Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc76.12 Carica papaya HOM05D005566 ORTHO05D007534 6.9e-47 190.3 94 100.0
Gohir.A12G226600 Gossypium hirsutum HOM05D005566 ORTHO05D007534 4.8e-24 114.4 64 84.4
Gorai.008G245200 Gossypium raimondii HOM05D005566 ORTHO05D007534 4.8e-24 114.4 64 84.4
GSVIVG01019806001 Vitis vinifera HOM05D005566 ORTHO05D007534 4.8e-24 114.4 64 84.4
Gohir.D12G229000 Gossypium hirsutum HOM05D005566 ORTHO05D007534 6.2e-24 114.0 64 82.8
Nn6g33532 Nelumbo nucifera HOM05D005566 ORTHO05D007534 1.1e-23 113.2 60 90.0
CANSAT21G2631 Cannabis sativa HOM05D005566 ORTHO05D007534 1.4e-23 112.8 64 82.8
TWI81G0928 Tripterygium wilfordii HOM05D005566 ORTHO05D007534 1.8e-23 112.5 64 82.8
PGR031G0987 Punica granatum HOM05D005566 ORTHO05D007534 2.4e-23 112.1 64 79.7
COL.COLO4_34426 Corchorus olitorius HOM05D005566 ORTHO05D007534 3.1e-23 111.7 64 81.2
CsaV3_5G003020 Cucumis sativus L. HOM05D005566 ORTHO05D007534 3.1e-23 111.7 65 80.0
Manes.02G024200 Manihot esculenta HOM05D005566 ORTHO05D007534 3.1e-23 111.7 64 79.7
Solyc08g007950.3 Solanum lycopersicum HOM05D005566 ORTHO05D007534 3.1e-23 111.7 64 81.2
Sopen08g003840 Solanum pennellii HOM05D005566 ORTHO05D007534 3.1e-23 111.7 64 81.2
Haze_08893 Corylus avellana HOM05D005566 ORTHO05D007534 4.0e-23 111.3 60 86.7
MBI17_g08175_MAGBIO Magnolia biondii HOM05D005566 ORTHO05D004184 4.0e-23 111.3 60 88.3
Oeu049553.1 Olea europaea HOM05D005566 ORTHO05D007534 4.0e-23 111.3 60 86.7
Ca_17550_v3 Cicer arietinum L. HOM05D005566 ORTHO05D007534 5.3e-23 110.9 61 83.6
Eucgr.D01874 Eucalyptus grandis HOM05D005566 ORTHO05D007534 5.3e-23 110.9 66 75.8
Atru.chr9.204 Acer truncatum HOM05D005566 ORTHO05D007534 6.9e-23 110.5 60 85.0
MSTRG.11999 Avicennia marina HOM05D005566 ORTHO05D007534 6.9e-23 110.5 60 86.7
DCAR_008409 Daucus carota HOM05D005566 ORTHO05D007534 6.9e-23 110.5 65 78.5
Potri.003G124200 Populus trichocarpa HOM05D005566 ORTHO05D007534 6.9e-23 110.5 60 85.0
CiPaw.12G095300 Carya illinoinensis HOM05D005566 ORTHO05D007534 9.0e-23 110.2 60 85.0
MELO3C005651.2 Cucumis melo HOM05D005566 ORTHO05D007534 9.0e-23 110.2 64 79.7
Nitab4.5_0004032g0020 Nicotiana tabacum HOM05D005566 ORTHO05D007534 9.0e-23 110.2 64 79.7
CAN.G792.89 Capsicum annuum HOM05D005566 ORTHO05D007534 1.2e-22 109.8 64 79.7
CDE08G0014 Ceratophyllum demersum HOM05D005566 ORTHO05D007534 1.2e-22 109.8 60 85.0
Duzib084G0536 Durio zibethinus HOM05D005566 ORTHO05D007534 1.2e-22 109.8 60 85.0
Duzib205G0430 Durio zibethinus HOM05D005566 ORTHO05D007534 1.2e-22 109.8 60 86.7
QL12p018066 Quercus lobata HOM05D005566 ORTHO05D007534 1.2e-22 109.8 60 85.0
Sabra03G0087800 Salix brachista HOM05D005566 ORTHO05D007534 1.2e-22 109.8 59 86.4
SGA_v2.0_scaffold253G45116 Striga asiatica HOM05D005566 ORTHO05D007534 1.2e-22 109.8 60 85.0
BcaC05g25112 Brassica carinata HOM05D005566 ORTHO05D007534 1.5e-22 109.4 64 78.1
BcaC05g25155 Brassica carinata HOM05D005566 ORTHO05D007534 1.5e-22 109.4 64 78.1
A06p08880 Brassica napus HOM05D005566 ORTHO05D007534 1.5e-22 109.4 64 78.1
C05p10500 Brassica napus HOM05D005566 ORTHO05D007534 1.5e-22 109.4 64 78.1
