Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc8.294 Carica papaya HOM05D003806 ORTHO05D004346 0.0e+00 2192.5 1434 100.0
Thecc.01G172500 Theobroma cacao HOM05D003806 ORTHO05D004346 1.9e-241 840.5 1534 47.2
Cfa023525 Carpinus fangiana HOM05D003806 ORTHO05D004346 8.9e-239 831.6 1534 48.4
Manes.09G072900 Manihot esculenta HOM05D003806 ORTHO05D004346 9.0e-231 805.1 1538 48.4
COL.COLO4_33757 Corchorus olitorius HOM05D003806 ORTHO05D004346 4.9e-229 799.3 1535 45.3
TWI34G1284 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 1.9e-220 770.8 1535 48.9
Prupe.3G186800 Prunus persica HOM05D003806 ORTHO05D004346 2.3e-218 763.8 1533 45.5
Ciclev10010914m.g Citrus clementina HOM05D003806 ORTHO05D004346 2.0e-214 750.7 1535 48.5
TWI60G0662 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 2.0e-214 750.7 1194 53.6
Duzib138G1777 Durio zibethinus HOM05D003806 ORTHO05D004346 2.6e-214 750.4 1534 44.6
MD17G1128600 Malus domestica HOM05D003806 ORTHO05D004346 1.9e-212 744.2 1532 44.0
MD09G1138500 Malus domestica HOM05D003806 ORTHO05D004346 6.9e-207 725.7 1553 44.0
TAR626G1670 Trochodendron aralioides HOM05D003806 ORTHO05D004346 1.1e-204 718.4 1550 41.4
Dinv08951 Davidia involucrata HOM05D003806 ORTHO05D004346 3.0e-202 710.3 1458 43.7
RcHm_v2.0_Chr2g0153621 Rosa chinensis HOM05D003806 ORTHO05D004346 3.4e-198 696.8 1533 44.6
Sabra06G0014700 Salix brachista HOM05D003806 ORTHO05D004346 4.5e-198 696.4 1160 50.9
QL04p061548 Quercus lobata HOM05D003806 ORTHO05D004346 4.2e-196 689.9 1533 43.3
Sed0016792 Sechium edule HOM05D003806 ORTHO05D004346 8.8e-194 682.2 1596 42.0
Sabra16G0020700 Salix brachista HOM05D003806 ORTHO05D004346 2.0e-193 681.0 1536 43.3
Sabra16G0025500 Salix brachista HOM05D003806 ORTHO05D004346 5.7e-193 679.5 1536 43.3
CiPaw.03G113300 Carya illinoinensis HOM05D003806 ORTHO05D004346 8.2e-192 675.6 1534 43.4
Atru.chr8.989 Acer truncatum HOM05D003806 ORTHO05D004346 3.1e-191 673.7 1617 43.8
CiPaw.04G076200 Carya illinoinensis HOM05D003806 ORTHO05D004346 3.4e-190 670.2 1114 44.3
Haze_13639 Corylus avellana HOM05D003806 ORTHO05D004346 1.7e-189 667.9 1495 45.4
MBI02_g35832_MAGBIO Magnolia biondii HOM05D003806 ORTHO05D004346 2.2e-189 667.5 1723 40.5
PSO541G2929 Papaver somniferum HOM05D003806 ORTHO05D004346 6.7e-186 656.0 1637 36.7
FAN05G0560 Fragaria x ananassa HOM05D003806 ORTHO05D004346 2.0e-185 654.4 1531 42.8
Gohir.A07G081500 Gossypium hirsutum HOM05D003806 ORTHO05D004346 2.2e-184 651.0 1532 44.1
Lj1A1039T31 Lonicera japonica HOM05D003806 ORTHO05D004346 1.1e-183 648.7 1533 42.4
VMungo1127G1373 Vigna mungo HOM05D003806 ORTHO05D004346 1.8e-183 647.9 1530 41.2
FAN09G2907 Fragaria x ananassa HOM05D003806 ORTHO05D004346 5.3e-183 646.4 1531 43.4
