Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc84.94 Carica papaya HOM05D006389 ORTHO05D007863 0.0e+00 1200.3 580 100.0
COL.COLO4_24825 Corchorus olitorius HOM05D006389 ORTHO05D007863 4.5e-173 612.1 484 62.0
QL01p005900 Quercus lobata HOM05D006389 ORTHO05D007863 3.2e-171 605.9 484 60.7
CiPaw.14G122900 Carya illinoinensis HOM05D006389 ORTHO05D007863 3.9e-169 599.0 497 58.6
Cfa005620 Carpinus fangiana HOM05D006389 ORTHO05D007863 2.0e-168 596.7 485 60.2
Manes.06G168100 Manihot esculenta HOM05D006389 ORTHO05D007863 4.8e-167 592.0 484 59.9
Atru.chr3.2543 Acer truncatum HOM05D006389 ORTHO05D007863 1.6e-165 587.0 484 61.2
Gorai.006G129600 Gossypium raimondii HOM05D006389 ORTHO05D007863 5.9e-165 585.1 485 59.2
Gohir.A09G115200 Gossypium hirsutum HOM05D006389 ORTHO05D007863 7.7e-165 584.7 485 59.2
Gohir.D09G111800 Gossypium hirsutum HOM05D006389 ORTHO05D007863 1.7e-164 583.6 485 59.2
Prupe.6G021400 Prunus persica HOM05D006389 ORTHO05D007863 2.9e-164 582.8 484 59.3
MD11G1027100 Malus domestica HOM05D006389 ORTHO05D007863 1.5e-163 580.5 484 59.1
Potri.001G016800 Populus trichocarpa HOM05D006389 ORTHO05D007863 8.8e-161 571.2 497 59.4
RcHm_v2.0_Chr5g0077431 Rosa chinensis HOM05D006389 ORTHO05D007863 9.7e-160 567.8 485 57.7
TAR623G0704 Trochodendron aralioides HOM05D006389 ORTHO05D007863 4.8e-159 565.5 492 56.9
PSO339G5502 Papaver somniferum HOM05D006389 ORTHO05D007863 3.1e-158 562.8 496 56.5
Glyma.11G130800 Glycine max HOM05D006389 ORTHO05D007863 2.2e-156 556.6 488 57.0
FvH4_3g43320 Fragaria vesca HOM05D006389 ORTHO05D007863 5.0e-156 555.4 487 57.1
GSVIVG01025317001 Vitis vinifera HOM05D006389 ORTHO05D007863 1.5e-155 553.9 494 55.7
FAN11G1995 Fragaria x ananassa HOM05D006389 ORTHO05D007863 2.5e-155 553.1 487 56.7
CsaV3_1G042620 Cucumis sativus L. HOM05D006389 ORTHO05D007863 3.6e-154 549.3 486 56.2
ClCG03G013410 Citrullus lanatus HOM05D006389 ORTHO05D007863 8.8e-153 544.7 488 55.7
TWI34G0575 Tripterygium wilfordii HOM05D006389 ORTHO05D007863 8.8e-153 544.7 487 56.7
Sed0000566 Sechium edule HOM05D006389 ORTHO05D007863 1.1e-150 537.7 495 54.7
arahy.Tifrunner.gnm1.ann1.VM78M6 Arachis hypogaea HOM05D006389 ORTHO05D007863 1.4e-150 537.3 485 55.9
arahy.Tifrunner.gnm1.ann1.XMKE9J Arachis hypogaea HOM05D006389 ORTHO05D007863 9.1e-150 534.6 485 55.9
Phvul.011G057100 Phaseolus vulgaris HOM05D006389 ORTHO05D007863 2.7e-149 533.1 484 55.6
Nn7g36087 Nelumbo nucifera HOM05D006389 ORTHO05D007863 2.3e-148 530.0 484 53.3
FAN16G0020 Fragaria x ananassa HOM05D006389 ORTHO05D007863 8.6e-148 528.1 512 53.5
Lalb_Chr03g0026221 Lupinus albus HOM05D006389 ORTHO05D007863 9.5e-147 524.6 490 54.5
THA.LOC104799096 Tarenaya hassleriana HOM05D006389 ORTHO05D007863 1.0e-145 521.2 488 56.1
AUR62019259 Chenopodium quinoa HOM05D006389 ORTHO05D007863 2.3e-145 520.0 494 52.8
