Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc85.16 Carica papaya HOM05D004349 ORTHO05D005097 4.0e-90 334.7 169 100.0
COL.COLO4_29437 Corchorus olitorius HOM05D004349 ORTHO05D005097 1.3e-80 303.1 166 91.6
GSVIVG01033427001 Vitis vinifera HOM05D004349 ORTHO05D005097 2.9e-80 302.0 169 89.3
CiPaw.09G026100 Carya illinoinensis HOM05D004349 ORTHO05D005097 3.8e-80 301.6 169 88.8
QL11p005722 Quercus lobata HOM05D004349 ORTHO05D005097 3.8e-80 301.6 166 89.8
Ciclev10012936m.g Citrus clementina HOM05D004349 ORTHO05D005097 6.5e-80 300.8 169 89.3
Haze_20078 Corylus avellana HOM05D004349 ORTHO05D005097 1.1e-79 300.1 169 89.3
QL05p072253 Quercus lobata HOM05D004349 ORTHO05D005097 1.1e-79 300.1 166 88.6
Atru.chr8.1222 Acer truncatum HOM05D004349 ORTHO05D005097 1.4e-79 299.7 169 88.8
Aqoxy1G00443 Aquilegia oxysepala HOM05D004349 ORTHO05D005097 1.4e-79 299.7 168 89.3
Duzib093G0127 Durio zibethinus HOM05D004349 ORTHO05D005097 2.5e-79 298.9 169 88.8
Cfa020113 Carpinus fangiana HOM05D004349 ORTHO05D005097 3.2e-79 298.5 169 88.8
Gohir.D11G331900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 3.2e-79 298.5 169 88.2
Gorai.007G362800 Gossypium raimondii HOM05D004349 ORTHO05D005097 3.2e-79 298.5 169 88.2
Prupe.7G086000 Prunus persica HOM05D004349 ORTHO05D005097 3.2e-79 298.5 166 88.0
TWI74G1533 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 5.5e-79 297.7 169 88.2
Dinv25025 Davidia involucrata HOM05D004349 ORTHO05D005097 9.4e-79 297.0 168 88.1
Manes.08G039900 Manihot esculenta HOM05D004349 ORTHO05D005097 1.6e-78 296.2 169 88.2
Sed0001935 Sechium edule HOM05D004349 ORTHO05D005097 1.6e-78 296.2 169 87.6
Solyc04g081430.3 Solanum lycopersicum HOM05D004349 ORTHO05D005097 1.6e-78 296.2 169 87.0
Sopen04g035040 Solanum pennellii HOM05D004349 ORTHO05D005097 1.6e-78 296.2 169 87.0
MELO3C009592.2 Cucumis melo HOM05D004349 ORTHO05D005097 2.1e-78 295.8 169 87.0
Sed0019694 Sechium edule HOM05D004349 ORTHO05D005097 4.6e-78 294.7 169 87.6
CANSAT54G2032 Cannabis sativa HOM05D004349 ORTHO05D005097 6.1e-78 294.3 169 87.0
ClCG10G017820 Citrullus lanatus HOM05D004349 ORTHO05D005097 7.9e-78 293.9 169 85.8
FvH4_6g21430 Fragaria vesca HOM05D004349 ORTHO05D005097 7.9e-78 293.9 166 86.7
FAN05G0412 Fragaria x ananassa HOM05D004349 ORTHO05D005097 7.9e-78 293.9 166 86.7
FAN05G3233 Fragaria x ananassa HOM05D004349 ORTHO05D005097 7.9e-78 293.9 166 86.7
RcHm_v2.0_Chr4g0406251 Rosa chinensis HOM05D004349 ORTHO05D005097 7.9e-78 293.9 166 86.7
Nitab4.5_0001874g0080 Nicotiana tabacum HOM05D004349 ORTHO05D005097 1.0e-77 293.5 169 85.8
Potri.016G062800 Populus trichocarpa HOM05D004349 ORTHO05D005097 1.4e-77 293.1 169 87.0
Actinidia01590 Actinidia chinensis HOM05D004349 ORTHO05D005097 1.8e-77 292.7 168 86.9
FAN02G1450 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.8e-77 292.7 162 88.9
