Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc8.42 Carica papaya HOM05D005229 ORTHO05D006378 2.0e-118 429.1 219 100.0
COL.COLO4_07353 Corchorus olitorius HOM05D005229 ORTHO05D006378 2.8e-107 392.1 220 90.0
Thecc.01G207800 Theobroma cacao HOM05D005229 ORTHO05D006378 5.2e-106 387.9 219 89.0
Ciclev10016637m.g Citrus clementina HOM05D005229 ORTHO05D006378 8.9e-106 387.1 219 87.2
Sabra14G0134400 Salix brachista HOM05D005229 ORTHO05D006378 1.5e-105 386.3 219 90.4
Potri.002G239700 Populus trichocarpa HOM05D005229 ORTHO05D006378 3.4e-105 385.2 219 89.0
Nn1g09761 Nelumbo nucifera HOM05D005229 ORTHO05D006378 3.7e-104 381.7 217 87.6
Potri.014G175600 Populus trichocarpa HOM05D005229 ORTHO05D006378 2.4e-103 379.0 219 88.6
Manes.12G055600 Manihot esculenta HOM05D005229 ORTHO05D006378 3.2e-103 378.6 216 88.4
QL01p048658 Quercus lobata HOM05D005229 ORTHO05D006378 9.2e-103 377.1 216 86.6
Gohir.D07G168100 Gossypium hirsutum HOM05D005229 ORTHO05D006378 1.6e-102 376.3 220 87.3
Sabra02G0182500 Salix brachista HOM05D005229 ORTHO05D006378 1.6e-102 376.3 219 87.2
TAR365G0963 Trochodendron aralioides HOM05D005229 ORTHO05D006378 1.6e-102 376.3 217 85.7
Haze_04550 Corylus avellana HOM05D005229 ORTHO05D006378 2.1e-102 375.9 217 86.6
Gohir.A07G160500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 2.1e-102 375.9 220 87.3
Gohir.A07G089500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 2.7e-102 375.6 218 87.2
Rhsim01G0247800 Rhododendron simsii HOM05D005229 ORTHO05D006378 2.7e-102 375.6 221 83.7
Atru.chr6.3527 Acer truncatum HOM05D005229 ORTHO05D006378 3.5e-102 375.2 220 85.9
Cfa006268 Carpinus fangiana HOM05D005229 ORTHO05D006378 3.5e-102 375.2 217 86.2
DCAR_018610 Daucus carota HOM05D005229 ORTHO05D006378 4.6e-102 374.8 219 85.4
SGA_v2.0_scaffold29G12061 Striga asiatica HOM05D005229 ORTHO05D006378 4.6e-102 374.8 219 84.5
Gorai.001G101200 Gossypium raimondii HOM05D005229 ORTHO05D006378 6.0e-102 374.4 220 85.9
SalBow3G3798 Salvia bowleyana HOM05D005229 ORTHO05D006378 1.0e-101 373.6 220 85.5
THA.LOC104808816 Tarenaya hassleriana HOM05D005229 ORTHO05D006378 1.3e-101 373.2 220 85.9
PGR083G1330 Punica granatum HOM05D005229 ORTHO05D006378 1.7e-101 372.9 221 84.2
ECA236G3288 Erigeron canadensis HOM05D005229 ORTHO05D006378 2.3e-101 372.5 219 84.5
FAN05G0704 Fragaria x ananassa HOM05D005229 ORTHO05D006378 2.3e-101 372.5 217 85.3
Oeu025298.1 Olea europaea HOM05D005229 ORTHO05D006378 2.3e-101 372.5 219 85.4
RcHm_v2.0_Chr3g0447921 Rosa chinensis HOM05D005229 ORTHO05D006378 2.3e-101 372.5 217 84.8
