Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc78.74 Carica papaya HOM05D004668 ORTHO05D006460 4.3e-217 757.7 379 100.0
Manes.16G069151 Manihot esculenta HOM05D004668 ORTHO05D006460 1.2e-190 669.8 346 96.2
Thecc.09G041000 Theobroma cacao HOM05D004668 ORTHO05D006460 8.5e-189 663.7 346 96.0
Sabra06G0188700 Salix brachista HOM05D004668 ORTHO05D006460 7.2e-188 660.6 436 78.7
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 9.4e-188 660.2 346 95.4
QL12p029595 Quercus lobata HOM05D004668 ORTHO05D006460 1.2e-187 659.8 345 94.8
Potri.006G241300 Populus trichocarpa HOM05D004668 ORTHO05D006460 2.7e-187 658.7 346 94.5
CiPaw.07G206300 Carya illinoinensis HOM05D004668 ORTHO05D006460 3.6e-187 658.3 346 94.5
Gorai.010G110200 Gossypium raimondii HOM05D004668 ORTHO05D006460 6.1e-187 657.5 346 95.4
Gohir.A05G047900 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.4e-186 656.4 346 94.8
Gohir.A06G095600 Gossypium hirsutum HOM05D004668 ORTHO05D006460 3.0e-186 655.2 346 94.8
Duzib150G0487 Durio zibethinus HOM05D004668 ORTHO05D006460 4.0e-186 654.8 346 94.5
COL.COLO4_18686 Corchorus olitorius HOM05D004668 ORTHO05D006460 8.8e-186 653.7 346 94.5
Gorai.009G051100 Gossypium raimondii HOM05D004668 ORTHO05D006460 1.2e-185 653.3 346 94.2
Eucgr.C02897 Eucalyptus grandis HOM05D004668 ORTHO05D006460 1.5e-185 652.9 346 92.8
Gohir.D06G095700 Gossypium hirsutum HOM05D004668 ORTHO05D006460 5.7e-185 651.0 346 94.5
Dinv30261 Davidia involucrata HOM05D004668 ORTHO05D006460 9.8e-185 650.2 346 93.1
Gohir.D05G049800 Gossypium hirsutum HOM05D004668 ORTHO05D006460 9.8e-185 650.2 346 93.9
Rhsim07G0153100 Rhododendron simsii HOM05D004668 ORTHO05D006460 1.3e-184 649.8 346 92.8
arahy.Tifrunner.gnm1.ann1.1GG9S8 Arachis hypogaea HOM05D004668 ORTHO05D006460 1.7e-184 649.4 346 93.1
arahy.Tifrunner.gnm1.ann1.ID3432 Arachis hypogaea HOM05D004668 ORTHO05D006460 1.7e-184 649.4 346 93.1
Cc08_g09100 Coffea canephora HOM05D004668 ORTHO05D006460 2.2e-184 649.0 346 92.5
Atru.chr7.2149 Acer truncatum HOM05D004668 ORTHO05D006460 2.8e-184 648.7 344 93.3
CSS0016357 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 2.8e-184 648.7 346 92.5
VMungo1309G0977 Vigna mungo HOM05D004668 ORTHO05D006460 8.3e-184 647.1 346 92.8
Phvul.009G106900 Phaseolus vulgaris HOM05D004668 ORTHO05D006460 1.1e-183 646.7 346 93.1
CSS0043453 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 1.8e-183 646.0 346 92.5
Nitab4.5_0009807g0010 Nicotiana tabacum HOM05D004668 ORTHO05D006460 3.1e-183 645.2 346 92.5
Lj1g0002470 Lotus japonicus HOM05D004668 ORTHO05D006460 4.1e-183 644.8 346 92.5
Ciclev10007989m.g Citrus clementina HOM05D004668 ORTHO05D006460 5.4e-183 644.4 346 91.9
Prupe.1G451600 Prunus persica HOM05D004668 ORTHO05D006460 5.4e-183 644.4 346 92.5
Glyma.04G080800 Glycine max HOM05D004668 ORTHO05D006460 7.0e-183 644.0 346 92.5
Haze_21865 Corylus avellana HOM05D004668 ORTHO05D006460 2.0e-182 642.5 385 85.7
Glyma.06G082500 Glycine max HOM05D004668 ORTHO05D006460 2.7e-182 642.1 346 92.2
Hma1.2p1_0140F.1_g063460 Hydrangea macrophylla HOM05D004668 ORTHO05D006460 3.5e-182 641.7 343 91.8
Potri.018G038500 Populus trichocarpa HOM05D004668 ORTHO05D006460 4.5e-182 641.3 346 91.9
Nn3g18078 Nelumbo nucifera HOM05D004668 ORTHO05D006460 5.9e-182 641.0 346 91.6