PSO528G0119 Papaver somniferum HOM05D004349 ORTHO05D005097 3.0e-77 292.0 169 85.8
CsaV3_7G005510 Cucumis sativus L. HOM05D004349 ORTHO05D005097 3.9e-77 291.6 169 87.0
LjContig00564g0000037 Lotus japonicus HOM05D004349 ORTHO05D005097 5.1e-77 291.2 169 85.2
Sp6g39510 Schrenkiella parvula HOM05D004349 ORTHO05D005097 5.1e-77 291.2 169 86.4
Thhalv10021663m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 6.7e-77 290.8 169 85.8
Hma1.2p1_0516F.1_g170550 Hydrangea macrophylla HOM05D004349 ORTHO05D005097 8.8e-77 290.4 168 85.7
Peaxi162Scf00463g00127 Petunia axillaris HOM05D004349 ORTHO05D005097 8.8e-77 290.4 169 84.6
Rhsim04G0092200 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.1e-76 290.0 168 85.7
AL6G12510 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 1.5e-76 289.7 169 85.8
Carub.0006s0201 Capsella rubella HOM05D004349 ORTHO05D005097 1.5e-76 289.7 169 85.2
Rhsim04G0092400 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.5e-76 289.7 168 85.7
arahy.Tifrunner.gnm1.ann1.FMT65J Arachis hypogaea HOM05D004349 ORTHO05D005097 2.0e-76 289.3 169 84.6
Cc09_g02100 Coffea canephora HOM05D004349 ORTHO05D005097 2.0e-76 289.3 169 85.2
Phvul.010G156700 Phaseolus vulgaris HOM05D004349 ORTHO05D005097 2.0e-76 289.3 169 84.6
Glyma.07G029300 Glycine max HOM05D004349 ORTHO05D005097 2.5e-76 288.9 169 84.0
Thhalv10014853m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 3.3e-76 288.5 169 85.8
TWI77G0543 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 3.3e-76 288.5 166 87.3
EL10Ac2g02766 Beta vulgaris HOM05D004349 ORTHO05D005097 4.3e-76 288.1 166 83.7
MD14G1049500 Malus domestica HOM05D004349 ORTHO05D005097 4.3e-76 288.1 166 84.3
arahy.Tifrunner.gnm1.ann1.9IE653 Arachis hypogaea HOM05D004349 ORTHO05D005097 7.4e-76 287.3 169 83.4
Migut.L01584 Erythranthe guttata HOM05D004349 ORTHO05D005097 7.4e-76 287.3 169 83.4
PSO170G4263 Papaver somniferum HOM05D004349 ORTHO05D005097 7.4e-76 287.3 169 84.0
ECA240G0294 Erigeron canadensis HOM05D004349 ORTHO05D005097 9.7e-76 287.0 169 84.6
MSTRG.10496 Avicennia marina HOM05D004349 ORTHO05D005097 1.3e-75 286.6 169 84.6
THA.LOC104821832 Tarenaya hassleriana HOM05D004349 ORTHO05D005097 1.3e-75 286.6 169 85.8
AT5G03220 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 2.8e-75 285.4 169 84.0
DCAR_018883 Daucus carota HOM05D004349 ORTHO05D005097 2.8e-75 285.4 182 79.1
Glyma.08G213500 Glycine max HOM05D004349 ORTHO05D005097 2.8e-75 285.4 169 82.8
Ah.13g075520 Amaranthus hybridus HOM05D004349 ORTHO05D005097 3.7e-75 285.0 169 81.7
MD12G1050700 Malus domestica HOM05D004349 ORTHO05D005097 4.8e-75 284.6 166 83.7
AL6G12940 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 6.3e-75 284.3 166 85.5
Medtr6g471120 Medicago truncatula HOM05D004349 ORTHO05D005097 1.1e-74 283.5 169 82.2
PGSC0003DMG401009863 Solanum tuberosum HOM05D004349 ORTHO05D005097 1.8e-74 282.7 186 78.5
