Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc71.4 Carica papaya HOM05D003838 ORTHO05D004444 3.2e-66 255.0 132 100.0
Prupe.3G140200 Prunus persica HOM05D003838 ORTHO05D004444 4.8e-38 161.4 127 60.6
Thecc.04G179800 Theobroma cacao HOM05D003838 ORTHO05D004444 4.8e-38 161.4 126 61.9
Lj9P420T34 Lonicera japonica HOM05D003838 ORTHO05D004444 8.2e-38 160.6 126 58.7
Sed0023259 Sechium edule HOM05D003838 ORTHO05D004444 1.1e-37 160.2 126 60.3
Actinidia26441 Actinidia chinensis HOM05D003838 ORTHO05D004444 1.4e-37 159.8 126 57.9
Ciclev10022331m.g Citrus clementina HOM05D003838 ORTHO05D004444 5.3e-37 157.9 126 58.7
Duzib212G0889 Durio zibethinus HOM05D003838 ORTHO05D004444 6.9e-37 157.5 126 61.1
Lalb_Chr10g0091981 Lupinus albus HOM05D003838 ORTHO05D004444 6.9e-37 157.5 126 61.1
Atru.chr3.1491 Acer truncatum HOM05D003838 ORTHO05D004444 1.2e-36 156.8 126 58.7
CSS0031035 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 2.6e-36 155.6 126 57.9
CiPaw.01G100400 Carya illinoinensis HOM05D003838 ORTHO05D004444 3.4e-36 155.2 126 57.1
Haze_01511 Corylus avellana HOM05D003838 ORTHO05D004444 3.4e-36 155.2 125 57.6
Cfa015168 Carpinus fangiana HOM05D003838 ORTHO05D004444 4.5e-36 154.8 126 57.1
Manes.03G131800 Manihot esculenta HOM05D003838 ORTHO05D004444 4.5e-36 154.8 126 57.9
TAR376G0719 Trochodendron aralioides HOM05D003838 ORTHO05D004444 7.6e-36 154.1 126 57.1
Gohir.A10G137200 Gossypium hirsutum HOM05D003838 ORTHO05D004444 1.0e-35 153.7 126 60.3
Gorai.011G142700 Gossypium raimondii HOM05D003838 ORTHO05D004444 1.3e-35 153.3 126 60.3
CSS0022226 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.7e-35 152.9 126 57.1
CsaV3_6G002030 Cucumis sativus L. HOM05D003838 ORTHO05D004444 2.9e-35 152.1 126 55.6
arahy.Tifrunner.gnm1.ann1.0B6HPH Arachis hypogaea HOM05D003838 ORTHO05D004444 6.5e-35 151.0 126 55.6
CSS0030021 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 6.5e-35 151.0 126 57.1
CANSAT78G1384 Cannabis sativa HOM05D003838 ORTHO05D004444 6.5e-35 151.0 126 57.1
Lalb_Chr17g0336351 Lupinus albus HOM05D003838 ORTHO05D004444 1.1e-34 150.2 125 58.4
Oeu016385.1 Olea europaea HOM05D003838 ORTHO05D004444 1.4e-34 149.8 127 56.7
arahy.Tifrunner.gnm1.ann1.536K79 Arachis hypogaea HOM05D003838 ORTHO05D004444 2.5e-34 149.1 126 54.8
Nn1g08615 Nelumbo nucifera HOM05D003838 ORTHO05D004444 2.5e-34 149.1 126 57.9
GSVIVG01022417001 Vitis vinifera HOM05D003838 ORTHO05D004444 3.2e-34 148.7 126 55.6
MD13G1208600 Malus domestica HOM05D003838 ORTHO05D004444 4.2e-34 148.3 126 54.0
Manes.15G070000 Manihot esculenta HOM05D003838 ORTHO05D004444 4.2e-34 148.3 126 56.3
THA.LOC104826203 Tarenaya hassleriana HOM05D003838 ORTHO05D004444 5.5e-34 147.9 126 58.7
ClCG08G004710 Citrullus lanatus HOM05D003838 ORTHO05D004444 7.2e-34 147.5 126 57.9
MSTRG.23130 Avicennia marina HOM05D003838 ORTHO05D004444 9.3e-34 147.1 129 54.3
COL.COLO4_07664 Corchorus olitorius HOM05D003838 ORTHO05D004444 1.2e-33 146.7 127 58.3