GSVIVG01035660001 Vitis vinifera HOM05D004668 ORTHO05D006460 5.9e-182 641.0 346 91.0
CANSAT25G3625 Cannabis sativa HOM05D004668 ORTHO05D006460 2.2e-181 639.0 346 91.9
BcaNung04843 Brassica carinata HOM05D004668 ORTHO05D006460 2.9e-181 638.6 346 91.0
Sabra18G0038900 Salix brachista HOM05D004668 ORTHO05D006460 2.9e-181 638.6 344 91.9
Duzib187G0091 Durio zibethinus HOM05D004668 ORTHO05D006460 5.0e-181 637.9 400 82.8
MD15G1096700 Malus domestica HOM05D004668 ORTHO05D006460 5.0e-181 637.9 346 91.0
TAR626G0558 Trochodendron aralioides HOM05D004668 ORTHO05D006460 5.0e-181 637.9 346 91.0
TAR383G0581 Trochodendron aralioides HOM05D004668 ORTHO05D006460 8.5e-181 637.1 346 91.0
Lalb_Chr08g0243231 Lupinus albus HOM05D004668 ORTHO05D006460 1.1e-180 636.7 346 91.0
Lalb_Chr11g0064411 Lupinus albus HOM05D004668 ORTHO05D006460 1.1e-180 636.7 346 91.0
MELO3C003453.2 Cucumis melo HOM05D004668 ORTHO05D006460 1.5e-180 636.3 347 91.6
Thhalv10003996m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 2.5e-180 635.6 346 90.8
Thhalv10004012m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 2.5e-180 635.6 346 90.8
Sp2g21880 Schrenkiella parvula HOM05D004668 ORTHO05D006460 3.2e-180 635.2 346 90.5
MSTRG.1654 Avicennia marina HOM05D004668 ORTHO05D006460 7.2e-180 634.0 346 90.2
PGR044G2637 Punica granatum HOM05D004668 ORTHO05D006460 7.2e-180 634.0 346 91.3
AUR62009316 Chenopodium quinoa HOM05D004668 ORTHO05D006460 9.5e-180 633.6 346 90.2
MD08G1117100 Malus domestica HOM05D004668 ORTHO05D006460 9.5e-180 633.6 346 90.8
Actinidia13314 Actinidia chinensis HOM05D004668 ORTHO05D006460 1.2e-179 633.3 346 90.8
ClCG11G015260 Citrullus lanatus HOM05D004668 ORTHO05D006460 1.2e-179 633.3 347 91.4
TWI63G0192 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 1.2e-179 633.3 346 91.9
Migut.A00230 Erythranthe guttata HOM05D004668 ORTHO05D006460 1.6e-179 632.9 346 90.2
Hund03417 Selenicereus undatus HOM05D004668 ORTHO05D006460 1.6e-179 632.9 346 89.9
THA.LOC104799201 Tarenaya hassleriana HOM05D004668 ORTHO05D006460 1.6e-179 632.9 347 89.9
CsaV3_3G048680 Cucumis sativus L. HOM05D004668 ORTHO05D006460 2.8e-179 632.1 347 91.1
AUR62029669 Chenopodium quinoa HOM05D004668 ORTHO05D006460 4.7e-179 631.3 344 90.4
AUR62043617 Chenopodium quinoa HOM05D004668 ORTHO05D006460 4.7e-179 631.3 344 90.4
Actinidia31228 Actinidia chinensis HOM05D004668 ORTHO05D006460 6.1e-179 630.9 346 90.5
Aa31LG11G4750 Aethionema arabicum HOM05D004668 ORTHO05D006460 6.1e-179 630.9 346 89.6
A06p36360 Brassica napus HOM05D004668 ORTHO05D006460 1.0e-178 630.2 346 89.6
BolC7t44746H Brassica oleracea HOM05D004668 ORTHO05D006460 1.0e-178 630.2 346 89.9
BraA06t26560Z Brassica rapa HOM05D004668 ORTHO05D006460 1.0e-178 630.2 346 89.6
FAN27G2976 Fragaria x ananassa HOM05D004668 ORTHO05D006460 1.4e-178 629.8 346 90.8
Lj8A596T25 Lonicera japonica HOM05D004668 ORTHO05D006460 1.4e-178 629.8 346 90.2
BcaB04g19770 Brassica carinata HOM05D004668 ORTHO05D006460 1.8e-178 629.4 346 89.6
RcHm_v2.0_Chr6g0305871 Rosa chinensis HOM05D004668 ORTHO05D006460 1.8e-178 629.4 348 91.1
FvH4_2g36000 Fragaria vesca HOM05D004668 ORTHO05D006460 3.0e-178 628.6 346 90.5
EL10Ac2g04059 Beta vulgaris HOM05D004668 ORTHO05D006460 4.0e-178 628.2 344 89.2