TPR.G11586 Trifolium pratense HOM05D004349 ORTHO05D005097 1.8e-74 282.7 169 82.2
AT5G03500 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 2.4e-74 282.3 169 83.4
Medtr2g094720 Medicago truncatula HOM05D004349 ORTHO05D005097 3.1e-74 282.0 169 81.7
Aa31LG1G21860 Aethionema arabicum HOM05D004349 ORTHO05D005097 4.1e-74 281.6 169 82.2
Ca_01401_v3 Cicer arietinum L. HOM05D004349 ORTHO05D005097 4.1e-74 281.6 169 81.1
FAN09G4703 Fragaria x ananassa HOM05D004349 ORTHO05D005097 4.1e-74 281.6 183 78.1
Psat5g280400 Pisum sativum HOM05D004349 ORTHO05D005097 4.1e-74 281.6 169 81.7
FAN14G0676 Fragaria x ananassa HOM05D004349 ORTHO05D005097 5.3e-74 281.2 183 78.1
FAN14G3215 Fragaria x ananassa HOM05D004349 ORTHO05D005097 5.3e-74 281.2 183 78.1
BcaC03g13019 Brassica carinata HOM05D004349 ORTHO05D005097 6.9e-74 280.8 169 84.6
TAR623G1044 Trochodendron aralioides HOM05D004349 ORTHO05D005097 6.9e-74 280.8 169 85.8
Nitab4.5_0000571g0040 Nicotiana tabacum HOM05D004349 ORTHO05D005097 9.1e-74 280.4 192 75.5
BolC2t06089H Brassica oleracea HOM05D004349 ORTHO05D005097 1.5e-73 279.6 169 84.0
CARHR210130 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.5e-73 279.6 169 82.8
CARHR040500 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.6e-73 278.9 169 81.7
Nn2g15821 Nelumbo nucifera HOM05D004349 ORTHO05D005097 2.6e-73 278.9 167 85.0
Hund26707 Selenicereus undatus HOM05D004349 ORTHO05D005097 1.3e-72 276.6 207 70.0
Lj2C360G6 Lonicera japonica HOM05D004349 ORTHO05D005097 2.2e-72 275.8 149 89.3
SGA_v2.0_scaffold21G09532 Striga asiatica HOM05D004349 ORTHO05D005097 3.8e-72 275.0 169 81.1
Sabra06G0151800 Salix brachista HOM05D004349 ORTHO05D005097 1.1e-71 273.5 150 89.3
Thecc.05G180500 Theobroma cacao HOM05D004349 ORTHO05D005097 1.1e-71 273.5 149 90.6
TAR623G0936 Trochodendron aralioides HOM05D004349 ORTHO05D005097 1.4e-71 273.1 149 89.3
ECA248G3305 Erigeron canadensis HOM05D004349 ORTHO05D005097 1.9e-71 272.7 169 81.7
arahy.Tifrunner.gnm1.ann1.2RRL5Q Arachis hypogaea HOM05D004349 ORTHO05D005097 2.5e-71 272.3 197 71.6
TPR.G23269 Trifolium pratense HOM05D004349 ORTHO05D005097 2.5e-71 272.3 169 78.7
Lalb_Chr23g0277751 Lupinus albus HOM05D004349 ORTHO05D005097 3.2e-71 271.9 169 77.5
AUR62015286 Chenopodium quinoa HOM05D004349 ORTHO05D005097 2.1e-70 269.2 149 85.9
HPP92_013495 Vanilla planifolia HOM05D004349 ORTHO05D005097 2.7e-70 268.9 158 86.1
HPP92_026048 Vanilla planifolia HOM05D004349 ORTHO05D005097 6.1e-70 267.7 158 86.1
Eucgr.A02508 Eucalyptus grandis HOM05D004349 ORTHO05D005097 7.9e-70 267.3 149 87.9
SEGI_10501 Sequoiadendron giganteum HOM05D004349 ORTHO05D005097 7.9e-70 267.3 166 76.5
Rhsim10G0130900 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.8e-69 266.2 214 67.3
BraA02t04750Z Brassica rapa HOM05D004349 ORTHO05D005097 5.1e-69 264.6 150 87.3
MBI18_g03872_MAGBIO Magnolia biondii HOM05D004349 ORTHO05D005097 1.1e-68 263.5 165 80.0