Prupe.1G032600 Prunus persica HOM05D003838 ORTHO05D004444 1.2e-33 146.7 126 54.8
Sabra17G0019500 Salix brachista HOM05D003838 ORTHO05D004444 1.6e-33 146.4 126 54.8
Ah.11g050950 Amaranthus hybridus HOM05D003838 ORTHO05D004444 2.1e-33 146.0 126 55.6
MBI16_g18329_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 2.1e-33 146.0 126 54.0
Aa31LG1G8370 Aethionema arabicum HOM05D003838 ORTHO05D004444 2.7e-33 145.6 126 54.8
CDE06G0074 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 2.7e-33 145.6 127 52.0
Cc07_g02090 Coffea canephora HOM05D003838 ORTHO05D004444 2.7e-33 145.6 127 53.5
FvH4_4g03700 Fragaria vesca HOM05D003838 ORTHO05D004444 2.7e-33 145.6 126 55.6
TAR629G1244 Trochodendron aralioides HOM05D003838 ORTHO05D004444 2.7e-33 145.6 131 54.2
Nitab4.5_0002162g0060 Nicotiana tabacum HOM05D003838 ORTHO05D004444 4.6e-33 144.8 127 54.3
SalBow7G4199 Salvia bowleyana HOM05D003838 ORTHO05D004444 4.6e-33 144.8 127 53.5
SGA_v2.0_scaffold25G10841 Striga asiatica HOM05D003838 ORTHO05D004444 4.6e-33 144.8 129 51.9
Nitab4.5_0002208g0080 Nicotiana tabacum HOM05D003838 ORTHO05D004444 6.1e-33 144.4 127 54.3
Hma1.2p1_0002F.1_g002170 Hydrangea macrophylla HOM05D003838 ORTHO05D004444 7.9e-33 144.1 126 52.4
FAN12G0299 Fragaria x ananassa HOM05D000189 ORTHO05D000474 1.0e-32 143.7 123 56.1
SGA_v2.0_scaffold90G27933 Striga asiatica HOM05D003838 ORTHO05D004444 1.0e-32 143.7 126 53.2
Potri.017G030000 Populus trichocarpa HOM05D003838 ORTHO05D004444 1.3e-32 143.3 126 54.0
Migut.I00010 Erythranthe guttata HOM05D003838 ORTHO05D004444 1.8e-32 142.9 126 53.2
FAN17G3077 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.8e-32 142.9 126 54.8
EL10Ac5g10613 Beta vulgaris HOM05D003838 ORTHO05D004444 2.3e-32 142.5 127 54.3
BolC5t29205H Brassica oleracea HOM05D003838 ORTHO05D004444 2.3e-32 142.5 126 53.2
Cc06_g03220 Coffea canephora HOM05D003838 ORTHO05D004444 2.3e-32 142.5 128 52.3
Psat5g216120 Pisum sativum HOM05D003838 ORTHO05D004444 2.3e-32 142.5 126 57.1
CSS0020761 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 3.0e-32 142.1 126 54.0
AUR62008103 Chenopodium quinoa HOM05D003838 ORTHO05D004444 3.0e-32 142.1 126 54.0
Ca_14316_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 3.0e-32 142.1 126 55.6
FAN22G1473 Fragaria x ananassa HOM05D003838 ORTHO05D004444 3.0e-32 142.1 126 54.8
RcHm_v2.0_Chr4g0393311 Rosa chinensis HOM05D003838 ORTHO05D004444 3.0e-32 142.1 126 54.0
Sp1g04800 Schrenkiella parvula HOM05D003838 ORTHO05D004444 3.0e-32 142.1 126 52.4
C05p04300 Brassica napus HOM05D003838 ORTHO05D004444 5.1e-32 141.4 126 52.4
AUR62028681 Chenopodium quinoa HOM05D003838 ORTHO05D004444 5.1e-32 141.4 126 53.2
Peaxi162Scf00970g00146 Petunia axillaris HOM05D003838 ORTHO05D004444 5.1e-32 141.4 127 52.8
TWI38G0658 Tripterygium wilfordii HOM05D003838 ORTHO05D004444 5.1e-32 141.4 131 53.4
Nitab4.5_0000515g0040 Nicotiana tabacum HOM05D003838 ORTHO05D004444 6.7e-32 141.0 127 52.8