DCAR_007707 Daucus carota HOM05D004668 ORTHO05D006460 4.0e-178 628.2 345 89.3
SalBow8G2719 Salvia bowleyana HOM05D004668 ORTHO05D006460 4.0e-178 628.2 346 89.0
Sed0007190 Sechium edule HOM05D004668 ORTHO05D006460 4.0e-178 628.2 347 90.2
Sp2g21870 Schrenkiella parvula HOM05D004668 ORTHO05D006460 5.2e-178 627.9 470 69.8
BcaNung03928 Brassica carinata HOM05D004668 ORTHO05D006460 8.8e-178 627.1 346 89.3
C07p42150 Brassica napus HOM05D004668 ORTHO05D006460 8.8e-178 627.1 346 89.3
Ca_15614_v3 Cicer arietinum L. HOM05D004668 ORTHO05D006460 1.2e-177 626.7 346 91.0
Lsat_1_v5_gn_5_33301 Lactuca sativa HOM05D004668 ORTHO05D006460 2.0e-177 625.9 346 90.5
PGSC0003DMG400010841 Solanum tuberosum HOM05D004668 ORTHO05D006460 2.6e-177 625.5 346 88.7
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 3.4e-177 625.2 346 90.2
Peaxi162Scf00523g00013 Petunia axillaris HOM05D004668 ORTHO05D006460 4.4e-177 624.8 380 83.9
Solyc08g068340.3 Solanum lycopersicum HOM05D004668 ORTHO05D006460 4.4e-177 624.8 346 88.7
Sopen08g022190 Solanum pennellii HOM05D004668 ORTHO05D006460 4.4e-177 624.8 346 88.7
Medtr3g110068 Medicago truncatula HOM05D004668 ORTHO05D006460 7.5e-177 624.0 346 90.5
Nn2g11692 Nelumbo nucifera HOM05D004668 ORTHO05D006460 7.5e-177 624.0 346 88.7
Sc24g0002000 Simmondsia chinensis HOM05D004668 ORTHO05D006460 7.5e-177 624.0 344 89.2
FAN20G1164 Fragaria x ananassa HOM05D004668 ORTHO05D006460 9.8e-177 623.6 346 90.2
Sed0009143 Sechium edule HOM05D004668 ORTHO05D006460 9.8e-177 623.6 347 88.8
Carub.0006s2352 Capsella rubella HOM05D004668 ORTHO05D006460 1.3e-176 623.2 346 88.2
TWI23G1109 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 8.3e-176 620.5 346 89.6
MBI01_g15706_MAGBIO Magnolia biondii HOM05D004668 ORTHO05D006460 1.8e-175 619.4 346 87.0
HanXRQChr08g0236271 Helianthus annuus HOM05D004668 ORTHO05D006460 2.4e-175 619.0 346 89.0
Psat5g022480 Pisum sativum HOM05D004668 ORTHO05D006460 2.0e-174 615.9 346 88.4
TPR.G1330 Trifolium pratense HOM05D004668 ORTHO05D006460 3.5e-174 615.1 346 88.2
Lalb_Chr23g0269511 Lupinus albus HOM05D004668 ORTHO05D006460 4.5e-174 614.8 344 87.8
AL3G41810 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 1.0e-173 613.6 346 86.7
Carub.0006s2353 Capsella rubella HOM05D004668 ORTHO05D006460 1.0e-173 613.6 346 86.4
Aqoxy7G01598 Aquilegia oxysepala HOM05D004668 ORTHO05D006460 3.8e-173 611.7 347 86.5
AL6G37550 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 1.9e-172 609.4 346 86.1
SGA_v2.0_scaffold169G38650 Striga asiatica HOM05D004668 ORTHO05D006460 5.6e-172 607.8 357 85.4
ECA246G0301 Erigeron canadensis HOM05D004668 ORTHO05D006460 1.0e-170 603.6 346 86.7
PSO782G3981 Papaver somniferum HOM05D004668 ORTHO05D006460 8.9e-170 600.5 347 85.3
ATR0315G076 Amborella trichopoda HOM05D004668 ORTHO05D006460 2.6e-169 599.0 346 81.8
PSO566G0146 Papaver somniferum HOM05D004668 ORTHO05D006460 3.4e-169 598.6 347 84.7
AT5G25754 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 5.7e-169 597.8 347 85.9
AT5G25757 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 5.7e-169 597.8 347 85.9
CDE04G3150 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 5.7e-169 597.8 345 82.6
