Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc85.58 Carica papaya HOM05D000043 ORTHO05D034067 1.7e-83 312.8 179 100.0
Hma1.2p1_0431F.1_g151530 Hydrangea macrophylla HOM05D000043 ORTHO05D000600 3.5e-23 112.5 182 44.0
Rhsim03G0005100 Rhododendron simsii HOM05D000043 ORTHO05D000600 6.5e-22 108.2 193 41.5
Potri.006G193900 Populus trichocarpa HOM05D000043 ORTHO05D000600 8.5e-22 107.8 193 40.4
Manes.09G036800 Manihot esculenta HOM05D000043 ORTHO05D000600 1.1e-21 107.5 177 46.3
Manes.08G044000 Manihot esculenta HOM05D000043 ORTHO05D000600 5.5e-21 105.1 175 44.6
TAR633G2088 Trochodendron aralioides HOM05D000043 ORTHO05D000600 5.5e-21 105.1 175 44.6
Prupe.7G079400 Prunus persica HOM05D000043 ORTHO05D000600 3.6e-20 102.4 176 42.0
CANSAT64G1695 Cannabis sativa HOM05D000043 ORTHO05D000600 4.7e-20 102.1 179 41.3
TWI53G0430 Tripterygium wilfordii HOM05D000043 ORTHO05D000600 8.0e-20 101.3 188 45.2
RcHm_v2.0_Chr3g0479331 Rosa chinensis HOM05D000043 ORTHO05D000600 1.0e-19 100.9 94 58.5
Dinv24060 Davidia involucrata HOM05D000043 ORTHO05D000600 1.4e-19 100.5 170 43.5
QL07p024217 Quercus lobata HOM05D000043 ORTHO05D000600 5.2e-19 98.6 165 41.2
Solyc10g078910.3 Solanum lycopersicum HOM05D000043 ORTHO05D000600 1.5e-18 97.1 102 53.9
Nitab4.5_0002343g0030 Nicotiana tabacum HOM05D000043 ORTHO05D000600 2.0e-18 96.7 200 35.5
CiPaw.10G025700 Carya illinoinensis HOM05D000043 ORTHO05D000600 4.4e-18 95.5 180 42.2
Sopen10g029530 Solanum pennellii HOM05D000043 ORTHO05D000600 4.4e-18 95.5 102 53.9
CiPaw.09G029300 Carya illinoinensis HOM05D000043 ORTHO05D000600 5.7e-18 95.1 217 38.7
Cc06_g15730 Coffea canephora HOM05D000043 ORTHO05D000600 7.5e-18 94.7 150 43.3
Nitab4.5_0000105g0190 Nicotiana tabacum HOM05D000043 ORTHO05D000600 7.5e-18 94.7 203 34.5
Sabra16G0062100 Salix brachista HOM05D000043 ORTHO05D000600 7.5e-18 94.7 187 39.0
Potri.016G059300 Populus trichocarpa HOM05D000043 ORTHO05D000600 9.8e-18 94.4 187 37.4
PGR004G2511 Punica granatum HOM05D000043 ORTHO05D000600 9.8e-18 94.4 175 44.6
MELO3C009613.2 Cucumis melo HOM05D000043 ORTHO05D000600 1.7e-17 93.6 99 61.6
MSTRG.10849 Avicennia marina HOM05D000043 ORTHO05D000600 2.2e-17 93.2 204 36.3
Thhalv10012993m.g Eutrema salsugineum HOM05D000043 ORTHO05D000600 2.2e-17 93.2 136 45.6
FAN05G3512 Fragaria x ananassa HOM05D000043 ORTHO05D000600 2.8e-17 92.8 172 41.3
PGSC0003DMG400011446 Solanum tuberosum HOM05D000043 ORTHO05D000600 2.8e-17 92.8 170 38.8
FvH4_6g22040 Fragaria vesca HOM05D000043 ORTHO05D000600 3.7e-17 92.4 171 48.5
FAN14G1102 Fragaria x ananassa HOM05D000043 ORTHO05D000600 3.7e-17 92.4 171 48.5
CsaV3_3G038690 Cucumis sativus L. HOM05D000043 ORTHO05D000600 4.8e-17 92.0 181 43.1
PSO339G0282 Papaver somniferum HOM05D000043 ORTHO05D000600 4.8e-17 92.0 138 42.8
FAN02G0957 Fragaria x ananassa HOM05D000043 ORTHO05D000600 1.4e-16 90.5 172 40.7