Sabra06G0014600 Salix brachista HOM05D003806 ORTHO05D004346 6.5e-181 639.4 1533 42.5
Nn7g38253 Nelumbo nucifera HOM05D003806 ORTHO05D004346 5.2e-178 629.8 1544 43.6
Hma1.2p1_0401F.1_g144710 Hydrangea macrophylla HOM05D003806 ORTHO05D004346 3.5e-174 617.1 1500 40.6
PGR031G3264 Punica granatum HOM05D003806 ORTHO05D004346 1.0e-173 615.5 1213 44.5
arahy.Tifrunner.gnm1.ann1.LI5V6E Arachis hypogaea HOM05D003806 ORTHO05D004346 3.2e-172 610.5 1536 41.1
CSS0010582 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 3.6e-171 607.1 1541 40.9
Gohir.D07G087100 Gossypium hirsutum HOM05D003806 ORTHO05D004346 3.6e-171 607.1 1533 42.7
Actinidia28585 Actinidia chinensis HOM05D003806 ORTHO05D004346 1.0e-170 605.5 1155 43.8
Gorai.001G093100 Gossypium raimondii HOM05D003806 ORTHO05D004346 2.6e-169 600.9 1540 42.3
FvH4_6g39571 Fragaria vesca HOM05D003806 ORTHO05D004346 4.4e-169 600.1 1531 42.1
FAN02G2860 Fragaria x ananassa HOM05D003806 ORTHO05D004346 7.5e-169 599.4 1544 42.1
arahy.Tifrunner.gnm1.ann1.TP1CMR Arachis hypogaea HOM05D003806 ORTHO05D004346 1.7e-168 598.2 1536 40.5
Cc05_g00050 Coffea canephora HOM05D003806 ORTHO05D004346 1.7e-168 598.2 1534 41.5
Lj3g0015803 Lotus japonicus HOM05D003806 ORTHO05D004346 1.0e-162 578.9 1439 45.0
Phvul.011G024500 Phaseolus vulgaris HOM05D003806 ORTHO05D004346 1.2e-161 575.5 1530 39.3
ClCG07G010910 Citrullus lanatus HOM05D003806 ORTHO05D004346 3.4e-161 573.9 1586 38.5
CsaV3_4G007390 Cucumis sativus L. HOM05D003806 ORTHO05D004346 2.8e-160 570.9 1597 38.7
Gohir.A11G156200 Gossypium hirsutum HOM05D003806 ORTHO05D004346 4.9e-160 570.1 1533 41.6
Gohir.D11G163300 Gossypium hirsutum HOM05D003806 ORTHO05D004346 2.4e-159 567.8 1531 40.0
Nitab4.5_0000170g0440 Nicotiana tabacum HOM05D003806 ORTHO05D004346 2.4e-159 567.8 1532 37.7
Nitab4.5_0002232g0030 Nicotiana tabacum HOM05D003806 ORTHO05D004346 3.1e-159 567.4 1531 37.2
Gorai.007G174000 Gossypium raimondii HOM05D003806 ORTHO05D004346 1.2e-158 565.5 1531 40.3
Eucgr.A00904 Eucalyptus grandis HOM05D003806 ORTHO05D004346 2.0e-158 564.7 1568 39.3
Solyc07g043320.3 Solanum lycopersicum HOM05D003806 ORTHO05D004346 2.3e-157 561.2 1726 37.4
Glyma.12G022500 Glycine max HOM05D003806 ORTHO05D004346 2.9e-157 560.8 1530 38.8
Glyma.11G096400 Glycine max HOM05D003806 ORTHO05D004346 8.6e-157 559.3 1531 41.1
Potri.006G021200 Populus trichocarpa HOM05D003806 ORTHO05D004346 2.0e-153 548.1 1558 41.3
vmacro08755 Vaccinium macrocarpon HOM05D003806 ORTHO05D004346 2.2e-152 544.7 1230 42.2
Potri.016G018700 Populus trichocarpa HOM05D003806 ORTHO05D004346 3.7e-152 543.9 1536 39.8
PSO675G3405 Papaver somniferum HOM05D003806 ORTHO05D004346 1.1e-151 542.3 1645 34.7