RcHm_v2.0_Chr4g0390901 Rosa chinensis HOM05D003838 ORTHO05D004444 6.7e-32 141.0 126 54.0
RcHm_v2.0_Chr4g0390961 Rosa chinensis HOM05D003838 ORTHO05D004444 6.7e-32 141.0 126 54.0
SalBow5G3784 Salvia bowleyana HOM05D003838 ORTHO05D004444 6.7e-32 141.0 127 51.2
AL1G15920 Arabidopsis lyrata HOM05D003838 ORTHO05D004444 1.1e-31 140.2 126 54.0
Glyma.11G081600 Glycine max HOM05D003838 ORTHO05D004444 1.9e-31 139.4 126 54.8
MBI16_g18328_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 1.9e-31 139.4 126 51.6
VMungo1080G0233 Vigna mungo HOM05D003838 ORTHO05D004444 1.9e-31 139.4 126 54.0
PGSC0003DMG400029841 Solanum tuberosum HOM05D003838 ORTHO05D004444 2.5e-31 139.0 127 54.3
vmacro23050 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 2.5e-31 139.0 126 50.0
Aqoxy7G02681 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 4.3e-31 138.3 127 51.2
Peaxi162Scf00201g00019 Petunia axillaris HOM05D003838 ORTHO05D004444 4.3e-31 138.3 127 51.2
TPR.G3853 Trifolium pratense HOM05D003838 ORTHO05D004444 7.4e-31 137.5 126 54.8
CARHR005500 Cardamine hirsuta HOM05D003838 ORTHO05D004444 9.7e-31 137.1 126 51.6
Medtr3g030930 Medicago truncatula HOM05D003838 ORTHO05D004444 9.7e-31 137.1 126 54.0
PGR083G1767 Punica granatum HOM05D003838 ORTHO05D004444 9.7e-31 137.1 127 53.5
Solyc10g079580.2 Solanum lycopersicum HOM05D003838 ORTHO05D004444 9.7e-31 137.1 127 52.8
Rhsim05G0049100 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.7e-30 136.3 126 50.8
A10p04640 Brassica napus HOM05D003838 ORTHO05D004444 2.2e-30 136.0 126 51.6
BraA10t42729Z Brassica rapa HOM05D003838 ORTHO05D004444 2.2e-30 136.0 126 51.6
vmacro01004 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 2.2e-30 136.0 122 50.8
Medtr3g021420 Medicago truncatula HOM05D003838 ORTHO05D004444 2.8e-30 135.6 126 53.2
Sopen10g030220 Solanum pennellii HOM05D003838 ORTHO05D004444 2.8e-30 135.6 127 52.0
DCAR_006535 Daucus carota HOM05D003838 ORTHO05D004444 3.7e-30 135.2 126 50.8
Thhalv10008811m.g Eutrema salsugineum HOM05D003838 ORTHO05D004444 3.7e-30 135.2 126 52.4
FvH4_4g02890 Fragaria vesca HOM05D003838 ORTHO05D004444 3.7e-30 135.2 122 54.9
Medtr7g090650 Medicago truncatula HOM05D003838 ORTHO05D004444 6.3e-30 134.4 128 53.9
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 8.2e-30 134.0 126 50.8
RhsimUnG0118200 Rhododendron simsii HOM05D003838 ORTHO05D004444 8.2e-30 134.0 126 49.2
Sc20g0000750 Simmondsia chinensis HOM05D003838 ORTHO05D004444 8.2e-30 134.0 126 50.0
Ca_24199_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 1.1e-29 133.7 123 53.7
FAN12G3313 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.1e-29 133.7 122 54.1
Eucgr.A00080 Eucalyptus grandis HOM05D003838 ORTHO05D004444 1.4e-29 133.3 131 51.1
Rhsim09G0030300 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.4e-29 133.3 126 50.0
Phvul.005G032200 Phaseolus vulgaris HOM05D003838 ORTHO05D004444 1.8e-29 132.9 126 51.6
AT1G05970 Arabidopsis thaliana HOM05D003838 ORTHO05D004444 2.4e-29 132.5 126 50.0