CARHR289290 Cardamine hirsuta HOM05D004668 ORTHO05D006460 1.1e-167 593.6 332 88.0
CDE02G2035 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 1.8e-167 592.8 332 86.1
HPP92_023911 Vanilla planifolia HOM05D004668 ORTHO05D006460 9.5e-164 580.5 346 80.1
Zm00001eb119330 Zea mays HOM05D004668 ORTHO05D006460 2.9e-160 568.9 346 78.3
Zm00001eb339230 Zea mays HOM05D004668 ORTHO05D006460 1.1e-159 567.0 344 78.8
BcaC03g17894 Brassica carinata HOM05D004668 ORTHO05D006460 1.4e-159 566.6 354 80.5
SHI18650 Sapria himalayana HOM05D004668 ORTHO05D006460 5.4e-159 564.7 332 84.0
Os05g0227700 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 7.8e-158 560.8 346 77.5
SGA_v2.0_scaffold163G38083 Striga asiatica HOM05D004668 ORTHO05D006460 1.3e-157 560.1 347 81.6
unitig_748.g7800 Utricularia gibba HOM05D004668 ORTHO05D006460 2.3e-157 559.3 344 81.1
Os01g0229100 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 3.9e-157 558.5 346 75.7
HPP92_023943 Vanilla planifolia HOM05D004668 ORTHO05D006460 1.5e-156 556.6 346 77.7
Pp3s48_70 Physcomitrium patens HOM05D004668 ORTHO05D006460 1.5e-148 530.0 346 72.8
Mapoly0007s0280 Marchantia polymorpha HOM05D004668 ORTHO05D006460 2.5e-148 529.3 346 71.7
Pp3c21_22430 Physcomitrium patens HOM05D004668 ORTHO05D006460 1.6e-147 526.6 346 72.5
Dinv14234 Davidia involucrata HOM05D004668 ORTHO05D006460 1.2e-145 520.4 275 94.2
Mapoly0008s0020 Marchantia polymorpha HOM05D004668 ORTHO05D006460 5.8e-145 518.1 346 69.7
CBR_g38842 Chara braunii HOM05D004668 ORTHO05D006460 1.4e-135 486.9 344 67.4
AagrBONN_evm.TU.Sc2ySwM_344.1641 Anthoceros agrestis HOM05D004668 ORTHO05D006460 3.2e-135 485.7 345 67.8
SEGI_23309 Sequoiadendron giganteum HOM05D004668 ORTHO05D006460 1.3e-133 480.3 346 69.4
C02p59370 Brassica napus HOM05D004668 ORTHO05D006460 5.6e-124 448.4 284 80.3
SMO118G0091 Selaginella moellendorffii HOM05D004668 ORTHO05D006460 5.8e-121 438.3 369 58.8
AL6G38760 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 6.1e-102 375.2 243 79.0
PRCOL_00004532 Prasinoderma coloniale HOM05D004668 ORTHO05D006460 5.2e-85 318.9 344 47.1
MCO02G037 Micromonas commoda HOM05D004668 ORTHO05D006460 1.4e-74 284.3 367 45.8
Oeu012190.1 Olea europaea HOM05D004668 ORTHO05D006460 9.4e-71 271.6 346 47.4
Cre17.g697450 Chlamydomonas reinhardtii HOM05D004668 ORTHO05D006460 5.2e-69 265.8 355 43.4
Cfa026236 Carpinus fangiana HOM05D004668 ORTHO05D123177 3.6e-62 243.0 336 39.6
vmacro05363 Vaccinium macrocarpon HOM05D004668 ORTHO05D006460 6.6e-56 222.2 115 91.3
CAN.G21.33 Capsicum annuum HOM05D004668 ORTHO05D006460 1.2e-54 218.0 114 90.4
BolC2t12000H Brassica oleracea HOM05D004668 ORTHO05D006460 1.6e-41 174.5 93 88.2
HanXRQChr06g0165701 Helianthus annuus HOM05D004668 ORTHO05D220881 1.6e-41 174.5 220 48.6
HanXRQChr06g0165631 Helianthus annuus HOM05D004668 ORTHO05D220789 1.0e-40 171.8 271 42.8
Nitab4.5_0000052g0210 Nicotiana tabacum HOM05D004668 ORTHO05D044669 7.8e-33 145.6 79 87.3
Cc08_g09150 Coffea canephora HOM05D004668 ORTHO05D044669 5.4e-26 122.9 68 85.3
SGA_v2.0_scaffold47G17509 Striga asiatica HOM05D004668 ORTHO05D405290 2.3e-16 90.9 72 66.7
Medtr3g109300 Medicago truncatula HOM05D000944 ORTHO05D003581 1.1e-13 82.0 125 43.2


User provided reference genes

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