Gohir.A11G314900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 1.5e-68 263.1 143 89.5
VMungo0331G0313 Vigna mungo HOM05D004349 ORTHO05D005097 2.0e-68 262.7 148 86.5
Lsat_1_v5_gn_1_58740 Lactuca sativa HOM05D004349 ORTHO05D005097 4.4e-68 261.5 145 88.3
Lalb_Chr19g0125421 Lupinus albus HOM05D004349 ORTHO05D005097 7.4e-68 260.8 169 73.4
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 2.2e-67 259.2 169 77.5
ATR0580G353 Amborella trichopoda HOM05D004349 ORTHO05D005097 2.8e-67 258.8 147 84.4
Os04g0661800 Oryza sativa ssp. japonica HOM05D004349 ORTHO05D005097 4.8e-67 258.1 167 77.8
SHI30021 Sapria himalayana HOM05D004349 ORTHO05D005097 8.2e-67 257.3 161 78.9
Mapoly0052s0099 Marchantia polymorpha HOM05D004349 ORTHO05D005097 5.3e-66 254.6 166 74.1
CDE02G3593 Ceratophyllum demersum HOM05D000001 ORTHO05D000424 7.0e-66 254.2 152 82.2
CSS0044984 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 1.2e-65 253.4 153 83.7
BraA10t45308Z Brassica rapa HOM05D004349 ORTHO05D005097 4.5e-65 251.5 149 83.9
Prupe.6G266300 Prunus persica HOM05D004349 ORTHO05D005097 7.7e-65 250.8 177 74.6
Zm00001eb067450 Zea mays HOM05D004349 ORTHO05D005097 1.3e-64 250.0 167 73.7
vmacro17893 Vaccinium macrocarpon HOM05D004349 ORTHO05D005097 1.7e-64 249.6 239 59.0
Carub.0006s2456 Capsella rubella HOM05D004349 ORTHO05D005097 5.0e-64 248.1 170 78.8
A10p32710 Brassica napus HOM05D004349 ORTHO05D005097 1.6e-62 243.0 149 81.2
Zm00001eb432780 Zea mays HOM05D004349 ORTHO05D005097 1.4e-61 240.0 168 72.0
C02p00910 Brassica napus HOM05D004349 ORTHO05D005097 1.8e-61 239.6 149 81.9
PGR004G2245 Punica granatum HOM05D004349 ORTHO05D005097 1.5e-60 236.5 126 89.7
BcaNung06685 Brassica carinata HOM05D004349 ORTHO05D005097 4.4e-60 235.0 151 79.5
CAN.G311.28 Capsicum annuum HOM05D004349 ORTHO05D005097 3.7e-59 231.9 124 88.7
Prupe.1G181600 Prunus persica HOM05D004349 ORTHO05D005097 4.8e-59 231.5 156 77.6
arahy.Tifrunner.gnm1.ann1.UX8DIM Arachis hypogaea HOM05D004349 ORTHO05D005097 9.1e-58 227.3 169 72.2
BolC9t60086H Brassica oleracea HOM05D004349 ORTHO05D005097 5.9e-57 224.6 167 71.9
Sc13g0002530 Simmondsia chinensis HOM05D004349 ORTHO05D005097 2.2e-56 222.6 123 84.6
AL3G38450 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 3.2e-55 218.8 131 84.7
HanXRQChr01g0024771 Helianthus annuus HOM05D004349 ORTHO05D005097 2.1e-54 216.1 124 90.3
CBR_g46752 Chara braunii HOM05D004349 ORTHO05D005097 1.0e-53 213.8 189 58.7
SMO340G0091 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 1.4e-53 213.4 157 68.8
C09p73550 Brassica napus HOM05D004349 ORTHO05D005097 1.8e-53 213.0 148 77.7
HanXRQChr03g0090511 Helianthus annuus HOM05D004349 ORTHO05D005097 2.6e-52 209.1 124 85.5
Prupe.8G249100 Prunus persica HOM05D004349 ORTHO05D005097 2.6e-52 209.1 166 67.5
Prupe.1G547000 Prunus persica HOM05D004349 ORTHO05D005097 7.5e-52 207.6 121 86.0
