Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc776.6 Carica papaya HOM05D002081 ORTHO05D002088 8.6e-27 122.9 60 100.0
TWI15G0806 Tripterygium wilfordii HOM05D002081 ORTHO05D002088 2.5e-18 94.7 60 76.7
TWI38G1695 Tripterygium wilfordii HOM05D002081 ORTHO05D002088 2.3e-16 88.2 60 68.3
Actinidia02912 Actinidia chinensis HOM05D002081 ORTHO05D002088 7.5e-15 83.2 60 70.0
Hma1.2p1_0039F.1_g024690 Hydrangea macrophylla HOM05D002081 ORTHO05D002088 7.5e-15 83.2 57 73.7
FAN03G2328 Fragaria x ananassa HOM05D002081 ORTHO05D002088 1.3e-14 82.4 62 71.0
Dinv16263 Davidia involucrata HOM05D002081 ORTHO05D002088 2.9e-14 81.3 60 71.7
CiPaw.01G292200 Carya illinoinensis HOM05D002081 ORTHO05D002088 6.4e-14 80.1 59 69.5
FvH4_7g23450 Fragaria vesca HOM05D002081 ORTHO05D002088 6.4e-14 80.1 62 67.7
FAN01G0841 Fragaria x ananassa HOM05D002081 ORTHO05D002088 6.4e-14 80.1 62 67.7
FAN06G3391 Fragaria x ananassa HOM05D002081 ORTHO05D002088 6.4e-14 80.1 62 67.7
FAN06G4322 Fragaria x ananassa HOM05D002081 ORTHO05D002088 6.4e-14 80.1 62 67.7
GSVIVG01016466001 Vitis vinifera HOM05D002081 ORTHO05D002088 8.3e-14 79.7 60 66.7
FAN10G0083 Fragaria x ananassa HOM05D002081 ORTHO05D002088 1.1e-13 79.3 62 67.7
Sed0003628 Sechium edule HOM05D002081 ORTHO05D002088 5.4e-13 77.0 60 65.0
Manes.10G024700 Manihot esculenta HOM05D002081 ORTHO05D002088 7.1e-13 76.6 61 67.2
Manes.10G024240 Manihot esculenta HOM05D003154 ORTHO05D003565 1.2e-12 75.9 62 66.1
Lj8C78T3 Lonicera japonica HOM05D002081 ORTHO05D002088 1.6e-12 75.5 60 63.3
Atru.chr12.306 Acer truncatum HOM05D002081 ORTHO05D002088 2.1e-12 75.1 62 62.9
Atru.chr12.302 Acer truncatum HOM05D002081 ORTHO05D002088 2.7e-12 74.7 62 62.9
Atru.chr12.309 Acer truncatum HOM05D002081 ORTHO05D002088 2.7e-12 74.7 62 62.9
Atru.chr12.338 Acer truncatum HOM05D002081 ORTHO05D002088 2.7e-12 74.7 62 62.9
Haze_17129 Corylus avellana HOM05D002081 ORTHO05D002088 2.7e-12 74.7 59 67.8
Nn2g13497 Nelumbo nucifera HOM05D002081 ORTHO05D002088 3.5e-12 74.3 58 65.5
CiPaw.02G187300 Carya illinoinensis HOM05D002081 ORTHO05D002088 4.6e-12 73.9 60 65.0
Peaxi162Scf00658g00313 Petunia axillaris HOM05D002081 ORTHO05D002088 4.6e-12 73.9 60 61.7
Cfa001415 Carpinus fangiana HOM05D002081 ORTHO05D002088 6.0e-12 73.6 59 66.1
Ciclev10032419m.g Citrus clementina HOM05D002081 ORTHO05D002088 6.0e-12 73.6 60 63.3
Gohir.D10G235900 Gossypium hirsutum HOM05D002081 ORTHO05D002088 6.0e-12 73.6 60 68.3
Gorai.011G269800 Gossypium raimondii HOM05D002081 ORTHO05D002088 6.0e-12 73.6 60 68.3