VMungo1127G1170 Vigna mungo HOM05D006389 ORTHO05D007863 1.2e-144 517.7 539 50.3
Oeu014062.1 Olea europaea HOM05D006389 ORTHO05D007863 6.3e-143 511.9 486 54.1
Migut.N02297 Erythranthe guttata HOM05D006389 ORTHO05D007863 2.7e-141 506.5 488 51.4
DCAR_023759 Daucus carota HOM05D006389 ORTHO05D007863 5.9e-141 505.4 484 50.6
Nitab4.5_0003250g0030 Nicotiana tabacum HOM05D006389 ORTHO05D007863 2.9e-140 503.1 480 51.9
Cc01_g04330 Coffea canephora HOM05D006389 ORTHO05D007863 3.9e-140 502.7 493 52.1
PGR102G3332 Punica granatum HOM05D006389 ORTHO05D007863 1.9e-139 500.4 498 51.2
Actinidia16300 Actinidia chinensis HOM05D006389 ORTHO05D007863 5.6e-139 498.8 485 54.0
Sabra01G0011800 Salix brachista HOM05D006389 ORTHO05D007863 2.1e-138 496.9 549 49.4
Sopen11g021140 Solanum pennellii HOM05D006389 ORTHO05D007863 2.1e-138 496.9 487 50.7
Aqoxy1G00204 Aquilegia oxysepala HOM05D006389 ORTHO05D007863 8.9e-137 491.5 484 52.5
Hund22074 Selenicereus undatus HOM05D006389 ORTHO05D007863 2.0e-136 490.3 500 50.4
CAN.G409.1 Capsicum annuum HOM05D006389 ORTHO05D007863 2.2e-135 486.9 485 49.1
Thecc.09G225900 Theobroma cacao HOM05D006389 ORTHO05D007863 1.9e-134 483.8 413 59.6
Carub.0006s1110 Capsella rubella HOM05D006389 ORTHO05D007863 4.1e-134 482.6 501 51.7
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 1.3e-132 477.6 490 52.4
C03p06650 Brassica napus HOM05D006389 ORTHO05D007863 1.3e-132 477.6 509 50.9
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 1.7e-132 477.2 499 51.1
Sc16g0011670 Simmondsia chinensis HOM05D006389 ORTHO05D007863 3.9e-132 476.1 359 62.1
AT5G12920 Arabidopsis thaliana HOM05D006389 ORTHO05D007863 2.5e-131 473.4 490 51.6
A03p05690 Brassica napus HOM05D006389 ORTHO05D007863 2.5e-131 473.4 506 50.4
HanXRQChr13g0407081 Helianthus annuus HOM05D006389 ORTHO05D007863 5.6e-131 472.2 484 52.9
Medtr4g066000 Medicago truncatula HOM05D006389 ORTHO05D007863 7.3e-131 471.9 487 50.3
AL6G23480 Arabidopsis lyrata HOM05D006389 ORTHO05D007863 1.2e-130 471.1 513 49.3
FAN25G0313 Fragaria x ananassa HOM05D006389 ORTHO05D007863 2.8e-130 469.9 510 49.6
CARHR200530 Cardamine hirsuta HOM05D006389 ORTHO05D007863 4.7e-130 469.2 503 49.9
vmacro04176 Vaccinium macrocarpon HOM05D006389 ORTHO05D007863 4.7e-130 469.2 374 60.7
Lsat_1_v5_gn_2_101040 Lactuca sativa HOM05D006389 ORTHO05D007863 4.0e-129 466.1 483 51.3
Haze_10646 Corylus avellana HOM05D006389 ORTHO05D007863 1.5e-128 464.2 606 44.2
Sp6g31040 Schrenkiella parvula HOM05D006389 ORTHO05D007863 2.0e-128 463.8 503 49.5
Psat0s3083g0200 Pisum sativum HOM05D006389 ORTHO05D007863 4.9e-127 459.1 486 49.2
Dinv36295 Davidia involucrata HOM05D006389 ORTHO05D007863 1.9e-126 457.2 402 57.2
Lj3g0001596 Lotus japonicus HOM05D006389 ORTHO05D007863 1.9e-126 457.2 484 49.6