FAN09G3110 Fragaria x ananassa HOM05D000043 ORTHO05D000600 1.4e-16 90.5 172 40.7
Phvul.001G143600 Phaseolus vulgaris HOM05D000043 ORTHO05D000600 1.4e-16 90.5 174 40.8
Actinidia17281 Actinidia chinensis HOM05D000043 ORTHO05D000600 1.8e-16 90.1 193 40.9
Aqoxy1G00132 Aquilegia oxysepala HOM05D000043 ORTHO05D000600 1.8e-16 90.1 99 50.5
ClCG10G017630 Citrullus lanatus HOM05D000043 ORTHO05D000600 2.4e-16 89.7 179 43.6
Oeu006208.1 Olea europaea HOM05D000043 ORTHO05D000600 3.1e-16 89.4 199 37.7
Peaxi162Scf00480g00059 Petunia axillaris HOM05D000043 ORTHO05D000600 4.1e-16 89.0 91 56.0
Dinv14318 Davidia involucrata HOM05D000043 ORTHO05D000600 7.0e-16 88.2 187 41.2
BcaC06g32386 Brassica carinata HOM05D000043 ORTHO05D000600 9.1e-16 87.8 134 44.8
TWI74G0898 Tripterygium wilfordii HOM05D000043 ORTHO05D000600 9.1e-16 87.8 185 40.5
C09p70060 Brassica napus HOM05D000043 ORTHO05D000600 1.6e-15 87.0 141 43.3
BolC9t59749H Brassica oleracea HOM05D000043 ORTHO05D000600 1.6e-15 87.0 141 43.3
MD12G1055700 Malus domestica HOM05D000043 ORTHO05D000600 1.6e-15 87.0 74 60.8
Solyc10g080550.2 Solanum lycopersicum HOM05D000043 ORTHO05D000600 1.6e-15 87.0 91 56.0
A10p29690 Brassica napus HOM05D000043 ORTHO05D000600 2.0e-15 86.7 131 42.7
TWI77G0891 Tripterygium wilfordii HOM05D000043 ORTHO05D000600 2.7e-15 86.3 204 38.2
VMungo1383G1720 Vigna mungo HOM05D000043 ORTHO05D000600 3.5e-15 85.9 180 41.1
BraA10t45010Z Brassica rapa HOM05D000043 ORTHO05D000600 4.5e-15 85.5 134 42.5
CARHR206500 Cardamine hirsuta HOM05D000043 ORTHO05D000600 4.5e-15 85.5 156 39.1
PSO384G3361 Papaver somniferum HOM05D000043 ORTHO05D000600 4.5e-15 85.5 183 35.0
TAR369G0126 Trochodendron aralioides HOM05D000043 ORTHO05D000600 4.5e-15 85.5 181 38.1
SalBow6G0255 Salvia bowleyana HOM05D000043 ORTHO05D000600 5.9e-15 85.1 98 50.0
Lj1g0013039 Lotus japonicus HOM05D000043 ORTHO05D000600 7.7e-15 84.7 99 49.5
Sopen10g031090 Solanum pennellii HOM05D000043 ORTHO05D000600 7.7e-15 84.7 91 53.8
PGSC0003DMG400023668 Solanum tuberosum HOM05D000043 ORTHO05D000600 7.7e-15 84.7 169 38.5
Atru.chr8.1146 Acer truncatum HOM05D000043 ORTHO05D000600 1.0e-14 84.3 196 37.8
BcaC06g32552 Brassica carinata HOM05D000043 ORTHO05D000600 1.0e-14 84.3 144 41.0
Sp6g36160 Schrenkiella parvula HOM05D000043 ORTHO05D000600 1.0e-14 84.3 113 46.0
Gohir.D01G179000 Gossypium hirsutum HOM05D000043 ORTHO05D000600 1.3e-14 84.0 182 40.7
Nitab4.5_0001440g0080 Nicotiana tabacum HOM05D000043 ORTHO05D000600 1.7e-14 83.6 198 36.9
Cfa012464 Carpinus fangiana HOM05D000043 ORTHO05D034067 2.2e-14 83.2 73 61.6
Nitab4.5_0001079g0070 Nicotiana tabacum HOM05D000043 ORTHO05D000600 2.9e-14 82.8 193 35.8
Thecc.05G174000 Theobroma cacao HOM05D000043 ORTHO05D000600 5.0e-14 82.0 188 39.9
Gohir.D04G089700 Gossypium hirsutum HOM05D000043 ORTHO05D000600 8.5e-14 81.3 97 54.6
Nn2g15710 Nelumbo nucifera HOM05D000043 ORTHO05D000600 8.5e-14 81.3 97 51.5