Nitab4.5_0000987g0040 Nicotiana tabacum HOM05D002081 ORTHO05D002088 6.0e-12 73.6 60 63.3
Gohir.A10G223500 Gossypium hirsutum HOM05D002081 ORTHO05D002088 7.8e-12 73.2 60 68.3
Manes.10G024133 Manihot esculenta HOM05D003154 ORTHO05D003565 1.0e-11 72.8 62 64.5
Prupe.2G240900 Prunus persica HOM05D002081 ORTHO05D002088 1.0e-11 72.8 62 62.9
TAR633G0599 Trochodendron aralioides HOM05D002081 ORTHO05D002088 1.3e-11 72.4 60 61.7
Gorai.009G319900 Gossypium raimondii HOM05D002081 ORTHO05D002088 1.7e-11 72.0 62 66.1
QL08p061675 Quercus lobata HOM05D002081 ORTHO05D002088 1.7e-11 72.0 60 68.3
Gohir.A05G302300 Gossypium hirsutum HOM05D002081 ORTHO05D002088 2.3e-11 71.6 62 66.1
Potri.008G060300 Populus trichocarpa HOM05D002081 ORTHO05D002088 2.3e-11 71.6 61 67.2
Thecc.10G034500 Theobroma cacao HOM05D002081 ORTHO05D002088 2.3e-11 71.6 62 64.5
vmacro10211 Vaccinium macrocarpon HOM05D002081 ORTHO05D002088 2.3e-11 71.6 59 64.4
Eucgr.G02991 Eucalyptus grandis HOM05D002081 ORTHO05D002088 3.0e-11 71.2 60 61.7
Gohir.D05G301800 Gossypium hirsutum HOM05D002081 ORTHO05D002088 3.9e-11 70.9 62 64.5
TAR636G1215 Trochodendron aralioides HOM05D002081 ORTHO05D002088 5.1e-11 70.5 60 63.3
TAR636G1286 Trochodendron aralioides HOM05D002081 ORTHO05D002088 5.1e-11 70.5 60 63.3
MD01G1140300 Malus domestica HOM05D002081 ORTHO05D002088 1.1e-10 69.3 62 66.1
RcHm_v2.0_Chr1g0368591 Rosa chinensis HOM05D002081 ORTHO05D002088 1.5e-10 68.9 63 61.9
Sc10g0001880 Simmondsia chinensis HOM05D002081 ORTHO05D002088 1.9e-10 68.6 58 60.3
CsaV3_6G001420 Cucumis sativus L. HOM05D002081 ORTHO05D002088 2.5e-10 68.2 62 62.9
Rhsim09G0168000 Rhododendron simsii HOM05D002081 ORTHO05D002088 2.5e-10 68.2 59 61.0
Rhsim09G0168900 Rhododendron simsii HOM05D002081 ORTHO05D002088 2.5e-10 68.2 59 61.0
THA.LOC104808815 Tarenaya hassleriana HOM05D002081 ORTHO05D002088 2.5e-10 68.2 61 63.9
Aqoxy1G00829 Aquilegia oxysepala HOM05D002081 ORTHO05D002088 3.3e-10 67.8 58 65.5
COL.COLO4_25522 Corchorus olitorius HOM05D002081 ORTHO05D002088 3.3e-10 67.8 71 53.5
CSS0002569 Camellia sinensis var. sinensis HOM05D002081 ORTHO05D002088 5.6e-10 67.0 62 61.3
Duzib106G0506 Durio zibethinus HOM05D002081 ORTHO05D002088 5.6e-10 67.0 60 61.7
Rhsim03G0136700 Rhododendron simsii HOM05D002081 ORTHO05D002088 5.6e-10 67.0 60 60.0
MELO3C008246.2 Cucumis melo HOM05D002081 ORTHO05D002088 7.3e-10 66.6 62 59.7
Nn2g11249 Nelumbo nucifera HOM05D002081 ORTHO05D002088 9.5e-10 66.2 56 60.7
