Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc7.213 Carica papaya HOM05D003539 ORTHO05D004111 1.3e-41 172.6 85 100.0
COL.COLO4_16224 Corchorus olitorius HOM05D003539 ORTHO05D004111 6.7e-25 117.1 78 69.2
GSVIVG01026448001 Vitis vinifera HOM05D003539 ORTHO05D004111 1.5e-24 115.9 78 66.7
THA.LOC104814350 Tarenaya hassleriana HOM05D003539 ORTHO05D004111 1.9e-24 115.5 78 64.1
TWI79G1391 Tripterygium wilfordii HOM05D003539 ORTHO05D004111 1.9e-24 115.5 78 65.4
Aa31LG6G11830 Aethionema arabicum HOM05D003539 ORTHO05D004111 2.5e-24 115.2 78 64.1
Aa31LG10G6570 Aethionema arabicum HOM05D003539 ORTHO05D004111 3.3e-24 114.8 78 62.8
Eucgr.J02557 Eucalyptus grandis HOM05D003539 ORTHO05D004111 7.4e-24 113.6 78 66.7
Gohir.A02G120000 Gossypium hirsutum HOM05D003539 ORTHO05D004111 1.3e-23 112.8 78 65.4
Gohir.D03G066500 Gossypium hirsutum HOM05D003539 ORTHO05D004111 2.1e-23 112.1 78 65.4
Gorai.003G064600 Gossypium raimondii HOM05D003539 ORTHO05D004111 2.8e-23 111.7 78 65.4
Thecc.01G002200 Theobroma cacao HOM05D003539 ORTHO05D004111 2.8e-23 111.7 78 65.4
Duzib147G0916 Durio zibethinus HOM05D003539 ORTHO05D004111 3.7e-23 111.3 78 65.4
AL1G44630 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 4.8e-23 110.9 78 61.5
Dinv40214 Davidia involucrata HOM05D003539 ORTHO05D004111 4.8e-23 110.9 83 60.2
TAR381G1444 Trochodendron aralioides HOM05D003539 ORTHO05D004111 4.8e-23 110.9 78 61.5
Thhalv10007103m.g Eutrema salsugineum HOM05D003539 ORTHO05D004111 8.2e-23 110.2 78 60.3
PGR044G1248 Punica granatum HOM05D003539 ORTHO05D004111 8.2e-23 110.2 78 62.8
Sc09g0001980 Simmondsia chinensis HOM05D003539 ORTHO05D004111 8.2e-23 110.2 78 62.8
Carub.0001s2885 Capsella rubella HOM05D003539 ORTHO05D004111 1.1e-22 109.8 78 60.3
THA.LOC104798595 Tarenaya hassleriana HOM05D003539 ORTHO05D004111 1.1e-22 109.8 78 60.3
Glyma.16G112800 Glycine max HOM05D003539 ORTHO05D004111 1.4e-22 109.4 78 61.5
CARHR128910 Cardamine hirsuta HOM05D003539 ORTHO05D004111 1.8e-22 109.0 78 60.3
Lalb_Chr05g0229501 Lupinus albus HOM05D003539 ORTHO05D004111 1.8e-22 109.0 78 60.3
MBI04_g31205_MAGBIO Magnolia biondii HOM05D003539 ORTHO05D004111 1.8e-22 109.0 78 61.5
MD02G1108900 Malus domestica HOM05D003539 ORTHO05D004111 2.4e-22 108.6 78 60.3
Carub.0004s1644 Capsella rubella HOM05D003539 ORTHO05D004111 3.1e-22 108.2 83 55.4
Sed0013779 Sechium edule HOM05D003539 ORTHO05D004111 3.1e-22 108.2 78 62.8
Haze_00123 Corylus avellana HOM05D003539 ORTHO05D004111 4.0e-22 107.8 74 66.2
Thhalv10016395m.g Eutrema salsugineum HOM05D003539 ORTHO05D004111 4.0e-22 107.8 78 59.0
Atru.chr3.55 Acer truncatum HOM05D003539 ORTHO05D004111 5.3e-22 107.5 78 62.8
Manes.01G157300 Manihot esculenta HOM05D003539 ORTHO05D004111 5.3e-22 107.5 83 61.4
Sc06g0005250 Simmondsia chinensis HOM05D003539 ORTHO05D004111 5.3e-22 107.5 78 59.0
TAR376G1176 Trochodendron aralioides HOM05D003539 ORTHO05D004111 5.3e-22 107.5 78 61.5
QL06p053198 Quercus lobata HOM05D003539 ORTHO05D004111 6.9e-22 107.1 74 64.9
Sp4g17040 Schrenkiella parvula HOM05D003539 ORTHO05D004111 6.9e-22 107.1 78 57.7
AT1G30590 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 9.0e-22 106.7 78 60.3