HanXRQChr12g0363961 Helianthus annuus HOM05D005229 ORTHO05D006378 3.0e-101 372.1 219 84.9
Sp7g09420 Schrenkiella parvula HOM05D005229 ORTHO05D006378 3.0e-101 372.1 220 85.5
Gorai.N002100 Gossypium raimondii HOM05D005229 ORTHO05D006378 3.9e-101 371.7 220 87.7
CAN.G874.38 Capsicum annuum HOM05D005229 ORTHO05D006378 6.6e-101 370.9 221 84.6
Actinidia34531 Actinidia chinensis HOM05D005229 ORTHO05D006378 8.6e-101 370.5 221 87.3
MSTRG.17960 Avicennia marina HOM05D005229 ORTHO05D006378 8.6e-101 370.5 219 84.0
CAN.G874.39 Capsicum annuum HOM05D005229 ORTHO05D006378 8.6e-101 370.5 221 84.6
Thhalv10026195m.g Eutrema salsugineum HOM05D005229 ORTHO05D006378 1.5e-100 369.8 220 84.5
FAN02G4095 Fragaria x ananassa HOM05D005229 ORTHO05D006378 1.5e-100 369.8 217 84.8
Gohir.D07G094300 Gossypium hirsutum HOM05D005229 ORTHO05D006378 1.5e-100 369.8 220 85.5
Oeu013526.1 Olea europaea HOM05D005229 ORTHO05D006378 1.5e-100 369.8 219 84.5
Peaxi162Scf00841g00210 Petunia axillaris HOM05D005229 ORTHO05D006378 1.5e-100 369.8 220 84.1
BcaB04g17739 Brassica carinata HOM05D005229 ORTHO05D006378 2.5e-100 369.0 220 84.1
Duzib138G0242 Durio zibethinus HOM05D005229 ORTHO05D006378 2.5e-100 369.0 220 85.5
Eucgr.K02362 Eucalyptus grandis HOM05D005229 ORTHO05D006378 4.3e-100 368.2 230 80.9
Solyc06g082940.3 Solanum lycopersicum HOM05D005229 ORTHO05D006378 5.6e-100 367.9 221 83.3
TWI18G1321 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 5.6e-100 367.9 217 84.8
vmacro14690 Vaccinium macrocarpon HOM05D005229 ORTHO05D006378 7.3e-100 367.5 220 82.3
MSTRG.12743 Avicennia marina HOM05D005229 ORTHO05D006378 1.2e-99 366.7 219 83.6
Sopen06g034330 Solanum pennellii HOM05D005229 ORTHO05D006378 1.2e-99 366.7 221 82.8
PGSC0003DMG400027672 Solanum tuberosum HOM05D005229 ORTHO05D006378 1.2e-99 366.7 221 83.7
Aa31LG9G5690 Aethionema arabicum HOM05D005229 ORTHO05D006378 1.6e-99 366.3 220 83.2
CiPaw.07G079800 Carya illinoinensis HOM05D005229 ORTHO05D006378 1.6e-99 366.3 218 83.9
ClCG11G010740 Citrullus lanatus HOM05D005229 ORTHO05D006378 1.6e-99 366.3 219 84.0
MELO3C008731.2 Cucumis melo HOM05D005229 ORTHO05D006378 1.6e-99 366.3 219 84.0
DCAR_012704 Daucus carota HOM05D005229 ORTHO05D006378 1.6e-99 366.3 218 83.0
Cc01_g15890 Coffea canephora HOM05D005229 ORTHO05D006378 2.1e-99 365.9 217 82.5
FvH4_6g00530 Fragaria vesca HOM05D005229 ORTHO05D006378 2.1e-99 365.9 217 83.4
FAN09G4314 Fragaria x ananassa HOM05D005229 ORTHO05D006378 2.1e-99 365.9 217 83.4
C08p09050 Brassica napus HOM05D005229 ORTHO05D006378 2.8e-99 365.5 220 83.2