Potri.010G198300 Populus trichocarpa HOM05D002081 ORTHO05D002088 9.5e-10 66.2 60 61.7
EL10Ac2g04688 Beta vulgaris HOM05D002081 ORTHO05D002088 1.2e-09 65.9 60 56.7
CANSAT64G2080 Cannabis sativa HOM05D002081 ORTHO05D002088 1.2e-09 65.9 61 62.3
PGR142G4126 Punica granatum HOM05D002081 ORTHO05D002088 1.6e-09 65.5 60 60.0
CARHR134690 Cardamine hirsuta HOM05D002081 ORTHO05D002088 2.1e-09 65.1 66 59.1
MBI14_g09011_MAGBIO Magnolia biondii HOM05D002081 ORTHO05D002088 3.6e-09 64.3 58 55.2
Nitab4.5_0008497g0020 Nicotiana tabacum HOM05D002081 ORTHO05D002088 3.6e-09 64.3 66 54.5
SalBow6G3204 Salvia bowleyana HOM05D002081 ORTHO05D002088 3.6e-09 64.3 60 53.3
SalBow6G3476 Salvia bowleyana HOM05D002081 ORTHO05D002088 3.6e-09 64.3 60 53.3
Cc02_g07330 Coffea canephora HOM05D002081 ORTHO05D002088 6.2e-09 63.5 54 59.3
Duzib106G1433 Durio zibethinus HOM05D002081 ORTHO05D002088 6.2e-09 63.5 62 59.7
Duzib114G0689 Durio zibethinus HOM05D002081 ORTHO05D002088 6.2e-09 63.5 66 59.1
Glyma.14G065500 Glycine max HOM05D002081 ORTHO05D002088 6.2e-09 63.5 60 53.3
Sed0012888 Sechium edule HOM05D002081 ORTHO05D002088 8.1e-09 63.2 61 57.4
PGSC0003DMG400027135 Solanum tuberosum HOM05D002081 ORTHO05D002088 8.1e-09 63.2 57 56.1
VMungo0647G2156 Vigna mungo HOM05D002081 ORTHO05D002088 8.1e-09 63.2 57 56.1
Sopen05g031450 Solanum pennellii HOM05D002081 ORTHO05D002088 1.1e-08 62.8 57 56.1
BraA04t18484Z Brassica rapa HOM05D002081 ORTHO05D002088 1.4e-08 62.4 66 51.5
Duzib106G1704 Durio zibethinus HOM05D002081 ORTHO05D002088 1.4e-08 62.4 62 59.7
Sp4g22090 Schrenkiella parvula HOM05D002081 ORTHO05D002088 1.4e-08 62.4 66 57.6
Solyc05g052930.3 Solanum lycopersicum HOM05D002081 ORTHO05D002088 1.4e-08 62.4 57 56.1
Aa31LG5G19810 Aethionema arabicum HOM05D002081 ORTHO05D002088 1.8e-08 62.0 66 54.5
C04p67620 Brassica napus HOM05D002081 ORTHO05D002088 2.3e-08 61.6 66 50.0
BolC4t28261H Brassica oleracea HOM05D002081 ORTHO05D002088 2.3e-08 61.6 66 50.0
Carub.0004s2191 Capsella rubella HOM05D002081 ORTHO05D002088 2.3e-08 61.6 66 56.1
Duzib106G0565 Durio zibethinus HOM05D002081 ORTHO05D002088 2.3e-08 61.6 62 58.1
MSTRG.261 Avicennia marina HOM05D002081 ORTHO05D002088 3.1e-08 61.2 58 53.4
arahy.Tifrunner.gnm1.ann1.W8JJXT Arachis hypogaea HOM05D002081 ORTHO05D002088 4.0e-08 60.8 59 54.2
A04p30240 Brassica napus HOM05D002081 ORTHO05D002088 4.0e-08 60.8 66 50.0
Glyma.02G251200 Glycine max HOM05D002081 ORTHO05D002088 4.0e-08 60.8 60 53.3