BolC5t29796H Brassica oleracea HOM05D005566 ORTHO05D007534 1.5e-22 109.4 64 78.1
BraA06t24082Z Brassica rapa HOM05D005566 ORTHO05D007534 1.5e-22 109.4 64 78.1
Nitab4.5_0001200g0190 Nicotiana tabacum HOM05D005566 ORTHO05D007534 1.5e-22 109.4 64 78.1
Sc22g0000210 Simmondsia chinensis HOM05D005566 ORTHO05D007534 1.5e-22 109.4 60 81.7
arahy.Tifrunner.gnm1.ann1.H32RIC Arachis hypogaea HOM05D005566 ORTHO05D007534 2.0e-22 109.0 63 81.0
Carub.0001s1252 Capsella rubella HOM05D005566 ORTHO05D007534 2.0e-22 109.0 66 75.8
Cfa012142 Carpinus fangiana HOM05D005566 ORTHO05D007534 2.0e-22 109.0 60 85.0
THA.LOC104809401 Tarenaya hassleriana HOM05D005566 ORTHO05D007534 2.0e-22 109.0 64 76.6
Actinidia02022 Actinidia chinensis HOM05D005566 ORTHO05D007534 2.6e-22 108.6 60 83.3
CSS0044378 Camellia sinensis var. sinensis HOM05D005566 ORTHO05D007534 2.6e-22 108.6 64 79.7
Sed0016580 Sechium edule HOM05D005566 ORTHO05D007534 2.6e-22 108.6 60 85.0
arahy.Tifrunner.gnm1.ann1.8RU08H Arachis hypogaea HOM05D005566 ORTHO05D007534 3.4e-22 108.2 61 82.0
ClCG01G002940 Citrullus lanatus HOM05D005566 ORTHO05D007534 3.4e-22 108.2 64 79.7
SalBow5G3774 Salvia bowleyana HOM05D005566 ORTHO05D007534 3.4e-22 108.2 60 81.7
AT1G12800 Arabidopsis thaliana HOM05D005566 ORTHO05D007534 4.5e-22 107.8 64 78.1
CARHR013110 Cardamine hirsuta HOM05D005566 ORTHO05D007534 4.5e-22 107.8 64 78.1
Thhalv10006889m.g Eutrema salsugineum HOM05D005566 ORTHO05D007534 4.5e-22 107.8 64 78.1
FvH4_5g01950 Fragaria vesca HOM05D005566 ORTHO05D007534 4.5e-22 107.8 60 86.7
FAN04G1912 Fragaria x ananassa HOM05D005566 ORTHO05D007534 4.5e-22 107.8 60 86.7
FAN08G2943 Fragaria x ananassa HOM05D005566 ORTHO05D007534 4.5e-22 107.8 60 86.7
FAN18G1004 Fragaria x ananassa HOM05D005566 ORTHO05D007534 4.5e-22 107.8 60 86.7
TPR.G12738 Trifolium pratense HOM05D005566 ORTHO05D007534 4.5e-22 107.8 61 83.6
vmacro11305 Vaccinium macrocarpon HOM05D005566 ORTHO05D007534 4.5e-22 107.8 63 81.0
Ciclev10024399m.g Citrus clementina HOM05D005566 ORTHO05D007534 5.8e-22 107.5 60 80.0
Cc08_g14350 Coffea canephora HOM05D005566 ORTHO05D007534 5.8e-22 107.5 64 76.6
Migut.A00792 Erythranthe guttata HOM05D005566 ORTHO05D007534 5.8e-22 107.5 68 75.0
RcHm_v2.0_Chr7g0198431 Rosa chinensis HOM05D005566 ORTHO05D007534 5.8e-22 107.5 60 85.0
THA.LOC104809657 Tarenaya hassleriana HOM05D005566 ORTHO05D007534 5.8e-22 107.5 64 76.6
Aqoxy5G04022 Aquilegia oxysepala HOM05D005566 ORTHO05D007534 7.6e-22 107.1 64 76.6
Peaxi162Scf00102g01550 Petunia axillaris HOM05D005566 ORTHO05D007534 7.6e-22 107.1 64 76.6
Actinidia14546 Actinidia chinensis HOM05D005566 ORTHO05D007534 1.0e-21 106.7 60 81.7
TAR629G1018 Trochodendron aralioides HOM05D005566 ORTHO05D007534 1.0e-21 106.7 60 85.0
AL1G24430 Arabidopsis lyrata HOM05D005566 ORTHO05D007534 1.3e-21 106.3 64 76.6
FAN13G1151 Fragaria x ananassa HOM05D005566 ORTHO05D007534 1.3e-21 106.3 60 85.0
Medtr8g097290 Medicago truncatula HOM05D005566 ORTHO05D007534 1.3e-21 106.3 60 83.3
Prupe.5G095700 Prunus persica HOM05D005566 ORTHO05D007534 1.3e-21 106.3 60 85.0