AT5G06700 Arabidopsis thaliana HOM05D000043 ORTHO05D000600 1.5e-13 80.5 151 39.7
CSS0005605 Camellia sinensis var. sinensis HOM05D000043 ORTHO05D000600 1.5e-13 80.5 185 38.4
Haze_20008 Corylus avellana HOM05D000043 ORTHO05D000600 1.5e-13 80.5 180 38.9
Glyma.02G171200 Glycine max HOM05D000043 ORTHO05D000600 1.5e-13 80.5 157 40.1
Cfa007387 Carpinus fangiana HOM05D000043 ORTHO05D034067 2.5e-13 79.7 73 57.5
Gohir.A01G190700 Gossypium hirsutum HOM05D000043 ORTHO05D000600 3.2e-13 79.3 186 44.6
arahy.Tifrunner.gnm1.ann1.2WDS0D Arachis hypogaea HOM05D000043 ORTHO05D000600 5.5e-13 78.6 95 48.4
arahy.Tifrunner.gnm1.ann1.47YT22 Arachis hypogaea HOM05D000043 ORTHO05D000600 5.5e-13 78.6 95 48.4
C03p03230 Brassica napus HOM05D000043 ORTHO05D000600 5.5e-13 78.6 138 41.3
BolC3t12867H Brassica oleracea HOM05D000043 ORTHO05D000600 5.5e-13 78.6 138 41.3
Ciclev10011263m.g Citrus clementina HOM05D000043 ORTHO05D000600 7.2e-13 78.2 171 42.7
Gorai.002G223800 Gossypium raimondii HOM05D000043 ORTHO05D000600 9.4e-13 77.8 186 44.1
Duzib093G1334 Durio zibethinus HOM05D000043 ORTHO05D000600 1.2e-12 77.4 189 36.0
MBI13_g20489_MAGBIO Magnolia biondii HOM05D000043 ORTHO05D000600 1.2e-12 77.4 76 51.3
Peaxi162Scf00003g04538 Petunia axillaris HOM05D000043 ORTHO05D000600 1.2e-12 77.4 124 43.5
Cfa020152 Carpinus fangiana HOM05D000043 ORTHO05D000600 1.6e-12 77.0 180 38.3
Duzib106G1776 Durio zibethinus HOM05D000043 ORTHO05D000600 1.6e-12 77.0 176 43.8
Glyma.19G149100 Glycine max HOM05D000043 ORTHO05D000600 1.6e-12 77.0 187 36.4
Gorai.012G100000 Gossypium raimondii HOM05D000043 ORTHO05D000600 2.1e-12 76.6 97 52.6
Carub.0006s0558 Capsella rubella HOM05D000043 ORTHO05D000600 4.7e-12 75.5 146 45.2
Hund24797 Selenicereus undatus HOM05D000043 ORTHO05D000600 4.7e-12 75.5 102 50.0
Ca_12049_v3 Cicer arietinum L. HOM05D000043 ORTHO05D000600 6.1e-12 75.1 89 49.4
Gohir.A04G057500 Gossypium hirsutum HOM05D000043 ORTHO05D000600 6.1e-12 75.1 247 35.2
SGA_v2.0_scaffold69G23057 Striga asiatica HOM05D000043 ORTHO05D000600 6.1e-12 75.1 96 45.8
Lalb_Chr18g0047971 Lupinus albus HOM05D000043 ORTHO05D000600 8.0e-12 74.7 190 37.9
MSTRG.6489 Avicennia marina HOM05D000043 ORTHO05D000600 1.0e-11 74.3 90 50.0
Sed0027698 Sechium edule HOM05D000043 ORTHO05D000600 1.0e-11 74.3 92 52.2
Aa31sc40G50 Aethionema arabicum HOM05D000043 ORTHO05D000600 1.4e-11 73.9 84 46.4
AL6G16790 Arabidopsis lyrata HOM05D000043 ORTHO05D000600 1.8e-11 73.6 133 39.1
DCAR_017035 Daucus carota HOM05D000043 ORTHO05D000600 1.8e-11 73.6 168 36.9
Migut.J01848 Erythranthe guttata HOM05D000043 ORTHO05D000600 1.8e-11 73.6 170 37.6
MD14G1054900 Malus domestica HOM05D000043 ORTHO05D000600 1.8e-11 73.6 72 47.2
SGA_v2.0_scaffold105G30496 Striga asiatica HOM05D000043 ORTHO05D000600 1.8e-11 73.6 191 37.2
SalBow1G3471 Salvia bowleyana HOM05D000043 ORTHO05D000600 2.3e-11 73.2 102 46.1