Prupe.1G300700 Prunus persica HOM05D004349 ORTHO05D005097 9.7e-52 207.2 121 85.1
Prupe.7G024200 Prunus persica HOM05D004349 ORTHO05D005097 9.7e-52 207.2 121 85.1
Prupe.1G035300 Prunus persica HOM05D004349 ORTHO05D005097 1.7e-51 206.5 119 87.4
Prupe.3G021700 Prunus persica HOM05D004349 ORTHO05D005097 2.2e-51 206.1 121 84.3
Dinv24030 Davidia involucrata HOM05D004349 ORTHO05D005097 4.8e-51 204.9 131 82.4
CSS0033717 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 3.5e-49 198.7 141 73.0
ATR0564G039 Amborella trichopoda HOM05D004349 ORTHO05D005097 1.1e-47 193.7 144 74.3
SMO358G0681 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 3.2e-47 192.2 136 69.9
RcHm_v2.0_Chr3g0478001 Rosa chinensis HOM05D004349 ORTHO05D005097 5.9e-41 171.4 106 82.1
Oeu057599.1 Olea europaea HOM05D004349 ORTHO05D005097 1.9e-39 166.4 90 83.3
Prupe.2G085900 Prunus persica HOM05D004349 ORTHO05D005097 3.3e-39 165.6 90 88.9
FAN05G0350 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.4e-37 160.2 94 89.4
Sabra16G0064800 Salix brachista HOM05D004349 ORTHO05D005097 1.2e-33 147.1 82 92.7
Pp3c5_20850 Physcomitrium patens HOM05D004349 ORTHO05D005097 5.9e-33 144.8 112 67.0
AagrBONN_evm.TU.Sc2ySwM_117.2767 Anthoceros agrestis HOM05D004349 ORTHO05D005097 3.1e-29 132.5 98 69.4
Rhsim04G0093300 Rhododendron simsii HOM05D004349 ORTHO05D005097 8.9e-29 131.0 73 93.2
AagrBONN_evm.TU.Sc2ySwM_362.1623 Anthoceros agrestis HOM05D004349 ORTHO05D005097 1.5e-28 130.2 93 71.0
CARHR099790 Cardamine hirsuta HOM05D004349 ORTHO05D005097 4.1e-26 122.1 82 74.4
RcHm_v2.0_Chr3g0478061 Rosa chinensis HOM05D004349 ORTHO05D005097 2.3e-24 116.3 103 61.2
AL6G12900 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 2.1e-22 109.8 78 69.2
CARHR251030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.8e-22 109.4 74 73.0
CSS0042444 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 1.1e-21 107.5 75 72.0
CARHR218030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.9e-19 99.4 63 77.8
MCO10G402 Micromonas commoda HOM05D004349 ORTHO05D005097 8.3e-19 97.8 153 37.9
CARHR258920 Cardamine hirsuta HOM05D004349 ORTHO05D005097 7.0e-18 94.7 65 75.4
PRCOL_00002553 Prasinoderma coloniale HOM05D004349 ORTHO05D005097 9.2e-18 94.4 130 40.8
RcHm_v2.0_Chr3g0478211 Rosa chinensis HOM05D004349 ORTHO05D005097 7.3e-15 84.7 49 87.8
RcHm_v2.0_Chr3g0478341 Rosa chinensis HOM05D004349 ORTHO05D005097 7.3e-15 84.7 49 87.8
RcHm_v2.0_Chr3g0478621 Rosa chinensis HOM05D004349 ORTHO05D005097 8.1e-14 81.3 108 52.8
Rhsim04G0093100 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.8e-13 80.1 44 79.5
Cre01.g062902 Chlamydomonas reinhardtii HOM05D004349 ORTHO05D005097 1.3e-11 73.9 165 34.5
FAN04G2473 Fragaria x ananassa HOM05D004349 ORTHO05D005097 5.4e-10 68.6 38 76.3


User provided reference genes

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