FAN14G1588 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.8e-151 541.6 1544 40.5
FAN14G4911 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.8e-151 541.6 1544 40.5
Aqoxy1G01455 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 7.0e-151 539.7 1492 40.6
Rhsim12G0014400 Rhododendron simsii HOM05D003806 ORTHO05D004346 5.0e-149 533.5 1250 41.2
MSTRG.6602 Avicennia marina HOM05D003806 ORTHO05D004346 1.2e-147 528.9 1558 35.4
GSVIVG01015817001 Vitis vinifera HOM05D003806 ORTHO05D004346 9.8e-145 519.2 1044 38.8
Lalb_Chr01g0001171 Lupinus albus HOM05D003806 ORTHO05D004346 2.7e-142 511.1 1533 38.0
Dinv09877 Davidia involucrata HOM05D003806 ORTHO05D004346 3.0e-141 507.7 776 46.6
DCAR_009841 Daucus carota HOM05D003806 ORTHO05D004346 3.3e-140 504.2 1118 43.2
Sed0003037 Sechium edule HOM05D003806 ORTHO05D004346 5.2e-138 496.9 1561 38.5
THA.LOC104816049 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 1.1e-135 489.2 1537 37.2
Psat7g179080 Pisum sativum HOM05D003806 ORTHO05D004346 1.9e-135 488.4 1534 41.4
THA.LOC104800972 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 7.8e-134 483.0 1544 40.6
Sopen07g022880 Solanum pennellii HOM05D003806 ORTHO05D004346 9.5e-132 476.1 1725 34.3
Ca_11242_v3 Cicer arietinum L. HOM05D003806 ORTHO05D004346 1.2e-126 459.1 1537 40.5
CANSAT64G1444 Cannabis sativa HOM05D003806 ORTHO05D004346 3.3e-124 451.1 1538 35.4
Medtr4g076030 Medicago truncatula HOM05D003806 ORTHO05D004346 9.6e-124 449.5 1536 36.8
Peaxi162Scf00393g00413 Petunia axillaris HOM05D003806 ORTHO05D004346 9.6e-124 449.5 1531 37.8
Duzib133G0409 Durio zibethinus HOM05D003806 ORTHO05D004346 1.8e-122 445.3 2420 30.2
Oeu003096.1 Olea europaea HOM05D003806 ORTHO05D004346 2.2e-120 438.3 1531 35.9
TAR624G1065 Trochodendron aralioides HOM05D003806 ORTHO05D004346 5.4e-111 407.1 1500 33.7
PGSC0003DMG400011753 Solanum tuberosum HOM05D003806 ORTHO05D004346 1.0e-109 402.9 926 35.7
MSTRG.14879 Avicennia marina HOM05D003806 ORTHO05D004346 6.2e-107 393.7 1533 33.7
Lalb_Chr19g0139591 Lupinus albus HOM05D003806 ORTHO05D004346 8.1e-107 393.3 1292 39.7
MELO3C016203.2 Cucumis melo HOM05D003806 ORTHO05D004346 7.4e-100 370.2 1464 35.5
Lsat_1_v5_gn_3_34740 Lactuca sativa HOM05D003806 ORTHO05D004346 4.9e-96 357.5 1239 37.5
Migut.M00098 Erythranthe guttata HOM05D003806 ORTHO05D004346 1.9e-92 345.5 1249 37.8
TPR.G21252 Trifolium pratense HOM05D003806 ORTHO05D004346 2.5e-92 345.1 1536 33.6
Sabra06G0015000 Salix brachista HOM05D003806 ORTHO05D004346 1.4e-87 329.3 902 42.1
CSS0042337 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 3.8e-80 304.7 1734 30.9