BolC3t13171H Brassica oleracea HOM05D006389 ORTHO05D007863 9.2e-126 454.9 547 47.3
BraA03t09908Z Brassica rapa HOM05D006389 ORTHO05D007863 1.3e-124 451.1 550 46.4
COL.COLO4_26371 Corchorus olitorius HOM05D006389 ORTHO05D007863 2.3e-124 450.3 426 54.9
ECA238G3473 Erigeron canadensis HOM05D006389 ORTHO05D007863 3.0e-124 449.9 484 50.8
FAN21G1265 Fragaria x ananassa HOM05D002542 ORTHO05D005078 2.5e-123 446.8 359 60.4
Thhalv10015483m.g Eutrema salsugineum HOM05D006389 ORTHO05D007863 3.6e-122 443.0 477 49.5
SGA_v2.0_scaffold3G01545 Striga asiatica HOM05D006389 ORTHO05D007863 1.4e-121 441.0 501 46.7
HanXRQChr14g0453091 Helianthus annuus HOM05D006389 ORTHO05D007863 1.8e-121 440.7 525 47.4
HanXRQChr13g0407091 Helianthus annuus HOM05D006389 ORTHO05D007863 2.6e-120 436.8 485 49.7
SalBow4G3167 Salvia bowleyana HOM05D006389 ORTHO05D007863 1.7e-119 434.1 530 44.5
Ah.02g115890 Amaranthus hybridus HOM05D006389 ORTHO05D007863 1.9e-118 430.6 487 46.0
MELO3C015208.2 Cucumis melo HOM05D006389 ORTHO05D007863 1.2e-114 417.9 466 47.2
TPR.G13666 Trifolium pratense HOM05D006389 ORTHO05D007863 1.6e-114 417.5 490 46.5
Rhsim13G0224700 Rhododendron simsii HOM05D006389 ORTHO05D007863 2.1e-114 417.2 431 50.3
CDE06G1860 Ceratophyllum demersum HOM05D006389 ORTHO05D007863 1.5e-112 411.0 325 57.8
AUR62000087 Chenopodium quinoa HOM05D006389 ORTHO05D007863 4.4e-112 409.5 486 47.1
Zm00001eb245730 Zea mays HOM05D006389 ORTHO05D007863 1.0e-108 398.3 499 44.7
SalBow4G2322 Salvia bowleyana HOM05D006389 ORTHO05D007863 2.8e-106 390.2 530 42.1
ATR0605G326 Amborella trichopoda HOM05D006389 ORTHO05D007863 2.4e-105 387.1 509 41.8
AUR62043581 Chenopodium quinoa HOM05D006389 ORTHO05D007863 5.3e-105 386.0 480 44.6
Os02g0591600 Oryza sativa ssp. japonica HOM05D006389 ORTHO05D007863 4.3e-99 366.3 490 41.6
unitig_699.g19125 Utricularia gibba HOM05D006389 ORTHO05D007863 8.1e-98 362.1 315 54.0
HanXRQChr14g0455041 Helianthus annuus HOM05D006389 ORTHO05D007863 4.0e-97 359.8 298 58.7
Hma1.2p1_0728F.1_g209350 Hydrangea macrophylla HOM05D006389 ORTHO05D007863 2.3e-92 344.0 255 62.0
HPP92_018945 Vanilla planifolia HOM05D006389 ORTHO05D007863 2.3e-92 344.0 486 38.9
Eucgr.B03666 Eucalyptus grandis HOM05D006389 ORTHO05D007863 5.8e-80 302.8 273 51.6
PSO384G2577 Papaver somniferum HOM05D006389 ORTHO05D007863 1.2e-77 295.0 300 50.0
Pp3c6_27180 Physcomitrium patens HOM05D006389 ORTHO05D007863 1.2e-77 295.0 491 35.0
Nitab4.5_0000175g0150 Nicotiana tabacum HOM05D006389 ORTHO05D007863 3.4e-72 276.9 315 45.7
Solyc11g045510.3 Solanum lycopersicum HOM05D006389 ORTHO05D007863 1.7e-71 274.6 318 45.0
Ca_20580_v3 Cicer arietinum L. HOM05D006389 ORTHO05D007863 2.5e-70 270.8 355 43.1
Mapoly0014s0037 Marchantia polymorpha HOM05D006389 ORTHO05D007863 2.3e-68 264.2 564 33.0
CSS0004435 Camellia sinensis var. sinensis HOM05D006389 ORTHO05D007863 3.3e-67 260.4 315 47.9