Hma1.2p1_1943F.1_g308460 Hydrangea macrophylla HOM05D005566 ORTHO05D007534 1.7e-21 105.9 60 83.3
Ah.12g057290 Amaranthus hybridus HOM05D005566 ORTHO05D007534 2.2e-21 105.5 64 71.9
ATR0680G084 Amborella trichopoda HOM05D005566 ORTHO05D007534 2.2e-21 105.5 73 67.1
PSO782G1537 Papaver somniferum HOM05D005566 ORTHO05D007534 2.2e-21 105.5 60 81.7
Sp1g11360 Schrenkiella parvula HOM05D005566 ORTHO05D007534 2.2e-21 105.5 64 76.6
Phvul.002G287600 Phaseolus vulgaris HOM05D005566 ORTHO05D007534 3.8e-21 104.8 60 78.3
SalBow6G1897 Salvia bowleyana HOM05D005566 ORTHO05D007534 3.8e-21 104.8 60 78.3
VMungo0251G1600 Vigna mungo HOM05D005566 ORTHO05D007534 3.8e-21 104.8 60 80.0
Aa31LG1G1950 Aethionema arabicum HOM05D005566 ORTHO05D007534 4.9e-21 104.4 67 73.1
Lsat_1_v5_gn_6_5820 Lactuca sativa HOM05D005566 ORTHO05D007534 4.9e-21 104.4 65 70.8
Lalb_Chr09g0333291 Lupinus albus HOM05D005566 ORTHO05D007534 4.9e-21 104.4 64 75.0
PSO063G1293 Papaver somniferum HOM05D005566 ORTHO05D007534 6.5e-21 104.0 60 80.0
Psat7g035520 Pisum sativum HOM05D005566 ORTHO05D007534 6.5e-21 104.0 74 68.9
Rhsim02G0223600 Rhododendron simsii HOM05D005566 ORTHO05D007534 6.5e-21 104.0 60 81.7
Glyma.05G205651 Glycine max HOM05D005566 ORTHO05D007534 1.1e-20 103.2 60 76.7
Glyma.08G012600 Glycine max HOM05D005566 ORTHO05D007534 1.1e-20 103.2 60 76.7
MD06G1077900 Malus domestica HOM05D005566 ORTHO05D007534 1.1e-20 103.2 60 83.3
EL10Ac5g12770 Beta vulgaris HOM05D005566 ORTHO05D007534 1.4e-20 102.8 60 76.7
Lj4g0021136 Lotus japonicus HOM05D005566 ORTHO05D007534 1.4e-20 102.8 60 80.0
ECA233G6007 Erigeron canadensis HOM05D005566 ORTHO05D007534 4.2e-20 101.3 65 70.8
Lj2A187T86 Lonicera japonica HOM05D005566 ORTHO05D007534 4.2e-20 101.3 60 78.3
unitig_744.g24358 Utricularia gibba HOM05D005566 ORTHO05D007534 5.5e-20 100.9 60 76.7
HanXRQChr02g0048911 Helianthus annuus HOM05D005566 ORTHO05D007534 7.1e-20 100.5 65 67.7
AUR62010607 Chenopodium quinoa HOM05D005566 ORTHO05D007534 1.2e-19 99.8 60 73.3
DCAR_004649 Daucus carota HOM05D005566 ORTHO05D007534 2.1e-19 99.0 64 70.3
AUR62017248 Chenopodium quinoa HOM05D005566 ORTHO05D007534 2.7e-19 98.6 60 73.3
Lsat_1_v5_gn_3_7621 Lactuca sativa HOM05D005566 ORTHO05D007534 5.1e-18 94.4 64 68.8
HanXRQChr06g0165791 Helianthus annuus HOM05D005566 ORTHO05D007534 4.3e-17 91.3 62 71.0
ECA246G0114 Erigeron canadensis HOM05D005566 ORTHO05D007534 9.7e-17 90.1 63 68.3
Hund11490 Selenicereus undatus HOM05D005566 ORTHO05D007534 8.2e-16 87.0 60 63.3
Zm00001eb229900 Zea mays HOM05D005566 ORTHO05D007534 9.0e-15 83.6 64 56.2
Os02g0115600 Oryza sativa ssp. japonica HOM05D005566 ORTHO05D007534 4.5e-14 81.3 64 56.2
Thecc.03G275300 Theobroma cacao HOM05D005566 ORTHO05D007534 1.2e-11 73.2 50 70.0
BcaB03g13169 Brassica carinata HOM05D000776 ORTHO05D001624 1.4e-10 69.7 86 46.5
Pp3c9_24810 Physcomitrium patens HOM05D005566 ORTHO05D007534 1.2e-06 56.6 53 49.1
Pp3c15_23440 Physcomitrium patens HOM05D005566 ORTHO05D007534 2.0e-06 55.8 57 47.4


User provided reference genes

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