Lj3g0022900 Lotus japonicus HOM05D003838 ORTHO05D004444 2.4e-29 132.5 126 52.4
ECA246G3227 Erigeron canadensis HOM05D003838 ORTHO05D004444 3.1e-29 132.1 127 48.8
Ca_25969_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 4.1e-29 131.7 126 51.6
PSO063G7239 Papaver somniferum HOM05D003838 ORTHO05D004444 4.1e-29 131.7 126 50.0
PGSC0003DMG400002948 Solanum tuberosum HOM05D003838 ORTHO05D004444 5.3e-29 131.3 127 48.0
Ca_24671_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 6.9e-29 131.0 130 50.0
QL03p038958 Quercus lobata HOM05D003838 ORTHO05D004444 9.1e-29 130.6 126 48.4
MELO3C008320.2 Cucumis melo HOM05D003838 ORTHO05D004444 1.2e-28 130.2 173 40.5
ATR0665G504 Amborella trichopoda HOM05D003838 ORTHO05D004444 1.5e-28 129.8 126 51.6
CDE02G1933 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.5e-28 129.8 126 46.8
PSO210G5426 Papaver somniferum HOM05D003838 ORTHO05D004444 2.0e-28 129.4 127 51.2
Carub.0001s0533 Capsella rubella HOM05D003838 ORTHO05D004444 2.6e-28 129.0 126 50.0
Lsat_1_v5_gn_2_85780 Lactuca sativa HOM05D003838 ORTHO05D004444 1.0e-27 127.1 112 53.6
PSO782G5029 Papaver somniferum HOM05D003838 ORTHO05D004444 1.0e-27 127.1 122 49.2
PSO832G2359 Papaver somniferum HOM05D003838 ORTHO05D004444 1.0e-27 127.1 123 51.2
Aqoxy7G02974 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 1.3e-27 126.7 118 53.4
Hund02940 Selenicereus undatus HOM05D003838 ORTHO05D004444 1.7e-27 126.3 126 48.4
AUR62011801 Chenopodium quinoa HOM05D003838 ORTHO05D004444 2.9e-27 125.6 126 50.0
Nitab4.5_0024579g0010 Nicotiana tabacum HOM05D003838 ORTHO05D004444 2.9e-27 125.6 127 50.4
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 3.8e-27 125.2 126 50.0
HanXRQChr16g0504861 Helianthus annuus HOM05D003838 ORTHO05D004444 3.8e-27 125.2 126 46.8
RcHm_v2.0_Chr4g0390871 Rosa chinensis HOM05D003838 ORTHO05D004444 3.8e-27 125.2 119 51.3
Hund09632 Selenicereus undatus HOM05D003838 ORTHO05D004444 6.5e-27 124.4 126 53.2
HanXRQChr16g0516761 Helianthus annuus HOM05D003838 ORTHO05D004444 8.5e-27 124.0 126 46.0
HanXRQChr10g0305171 Helianthus annuus HOM05D003838 ORTHO05D004444 1.4e-26 123.2 126 46.0
HanXRQChr01g0021151 Helianthus annuus HOM05D003838 ORTHO05D004444 3.2e-26 122.1 126 45.2
QL10p048766 Quercus lobata HOM05D003838 ORTHO05D004444 4.2e-26 121.7 129 46.5
Aqoxy285s002 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 5.5e-26 121.3 114 52.6
Nn5g28129 Nelumbo nucifera HOM05D003838 ORTHO05D004444 5.5e-26 121.3 116 50.0
SEGI_03408 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 5.5e-26 121.3 126 46.0
HanXRQChr02g0057691 Helianthus annuus HOM05D003838 ORTHO05D004444 7.2e-26 120.9 126 43.7
HanXRQChr14g0439271 Helianthus annuus HOM05D003838 ORTHO05D004444 9.4e-26 120.6 126 44.4
HanXRQChr16g0517051 Helianthus annuus HOM05D003838 ORTHO05D004444 1.2e-25 120.2 127 46.5
CARHR038440 Cardamine hirsuta HOM05D003838 ORTHO05D004444 1.6e-25 119.8 105 55.2