BcaC07g37428 Brassica carinata HOM05D005229 ORTHO05D006378 3.6e-99 365.2 220 82.7
CsaV3_2G009680 Cucumis sativus L. HOM05D005229 ORTHO05D006378 3.6e-99 365.2 219 84.0
Lsat_1_v5_gn_8_98481 Lactuca sativa HOM05D005229 ORTHO05D006378 3.6e-99 365.2 219 82.6
AL9U11740 Arabidopsis lyrata HOM05D005229 ORTHO05D006378 4.7e-99 364.8 220 83.6
BcaC02g09463 Brassica carinata HOM05D005229 ORTHO05D006378 4.7e-99 364.8 220 83.6
A08p07360 Brassica napus HOM05D005229 ORTHO05D006378 4.7e-99 364.8 220 82.7
C04p43050 Brassica napus HOM05D005229 ORTHO05D006378 4.7e-99 364.8 220 83.6
BolC4t25883H Brassica oleracea HOM05D005229 ORTHO05D006378 4.7e-99 364.8 220 83.6
BraA08t32752Z Brassica rapa HOM05D005229 ORTHO05D006378 4.7e-99 364.8 220 82.7
CARHR218150 Cardamine hirsuta HOM05D005229 ORTHO05D006378 4.7e-99 364.8 220 83.2
PGSC0003DMG400027671 Solanum tuberosum HOM05D005229 ORTHO05D006378 4.7e-99 364.8 221 83.3
AT4G12800 Arabidopsis thaliana HOM05D005229 ORTHO05D006378 6.2e-99 364.4 220 83.2
TWI36G1337 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 6.2e-99 364.4 219 84.0
unitig_60.g25573 Utricularia gibba HOM05D005229 ORTHO05D006378 6.2e-99 364.4 219 83.1
Migut.D00776 Erythranthe guttata HOM05D005229 ORTHO05D006378 8.1e-99 364.0 216 83.3
FAN14G1738 Fragaria x ananassa HOM05D005229 ORTHO05D006378 8.1e-99 364.0 217 82.9
Prupe.6G361000 Prunus persica HOM05D005229 ORTHO05D006378 8.1e-99 364.0 218 83.5
MBI07_g06134_MAGBIO Magnolia biondii HOM05D005229 ORTHO05D006378 1.1e-98 363.6 217 84.3
CDE06G2797 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 1.4e-98 363.2 218 83.5
Sopen06g034340 Solanum pennellii HOM05D005229 ORTHO05D006378 1.4e-98 363.2 221 82.8
A04p09140 Brassica napus HOM05D005229 ORTHO05D006378 2.3e-98 362.5 220 83.2
BolC8t47751H Brassica oleracea HOM05D005229 ORTHO05D006378 2.3e-98 362.5 220 82.3
Carub.0007s3001 Capsella rubella HOM05D005229 ORTHO05D006378 2.3e-98 362.5 220 82.3
Solyc06g082950.4 Solanum lycopersicum HOM05D005229 ORTHO05D006378 6.8e-98 360.9 221 81.9
Glyma.09G250800 Glycine max HOM05D005229 ORTHO05D006378 8.9e-98 360.5 218 84.4
Glyma.18G241700 Glycine max HOM05D005229 ORTHO05D006378 8.9e-98 360.5 218 83.9
BcaB03g16154 Brassica carinata HOM05D005229 ORTHO05D006378 5.8e-97 357.8 220 81.8
AUR62006659 Chenopodium quinoa HOM05D005229 ORTHO05D006378 7.6e-97 357.5 220 82.3
Thecc.05G199500 Theobroma cacao HOM05D005229 ORTHO05D006378 7.6e-97 357.5 217 82.5
Aqoxy2G04070 Aquilegia oxysepala HOM05D005229 ORTHO05D006378 9.9e-97 357.1 219 82.2
AUR62000314 Chenopodium quinoa HOM05D005229 ORTHO05D006378 1.3e-96 356.7 220 82.7