MD07G1204600 Malus domestica HOM05D002081 ORTHO05D002088 4.0e-08 60.8 62 59.7
arahy.Tifrunner.gnm1.ann1.YTA3II Arachis hypogaea HOM05D002081 ORTHO05D002088 5.2e-08 60.5 59 54.2
AT2G39805 Arabidopsis thaliana HOM05D002081 ORTHO05D002088 6.8e-08 60.1 66 54.5
Ah.16g102690 Amaranthus hybridus HOM05D001947 ORTHO05D002440 1.2e-07 59.3 58 58.6
AL4G37350 Arabidopsis lyrata HOM05D002081 ORTHO05D002088 1.5e-07 58.9 67 53.7
AUR62040688 Chenopodium quinoa HOM05D002081 ORTHO05D002088 1.5e-07 58.9 60 53.3
BcaB01g03572 Brassica carinata HOM05D002081 ORTHO05D002088 2.0e-07 58.5 67 53.7
Ca_05907_v3 Cicer arietinum L. HOM05D002081 ORTHO05D002088 2.0e-07 58.5 63 52.4
PSO339G3649 Papaver somniferum HOM05D002081 ORTHO05D002088 2.0e-07 58.5 64 56.2
PSO384G4711 Papaver somniferum HOM05D002081 ORTHO05D002088 2.0e-07 58.5 64 56.2
Sabra08G0044400 Salix brachista HOM05D002081 ORTHO05D002088 2.6e-07 58.2 61 59.0
SGA_v2.0_scaffold2G00987 Striga asiatica HOM05D002081 ORTHO05D002088 2.6e-07 58.2 60 53.3
TPR.G25857 Trifolium pratense HOM05D002081 ORTHO05D002088 2.6e-07 58.2 62 50.0
Phvul.001G237000 Phaseolus vulgaris HOM05D002081 ORTHO05D002088 3.4e-07 57.8 59 52.5
Phvul.008G230200 Phaseolus vulgaris HOM05D002081 ORTHO05D002088 5.8e-07 57.0 60 48.3
Peaxi162Scf00164g01416 Petunia axillaris HOM05D002081 ORTHO05D002088 7.6e-07 56.6 57 56.1
Psat5g128720 Pisum sativum HOM05D002081 ORTHO05D002088 9.9e-07 56.2 63 50.8
Medtr5g081040 Medicago truncatula HOM05D002081 ORTHO05D002088 1.3e-06 55.8 63 54.0
MSTRG.8286 Avicennia marina HOM05D002081 ORTHO05D002088 1.7e-06 55.5 60 48.3
CDE03G0226 Ceratophyllum demersum HOM05D002081 ORTHO05D002088 2.2e-06 55.1 57 50.9
CDE04G2263 Ceratophyllum demersum HOM05D001947 ORTHO05D002440 2.2e-06 55.1 57 49.1
AUR62012147 Chenopodium quinoa HOM05D002081 ORTHO05D002088 2.2e-06 55.1 60 51.7
Hund16051 Selenicereus undatus HOM05D002081 ORTHO05D002088 2.2e-06 55.1 58 48.3
HanXRQChr08g0221211 Helianthus annuus HOM05D002081 ORTHO05D002088 2.9e-06 54.7 63 52.4
Lsat_1_v5_gn_8_14680 Lactuca sativa HOM05D002081 ORTHO05D002088 2.9e-06 54.7 60 53.3
Medtr3g069150 Medicago truncatula HOM05D002081 ORTHO05D002088 2.9e-06 54.7 62 48.4
Medtr3g069170 Medicago truncatula HOM05D002081 ORTHO05D002088 2.9e-06 54.7 62 48.4
Hund13800 Selenicereus undatus HOM05D002081 ORTHO05D002088 4.9e-06 53.9 56 57.1
arahy.Tifrunner.gnm1.ann1.KXA9QZ Arachis hypogaea HOM05D002081 ORTHO05D002088 6.4e-06 53.5 48 56.2


User provided reference genes

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