ECA238G0498 Erigeron canadensis HOM05D003838 ORTHO05D004444 3.6e-25 118.6 111 48.6
HanXRQChr12g0355781 Helianthus annuus HOM05D003838 ORTHO05D004444 4.7e-25 118.2 126 45.2
RcHm_v2.0_Chr4g0390851 Rosa chinensis HOM05D003838 ORTHO05D004444 1.0e-24 117.1 108 52.8
BcaC05g24315 Brassica carinata HOM05D003838 ORTHO05D004444 2.3e-24 115.9 126 47.6
HanXRQChr02g0057701 Helianthus annuus HOM05D003838 ORTHO05D004444 3.9e-24 115.2 126 45.2
unitig_750.g28470 Utricularia gibba HOM05D003838 ORTHO05D004444 6.7e-24 114.4 126 47.6
Sopen04g016270 Solanum pennellii HOM05D003838 ORTHO05D004444 3.3e-23 112.1 104 51.0
Gohir.D10G129400 Gossypium hirsutum HOM05D003838 ORTHO05D004444 9.7e-23 110.5 83 63.9
Zm00001eb304590 Zea mays HOM05D003838 ORTHO05D004444 9.7e-23 110.5 130 42.3
Os07g0256200 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 2.8e-22 109.0 126 40.5
Migut.L01638 Erythranthe guttata HOM05D003838 ORTHO05D004444 4.8e-22 108.2 126 42.9
Lj5P157T23 Lonicera japonica HOM05D003838 ORTHO05D004444 1.1e-21 107.1 83 57.8
Os09g0111800 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.4e-21 106.7 127 40.2
SEGI_13821 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 3.1e-21 105.5 126 42.1
Sp1g04950 Schrenkiella parvula HOM05D003838 ORTHO05D004444 2.6e-20 102.4 98 48.0
Os04g0689700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 3.4e-20 102.1 127 37.8
arahy.Tifrunner.gnm1.ann1.IZ4F9K Arachis hypogaea HOM05D003838 ORTHO05D004444 5.9e-20 101.3 126 41.3
Zm00001eb076310 Zea mays HOM05D003838 ORTHO05D004444 8.5e-19 97.4 126 36.5
Zm00001eb076930 Zea mays HOM05D003838 ORTHO05D004444 8.5e-19 97.4 126 36.5
CDE08G1258 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.4e-18 96.7 122 39.3
EL10As5g23534 Beta vulgaris HOM05D003838 ORTHO05D004444 1.2e-17 93.6 125 41.6
vmacro04174 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 6.1e-17 91.3 77 51.9
ATR0665G008 Amborella trichopoda HOM05D003838 ORTHO05D004444 5.2e-16 88.2 82 50.0
CDE08G0678 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 2.8e-14 82.4 65 55.4
Os02g0669700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 2.8e-14 82.4 127 35.4
FAN17G0891 Fragaria x ananassa HOM05D003838 ORTHO05D004444 3.7e-14 82.0 99 46.5
HPP92_001929 Vanilla planifolia HOM05D003838 ORTHO05D004444 2.2e-11 72.8 126 38.1
Solyc04g040053.1 Solanum lycopersicum HOM05D003838 ORTHO05D004444 3.2e-10 68.9 74 39.2
Solyc04g040010.3 Solanum lycopersicum HOM05D003838 ORTHO05D004444 1.2e-09 67.0 75 38.7
Actinidia06873 Actinidia chinensis HOM05D003838 ORTHO05D004444 2.0e-07 59.7 57 50.9
FAN12G1760 Fragaria x ananassa HOM05D003838 ORTHO05D004444 4.4e-07 58.5 107 37.4
Sopen04g016210 Solanum pennellii HOM05D003838 ORTHO05D004444 4.4e-07 58.5 48 58.3
FvH4_4g02900 Fragaria vesca HOM05D003838 ORTHO05D004444 2.8e-06 55.8 81 40.7
Rhsim12G0057800 Rhododendron simsii HOM05D003838 ORTHO05D004444 3.7e-06 55.5 103 35.0


User provided reference genes

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