CSS0044510 Camellia sinensis var. sinensis HOM05D005229 ORTHO05D006378 1.7e-96 356.3 225 81.8
unitig_0.g420 Utricularia gibba HOM05D005229 ORTHO05D006378 1.7e-96 356.3 220 82.3
arahy.Tifrunner.gnm1.ann1.MF538D Arachis hypogaea HOM05D005229 ORTHO05D006378 4.9e-96 354.8 218 82.1
VMungo1383G0609 Vigna mungo HOM05D005229 ORTHO05D006378 8.4e-96 354.0 220 82.3
Sed0023204 Sechium edule HOM05D005229 ORTHO05D006378 1.4e-95 353.2 219 80.4
arahy.Tifrunner.gnm1.ann1.18YQBF Arachis hypogaea HOM05D005229 ORTHO05D006378 1.9e-95 352.8 218 81.7
Sed0003052 Sechium edule HOM05D005229 ORTHO05D006378 1.9e-95 352.8 219 81.3
HanXRQChr08g0231801 Helianthus annuus HOM05D005229 ORTHO05D006378 4.1e-95 351.7 214 83.6
Lj2P1112T20 Lonicera japonica HOM05D005229 ORTHO05D006378 4.1e-95 351.7 215 83.3
Phvul.008G054400 Phaseolus vulgaris HOM05D005229 ORTHO05D006378 4.1e-95 351.7 218 81.7
Lj1g0022024 Lotus japonicus HOM05D005229 ORTHO05D006378 5.4e-95 351.3 218 81.2
Lalb_Chr19g0127611 Lupinus albus HOM05D005229 ORTHO05D006378 1.6e-94 349.7 218 81.2
MD04G1244400 Malus domestica HOM05D005229 ORTHO05D006378 2.1e-94 349.4 219 79.9
PGR044G1943 Punica granatum HOM05D005229 ORTHO05D006378 2.7e-94 349.0 220 81.4
MD12G1260300 Malus domestica HOM05D005229 ORTHO05D006378 4.6e-94 348.2 219 79.5
Ca_07979_v3 Cicer arietinum L. HOM05D005229 ORTHO05D006378 1.0e-93 347.1 218 80.7
Psat3g138440 Pisum sativum HOM05D005229 ORTHO05D006378 1.0e-93 347.1 218 79.8
GSVIVG01019114001 Vitis vinifera HOM05D005229 ORTHO05D006378 1.0e-93 347.1 221 79.6
Medtr7g079900 Medicago truncatula HOM05D005229 ORTHO05D006378 1.7e-93 346.3 218 79.8
EL10Ac4g09972 Beta vulgaris HOM05D005229 ORTHO05D006378 8.6e-93 344.0 220 79.1
ECA247G0242 Erigeron canadensis HOM05D005229 ORTHO05D006378 1.5e-92 343.2 215 81.9
Lalb_Chr01g0020361 Lupinus albus HOM05D005229 ORTHO05D006378 4.3e-92 341.7 218 80.3
Lsat_1_v5_gn_9_16861 Lactuca sativa HOM05D005229 ORTHO05D006378 5.6e-92 341.3 214 79.9
CANSAT54G2118 Cannabis sativa HOM05D005229 ORTHO05D006378 9.6e-92 340.5 219 80.8
PSO017G0175 Papaver somniferum HOM05D005229 ORTHO05D006378 2.1e-91 339.3 220 79.1
PSO675G2116 Papaver somniferum HOM05D005229 ORTHO05D006378 2.1e-91 339.3 220 79.1
TPR.G30351 Trifolium pratense HOM05D005229 ORTHO05D006378 2.1e-91 339.3 219 79.0
Hund07343 Selenicereus undatus HOM05D005229 ORTHO05D006378 6.2e-91 337.8 221 76.5
Ah.04g158950 Amaranthus hybridus HOM05D005229 ORTHO05D006378 1.2e-89 333.6 219 76.3
Os12g0420400 Oryza sativa ssp. japonica HOM05D005229 ORTHO05D006378 1.6e-86 323.2 220 78.2