THA.LOC104826773 Tarenaya hassleriana HOM05D000043 ORTHO05D000600 2.3e-11 73.2 145 37.9
A03p02830 Brassica napus HOM05D000043 ORTHO05D000600 3.0e-11 72.8 135 40.0
BraA03t09646Z Brassica rapa HOM05D000043 ORTHO05D000600 3.0e-11 72.8 135 40.0
TPR.G30309 Trifolium pratense HOM05D000043 ORTHO05D000600 3.0e-11 72.8 134 44.0
BcaB01g05998 Brassica carinata HOM05D000043 ORTHO05D000600 4.0e-11 72.4 147 38.1
Sed0004395 Sechium edule HOM05D000043 ORTHO05D000600 5.2e-11 72.0 173 39.3
Eucgr.A02463 Eucalyptus grandis HOM05D000043 ORTHO05D000600 6.8e-11 71.6 193 36.8
Phvul.007G261000 Phaseolus vulgaris HOM05D000043 ORTHO05D000600 8.8e-11 71.2 89 52.8
SalBow1G2198 Salvia bowleyana HOM05D000043 ORTHO05D000600 8.8e-11 71.2 102 45.1
Aa31sc40G60 Aethionema arabicum HOM05D000043 ORTHO05D000600 1.2e-10 70.9 91 44.0
Glyma.09G109600 Glycine max HOM05D000043 ORTHO05D000600 2.0e-10 70.1 69 58.0
TAR623G1596 Trochodendron aralioides HOM05D000043 ORTHO05D000600 2.0e-10 70.1 165 35.2
Nn7g35990 Nelumbo nucifera HOM05D000043 ORTHO05D000600 2.6e-10 69.7 181 35.9
VMungo0720G2403 Vigna mungo HOM05D000043 ORTHO05D000600 2.6e-10 69.7 93 48.4
Atru.chr8.1145 Acer truncatum HOM05D000043 ORTHO05D000600 3.4e-10 69.3 57 59.6
Duzib128G0967 Durio zibethinus HOM05D000043 ORTHO05D000600 7.5e-10 68.2 178 36.5
Glyma.03G145900 Glycine max HOM05D000043 ORTHO05D000600 7.5e-10 68.2 154 37.0
DCAR_013657 Daucus carota HOM05D000043 ORTHO05D000600 9.8e-10 67.8 174 33.3
Ca_08531_v3 Cicer arietinum L. HOM05D000043 ORTHO05D000600 1.7e-09 67.0 74 52.7
Medtr7g093450 Medicago truncatula HOM05D000043 ORTHO05D000600 3.7e-09 65.9 156 34.0
Psat3g067800 Pisum sativum HOM05D000043 ORTHO05D000600 3.7e-09 65.9 179 35.2
TPR.G18217 Trifolium pratense HOM05D000043 ORTHO05D000600 1.1e-08 64.3 97 45.4
EL10Ac3g06894 Beta vulgaris HOM05D000043 ORTHO05D000600 1.8e-08 63.5 174 35.1
Lalb_Chr15g0079041 Lupinus albus HOM05D000043 ORTHO05D000600 2.4e-08 63.2 176 32.4
Sc13g0002350 Simmondsia chinensis HOM05D000043 ORTHO05D000600 2.4e-08 63.2 182 33.0
Medtr0136s0010 Medicago truncatula HOM05D000043 ORTHO05D000600 3.1e-08 62.8 62 54.8
Lj2C365T3 Lonicera japonica HOM05D000043 ORTHO05D000600 4.1e-08 62.4 61 59.0
SHI15920 Sapria himalayana HOM05D000043 ORTHO05D000600 1.2e-07 60.8 199 34.2
THA.LOC104799290 Tarenaya hassleriana HOM05D000043 ORTHO05D000600 4.5e-07 58.9 138 33.3
CDE07G1533 Ceratophyllum demersum HOM05D000043 ORTHO05D000600 5.9e-07 58.5 77 44.2
CAN.G960.8 Capsicum annuum HOM05D000043 ORTHO05D000600 1.7e-06 57.0 179 34.1
Rhsim04G0096000 Rhododendron simsii HOM05D000043 ORTHO05D000600 1.7e-06 57.0 87 43.7
BraA02t04890Z Brassica rapa HOM05D000043 ORTHO05D000600 2.3e-06 56.6 157 31.2
HanXRQChr10g0289911 Helianthus annuus HOM05D000043 ORTHO05D000600 2.3e-06 56.6 73 50.7


User provided reference genes

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