HPP92_009459 Vanilla planifolia HOM05D003806 ORTHO05D004346 5.0e-80 304.3 1347 30.5
ECA246G1737 Erigeron canadensis HOM05D003806 ORTHO05D004346 6.5e-80 303.9 1244 31.8
CDE05G0051 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 1.4e-77 296.2 839 39.2
HanXRQChr17g0541141 Helianthus annuus HOM05D003806 ORTHO05D004346 3.7e-75 288.1 1086 38.6
Actinidia12514 Actinidia chinensis HOM05D003806 ORTHO05D004346 5.2e-69 267.7 333 50.8
Sp4g14610 Schrenkiella parvula HOM05D003806 ORTHO05D004346 3.8e-64 251.5 1531 34.6
SGA_v2.0_scaffold73G24430 Striga asiatica HOM05D003806 ORTHO05D004346 8.5e-64 250.4 1525 29.0
Actinidia31596 Actinidia chinensis HOM05D003806 ORTHO05D004346 3.0e-61 241.9 756 32.0
Actinidia12513 Actinidia chinensis HOM05D003806 ORTHO05D004346 1.5e-60 239.6 327 48.6
AT1G05320 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 1.5e-60 239.6 825 30.4
Carub.0001s0463 Capsella rubella HOM05D003806 ORTHO05D004346 2.2e-56 225.7 1442 29.9
HanXRQChr06g0171661 Helianthus annuus HOM05D003806 ORTHO05D004346 3.8e-56 224.9 288 49.3
CDE02G3965 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 1.5e-55 223.0 1212 37.7
HanXRQChr15g0470351 Helianthus annuus HOM05D003806 ORTHO05D004346 8.0e-54 217.2 264 51.5
ATR0763G047 Amborella trichopoda HOM05D003806 ORTHO05D004346 3.0e-53 215.3 1078 26.9
CARHR126030 Cardamine hirsuta HOM05D003806 ORTHO05D004346 4.4e-52 211.5 1532 32.7
Peaxi162Scf00141g01119 Petunia axillaris HOM05D001948 ORTHO05D001873 4.4e-52 211.5 393 39.9
Aqoxy7G02954 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 5.7e-52 211.1 695 30.8
Oeu048050.1 Olea europaea HOM05D003806 ORTHO05D004346 9.1e-50 203.8 272 48.5
BolC5t29142H Brassica oleracea HOM05D003806 ORTHO05D004346 7.2e-47 194.1 1051 27.8
SalBow7G1206 Salvia bowleyana HOM05D003806 ORTHO05D004346 1.0e-45 190.3 1533 29.7
Oeu021135.1 Olea europaea HOM05D003806 ORTHO05D004346 4.0e-45 188.3 353 39.4
Aa31LG5G4290 Aethionema arabicum HOM05D003806 ORTHO05D004346 2.0e-44 186.0 1532 31.4
DCAR_013337 Daucus carota HOM05D003806 ORTHO05D004346 2.2e-43 182.6 1072 27.5
Sp1g04190 Schrenkiella parvula HOM05D003806 ORTHO05D004346 7.0e-42 177.6 1440 29.9
unitig_8.g4605 Utricularia gibba HOM05D001005 ORTHO05D000836 7.0e-42 177.6 1410 26.0
unitig_85.g27313 Utricularia gibba HOM05D003806 ORTHO05D004346 3.6e-38 165.2 301 39.9
BcaC01g05916 Brassica carinata HOM05D003806 ORTHO05D004346 6.8e-37 161.0 317 40.7
BcaC02g11341 Brassica carinata HOM05D003806 ORTHO05D001704 1.2e-36 160.2 1540 31.4
EL10Ac2g03814 Beta vulgaris HOM05D003806 ORTHO05D004346 1.1e-34 153.7 1513 30.5
C05p03650 Brassica napus HOM05D003806 ORTHO05D004346 1.1e-34 153.7 748 35.4
AL4G27610 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 1.9e-34 152.9 1536 32.0
