planifolia HOM05D004581 ORTHO05D006211 7.2e-20 102.8 70 65.7
Zm00001eb065490 Zea mays HOM05D004581 ORTHO05D024356 1.1e-15 89.0 67 58.2
Zm00001eb115360 Zea mays HOM05D004581 ORTHO05D024356 1.1e-15 89.0 67 58.2
Zm00001eb199010 Zea mays HOM05D004581 ORTHO05D024356 1.1e-15 89.0 67 58.2
Actinidia32405 Actinidia chinensis HOM05D004581 ORTHO05D006211 3.1e-15 87.4 355 25.6
Actinidia22052 Actinidia chinensis HOM05D004581 ORTHO05D006211 2.7e-14 84.3 80 66.2
PRCOL_00005400 Prasinoderma coloniale HOM05D004581 ORTHO05D006211 4.5e-14 83.6 265 27.2
Ah.07g200190 Amaranthus hybridus HOM05D000211 ORTHO05D002285 2.9e-13 80.9 65 66.2
BcaC06g32384 Brassica carinata HOM05D004581 ORTHO05D024356 3.9e-13 80.5 103 45.6
AagrBONN_evm.TU.Sc2ySwM_344.2102 Anthoceros agrestis HOM05D004581 ORTHO05D006211 6.6e-13 79.7 52 67.3
Pp3c8_15910 Physcomitrium patens HOM05D004581 ORTHO05D006211 2.3e-10 71.2 89 51.7
Actinidia22051 Actinidia chinensis HOM05D004581 ORTHO05D006211 1.2e-09 68.9 73 54.8
Zm00001eb056850 Zea mays HOM05D001691 ORTHO05D001704 9.8e-09 65.9 43 79.1
AagrBONN_evm.TU.Sc2ySwM_344.2104 Anthoceros agrestis HOM05D004581 ORTHO05D006211 1.3e-08 65.5 176 30.1
Zm00001eb409410 Zea mays HOM05D004581 ORTHO05D006211 5.4e-07 60.1 53 54.7
Actinidia32406 Actinidia chinensis HOM05D004581 ORTHO05D006211 1.6e-06 58.5 76 53.9
Oeu047209.1 Olea europaea HOM05D004581 ORTHO05D006211 1.6e-06 58.5 85 40.0
Zm00001eb056090 Zea mays HOM05D000739 ORTHO05D007029 2.7e-06 57.8 35 82.9
CANSAT25G3114 Cannabis sativa HOM05D004581 ORTHO05D006211 3.5e-06 57.4 39 76.9


User provided reference genes

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