CDE06G0966 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 7.3e-84 314.3 193 80.8
SEGI_02964 Sequoiadendron giganteum HOM05D005229 ORTHO05D006378 6.9e-82 307.8 176 84.7
Zm00001eb123000 Zea mays HOM05D005229 ORTHO05D006378 6.9e-82 307.8 221 74.7
ATR1147G045 Amborella trichopoda HOM05D005229 ORTHO05D006378 2.0e-81 306.2 226 73.0
Lj1P104T52 Lonicera japonica HOM05D005229 ORTHO05D006378 4.9e-80 301.6 165 87.9
Zm00001eb336580 Zea mays HOM05D005229 ORTHO05D006378 8.7e-77 290.8 163 85.9
Mapoly0102s0025 Marchantia polymorpha HOM05D005229 ORTHO05D006378 4.3e-76 288.5 192 73.4
Pp3c16_5670 Physcomitrium patens HOM05D005229 ORTHO05D006378 3.8e-72 275.4 203 68.5
Nitab4.5_0001348g0130 Nicotiana tabacum HOM05D005229 ORTHO05D006378 6.4e-72 274.6 165 81.2
Dinv28794 Davidia involucrata HOM05D005229 ORTHO05D006378 8.4e-72 274.2 219 69.4
Pp3c5_4200 Physcomitrium patens HOM05D005229 ORTHO05D006378 1.1e-71 273.9 175 76.0
Pp3c27_2310 Physcomitrium patens HOM05D005229 ORTHO05D006378 1.2e-70 270.4 169 75.7
AagrBONN_evm.TU.Sc2ySwM_362.2854 Anthoceros agrestis HOM05D005229 ORTHO05D006378 2.3e-69 266.2 209 66.5
Nitab4.5_0001348g0080 Nicotiana tabacum HOM05D005229 ORTHO05D006378 1.3e-61 240.4 219 61.2
CBR_g27900 Chara braunii HOM05D005229 ORTHO05D006378 2.3e-61 239.6 218 58.7
Peaxi162Scf01242g00025 Petunia axillaris HOM05D005229 ORTHO05D006378 1.8e-58 229.9 220 59.5
Actinidia23801 Actinidia chinensis HOM05D005229 ORTHO05D006378 3.8e-48 195.7 139 79.9
MCO13G042 Micromonas commoda HOM05D005229 ORTHO05D006378 1.4e-47 193.7 196 53.6
Cre12.g486300 Chlamydomonas reinhardtii HOM05D005229 ORTHO05D006378 9.4e-47 191.0 171 58.5
Hma1.2p1_0171F.1_g075540 Hydrangea macrophylla HOM05D005229 ORTHO05D006378 3.0e-45 186.0 127 72.4
PRCOL_00002830 Prasinoderma coloniale HOM05D005229 ORTHO05D006378 5.7e-44 181.8 150 58.7
MD04G1204600 Malus domestica HOM05D000208 ORTHO05D000130 8.0e-30 134.8 105 71.4
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.1e-15 87.8 59 74.6
Actinidia12853 Actinidia chinensis HOM05D001772 ORTHO05D000476 1.1e-15 87.8 59 74.6
Nitab4.5_0014403g0020 Nicotiana tabacum HOM05D005229 ORTHO05D006378 4.9e-11 72.4 57 68.4
Nitab4.5_0007144g0010 Nicotiana tabacum HOM05D005229 ORTHO05D006378 1.6e-09 67.4 55 65.5
Aa31LG9G5680 Aethionema arabicum HOM05D001772 ORTHO05D000476 3.8e-08 62.8 56 64.3
Actinidia23346 Actinidia chinensis HOM05D005229 ORTHO05D057974 1.2e-06 57.8 100 40.0
Potri.015G041900 Populus trichocarpa HOM05D000149 ORTHO05D000076 2.8e-06 56.6 68 52.9


User provided reference genes

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