C04p17390 Brassica napus HOM05D003806 ORTHO05D004346 7.0e-34 151.0 1544 31.4
Sc23g0004300 Simmondsia chinensis HOM05D003806 ORTHO05D004346 2.3e-32 146.0 772 26.2
A05p13020 Brassica napus HOM05D003806 ORTHO05D004346 1.9e-31 142.9 1532 31.7
SEGI_00522 Sequoiadendron giganteum HOM05D003806 ORTHO05D004346 1.6e-30 139.8 440 29.5
Carub.0004s1356 Capsella rubella HOM05D003806 ORTHO05D004346 2.1e-30 139.4 772 26.0
Ah.11g044370 Amaranthus hybridus HOM05D003806 ORTHO05D004346 4.7e-30 138.3 166 50.6
BolC4t23290H Brassica oleracea HOM05D008171 ORTHO05D006541 4.0e-29 135.2 1535 31.1
A03p18080 Brassica napus HOM05D003806 ORTHO05D004346 8.9e-29 134.0 323 37.8
A10p04030 Brassica napus HOM05D003806 ORTHO05D004346 2.0e-28 132.9 1051 25.9
CANSAT64G1938 Cannabis sativa HOM05D003806 ORTHO05D004346 2.0e-28 132.9 247 42.5
Hund19432 Selenicereus undatus HOM05D003806 ORTHO05D004346 4.4e-28 131.7 177 42.9
C03p21110 Brassica napus HOM05D003806 ORTHO05D004346 7.5e-28 131.0 283 38.5
BolC3t14493H Brassica oleracea HOM05D003806 ORTHO05D004346 7.5e-28 131.0 283 38.5
SGA_v2.0_scaffold181G39737 Striga asiatica HOM05D003806 ORTHO05D004346 1.1e-26 127.1 308 35.7
AL1G15120 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 1.4e-26 126.7 1434 24.9
Os04g0614650 Oryza sativa ssp. japonica HOM05D003806 ORTHO05D004346 1.2e-25 123.6 437 28.4
AT2G32240 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 4.6e-25 121.7 772 24.9
AUR62043987 Chenopodium quinoa HOM05D003806 ORTHO05D004346 7.8e-25 120.9 858 25.9
BraA10t42674Z Brassica rapa HOM05D003806 ORTHO05D004346 1.7e-24 119.8 394 29.4
Thhalv10016148m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 1.9e-23 116.3 1537 30.3
AUR62009108 Chenopodium quinoa HOM05D003806 ORTHO05D004346 8.9e-21 107.5 927 24.7
BraA05t20242Z Brassica rapa HOM05D003806 ORTHO05D004346 3.7e-19 102.1 1532 29.2
Thhalv10006865m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 3.7e-19 102.1 735 33.9
C08p51770 Brassica napus HOM05D003806 ORTHO05D004346 6.4e-19 101.3 194 39.7
MD09G1138300 Malus domestica HOM05D003806 ORTHO05D004346 1.4e-18 100.1 109 56.9
AUR62020563 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.9e-18 99.8 878 25.3
AUR62020559 Chenopodium quinoa HOM05D003806 ORTHO05D004346 9.2e-18 97.4 181 37.6
AUR62044057 Chenopodium quinoa HOM05D003806 ORTHO05D004346 2.7e-17 95.9 264 30.7
BraA03t11067Z Brassica rapa HOM05D003806 ORTHO05D004346 4.6e-17 95.1 319 32.6
AUR62044188 Chenopodium quinoa HOM05D003806 ORTHO05D004346 6.0e-17 94.7 264 30.3
Sabra06G0014900 Salix brachista HOM05D003806 ORTHO05D004346 7.8e-17 94.4 117 57.3
BraA09t42077Z Brassica rapa HOM05D003806 ORTHO05D004346 1.0e-16 94.0 467 27.0