MSTRG.17573 Avicennia marina HOM05D006389 ORTHO05D007863 4.8e-66 256.5 192 60.4
MBI01_g14331_MAGBIO Magnolia biondii HOM05D006389 ORTHO05D007863 4.2e-62 243.4 157 68.2
SHI30505 Sapria himalayana HOM05D006389 ORTHO05D007863 3.3e-59 233.8 183 63.9
Ciclev10018279m.g Citrus clementina HOM05D006389 ORTHO05D007863 1.7e-55 221.5 156 64.1
Peaxi162Scf00559g00114 Petunia axillaris HOM05D006389 ORTHO05D007863 1.7e-55 221.5 190 52.6
Ciclev10016567m.g Citrus clementina HOM05D006389 ORTHO05D007863 3.2e-54 217.2 247 48.2
AagrBONN_evm.TU.Sc2ySwM_228.3166 Anthoceros agrestis HOM05D006389 ORTHO05D007863 4.4e-51 206.8 361 34.9
Hma1.2p1_0728F.1_g209340 Hydrangea macrophylla HOM05D006389 ORTHO05D007863 1.6e-45 188.3 215 49.8
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 8.5e-39 166.0 352 33.8
HanXRQChr14g0450961 Helianthus annuus HOM05D006389 ORTHO05D007863 2.7e-37 161.0 191 44.0
Lj1A361T11 Lonicera japonica HOM05D006389 ORTHO05D007863 3.4e-35 154.1 189 46.6
Nitab4.5_0000175g0160 Nicotiana tabacum HOM05D006389 ORTHO05D007863 1.9e-30 138.3 121 51.2
SHI30507 Sapria himalayana HOM05D006389 ORTHO05D007863 6.6e-23 113.2 91 58.2
Peaxi162Scf00185g00310 Petunia axillaris HOM05D006389 ORTHO05D007863 3.6e-21 107.5 148 38.5
CSS0015492 Camellia sinensis var. sinensis HOM05D006389 ORTHO05D007863 2.0e-19 101.7 72 62.5
MCO05G648 Micromonas commoda HOM05D006389 ORTHO05D007863 1.1e-17 95.9 348 25.9
HanXRQChr13g0389161 Helianthus annuus HOM05D006389 ORTHO05D007863 1.4e-17 95.5 53 79.2
arahy.Tifrunner.gnm1.ann1.RII35Q Arachis hypogaea HOM05D006389 ORTHO05D007863 1.7e-15 88.6 284 27.1
Psat4g014880 Pisum sativum HOM05D006389 ORTHO05D007863 3.6e-13 80.9 140 35.0
vmacro04177 Vaccinium macrocarpon HOM05D006389 ORTHO05D007863 9.8e-11 72.8 71 50.7
Atru.chr13.1919 Acer truncatum HOM05D009248 ORTHO05D011411 1.7e-10 72.0 106 46.2
arahy.Tifrunner.gnm1.ann1.RU7JNP Arachis hypogaea HOM05D009248 ORTHO05D011411 2.2e-10 71.6 88 46.6
SEGI_11371 Sequoiadendron giganteum HOM05D006389 ORTHO05D007863 1.1e-09 69.3 93 43.0
Thecc.05G224900 Theobroma cacao HOM05D009248 ORTHO05D011411 5.4e-09 67.0 82 43.9
Cpa.g.sc55.60 Carica papaya HOM05D009248 ORTHO05D011411 7.1e-09 66.6 88 48.9
Ciclev10003105m.g Citrus clementina HOM05D009248 ORTHO05D011411 7.1e-09 66.6 88 45.5
Eucgr.H04911 Eucalyptus grandis HOM05D009248 ORTHO05D011411 7.8e-08 63.2 90 42.2
Ciclev10030158m.g Citrus clementina HOM05D009248 ORTHO05D011411 1.7e-07 62.0 62 51.6
SEGI_20259 Sequoiadendron giganteum HOM05D006389 ORTHO05D007863 3.0e-07 61.2 58 46.6
MBI01_g14332_MAGBIO Magnolia biondii HOM05D006389 ORTHO05D007863 1.1e-06 59.3 54 50.0
Dinv36294 Davidia involucrata HOM05D009248 ORTHO05D011411 7.3e-06 56.6 56 55.4


User provided reference genes

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