Aa31LG1G19290 Aethionema arabicum HOM05D003806 ORTHO05D004346 1.1e-15 90.5 145 42.8
Aa31LG1G19380 Aethionema arabicum HOM05D003806 ORTHO05D004346 1.1e-15 90.5 145 42.8
BolC8t52706H Brassica oleracea HOM05D003806 ORTHO05D004346 1.1e-15 90.5 178 39.3
ATR0763G279 Amborella trichopoda HOM05D003806 ORTHO05D004346 4.3e-15 88.6 350 30.9
unitig_85.g27314 Utricularia gibba HOM05D003806 ORTHO05D004346 4.3e-15 88.6 101 51.5
A09p67490 Brassica napus HOM05D003806 ORTHO05D004346 5.6e-15 88.2 468 25.4
Sabra06G0015100 Salix brachista HOM05D003806 ORTHO05D004346 7.3e-15 87.8 90 61.1
HPP92_027643 Vanilla planifolia HOM05D003806 ORTHO05D004346 2.1e-14 86.3 185 38.9
BcaC09g49104 Brassica carinata HOM05D003806 ORTHO05D004346 8.1e-14 84.3 109 48.6
Actinidia31597 Actinidia chinensis HOM05D003806 ORTHO05D004346 1.1e-13 84.0 166 41.6
Nn2g14903 Nelumbo nucifera HOM05D002721 ORTHO05D002919 2.4e-13 82.8 440 25.2
Zm00001eb070840 Zea mays HOM05D003806 ORTHO05D004346 3.4e-12 79.0 103 43.7
CDE02G3207 Ceratophyllum demersum HOM05D042561 ORTHO05D004346 8.4e-11 74.3 442 25.8
Nn7g36612 Nelumbo nucifera HOM05D002721 ORTHO05D002919 1.4e-10 73.6 419 24.3
CARHR004810 Cardamine hirsuta HOM05D003806 ORTHO05D004346 1.9e-10 73.2 318 30.5
Zm00001eb430870 Zea mays HOM05D003806 ORTHO05D004346 6.0e-09 68.2 322 27.3
AUR62043600 Chenopodium quinoa HOM05D003806 ORTHO05D004346 3.0e-08 65.9 178 29.8
Peaxi162Scf00271g00618 Petunia axillaris HOM05D006663 ORTHO05D008269 3.9e-08 65.5 106 44.3
Gorai.013G098800 Gossypium raimondii HOM05D002721 ORTHO05D002919 5.1e-08 65.1 394 24.1
Cc04_g04110 Coffea canephora HOM05D003806 ORTHO05D004346 6.6e-08 64.7 57 64.9
unitig_699.g19629 Utricularia gibba HOM05D003806 ORTHO05D004346 6.6e-08 64.7 89 41.6
C01p42510 Brassica napus HOM05D003806 ORTHO05D004346 8.7e-08 64.3 132 36.4
Gohir.D13G086700 Gossypium hirsutum HOM05D002721 ORTHO05D002919 8.7e-08 64.3 385 24.2
Dinv29619 Davidia involucrata HOM05D003806 ORTHO05D004346 1.5e-07 63.5 53 62.3
CDE06G0039 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 4.3e-07 62.0 79 45.6
Thecc.02G319900 Theobroma cacao HOM05D002721 ORTHO05D002919 7.3e-07 61.2 453 21.2
Gohir.A13G091300 Gossypium hirsutum HOM05D002721 ORTHO05D002919 9.6e-07 60.8 394 23.1
SEGI_03911 Sequoiadendron giganteum HOM05D003806 ORTHO05D002919 9.6e-07 60.8 501 24.4
COL.COLO4_25875 Corchorus olitorius HOM05D002721 ORTHO05D002919 1.3e-06 60.5 464 24.1
Duzib248G1050 Durio zibethinus HOM05D002721 ORTHO05D002919 1.3e-06 60.5 456 21.3
Duzib251G0850 Durio zibethinus HOM05D002721 ORTHO05D002919 6.2e-06 58.2 396 23.5


User provided reference genes

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