Phvul.010G020100 Phaseolus vulgaris HOM05D003539 ORTHO05D004111 9.0e-22 106.7 78 61.5
Cfa016374 Carpinus fangiana HOM05D003539 ORTHO05D004111 1.2e-21 106.3 74 64.9
CiPaw.15G173100 Carya illinoinensis HOM05D003539 ORTHO05D004111 1.2e-21 106.3 74 67.6
Hma1.2p1_0085F.1_g044410 Hydrangea macrophylla HOM05D003539 ORTHO05D004111 1.2e-21 106.3 83 56.6
Oeu063413.2 Olea europaea HOM05D003539 ORTHO05D004111 1.2e-21 106.3 83 56.6
Psat3g044960 Pisum sativum HOM05D003539 ORTHO05D004111 1.2e-21 106.3 78 60.3
Prupe.7G186400 Prunus persica HOM05D003539 ORTHO05D004111 1.2e-21 106.3 78 62.8
Dinv28297 Davidia involucrata HOM05D003539 ORTHO05D004111 1.5e-21 105.9 83 56.6
AT2G34750 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 2.0e-21 105.5 78 57.7
CANSAT35G0647 Cannabis sativa HOM05D003539 ORTHO05D004111 2.6e-21 105.1 78 60.3
ClCG02G000270 Citrullus lanatus HOM05D003539 ORTHO05D004111 2.6e-21 105.1 78 60.3
Glyma.09G196200 Glycine max HOM05D003539 ORTHO05D004111 2.6e-21 105.1 78 61.5
TPR.G29658 Trifolium pratense HOM05D003539 ORTHO05D004111 2.6e-21 105.1 78 60.3
AL4G30740 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 3.4e-21 104.8 78 57.7
Ah.06g188300 Amaranthus hybridus HOM05D003539 ORTHO05D004111 4.5e-21 104.4 78 61.5
arahy.Tifrunner.gnm1.ann1.UQ0JCX Arachis hypogaea HOM05D003539 ORTHO05D004111 4.5e-21 104.4 76 59.2
arahy.Tifrunner.gnm1.ann1.VZS2MK Arachis hypogaea HOM05D003539 ORTHO05D004111 4.5e-21 104.4 76 59.2
Nn5g28137 Nelumbo nucifera HOM05D003539 ORTHO05D004111 4.5e-21 104.4 78 61.5
VMungo1309G1473 Vigna mungo HOM05D003539 ORTHO05D004111 4.5e-21 104.4 78 60.3
Oeu010807.1 Olea europaea HOM05D003539 ORTHO05D004111 7.6e-21 103.6 83 54.2
BcaB06g28796 Brassica carinata HOM05D003539 ORTHO05D004111 1.0e-20 103.2 78 56.4
BraA04t18159Z Brassica rapa HOM05D003539 ORTHO05D004111 1.0e-20 103.2 78 56.4
Carub.0004s2129 Capsella rubella HOM05D003539 ORTHO05D004111 1.0e-20 103.2 78 59.0
Cfa007110 Carpinus fangiana HOM05D003539 ORTHO05D004111 1.0e-20 103.2 74 64.9
Haze_03640 Corylus avellana HOM05D003539 ORTHO05D004111 1.0e-20 103.2 74 64.9
MELO3C006107.2 Cucumis melo HOM05D003539 ORTHO05D004111 1.3e-20 102.8 78 57.7
Sed0003470 Sechium edule HOM05D003539 ORTHO05D004111 1.3e-20 102.8 78 59.0
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 1.7e-20 102.4 78 59.0
Psat7g042440 Pisum sativum HOM05D003539 ORTHO05D004111 1.7e-20 102.4 78 60.3
A04p26550 Brassica napus HOM05D003539 ORTHO05D004111 2.2e-20 102.1 78 55.1
C04p63970 Brassica napus HOM05D003539 ORTHO05D004111 2.2e-20 102.1 78 55.1
Potri.005G098500 Populus trichocarpa HOM05D003539 ORTHO05D004111 2.9e-20 101.7 78 59.0
arahy.Tifrunner.gnm1.ann1.4LH58N Arachis hypogaea HOM05D003539 ORTHO05D004111 3.8e-20 101.3 76 56.6
BcaC06g35972 Brassica carinata HOM05D003539 ORTHO05D004111 3.8e-20 101.3 78 60.3
BcaC06g35980 Brassica carinata HOM05D003539 ORTHO05D004111 3.8e-20 101.3 78 60.3
ClCG05G001500 Citrullus lanatus HOM05D003539 ORTHO05D004111 3.8e-20 101.3 78 57.7
Sabra05G0080900 Salix brachista HOM05D003539 ORTHO05D004111 3.8e-20 101.3 78 59.0
BcaC01g05764 Brassica carinata HOM05D003539 ORTHO05D004111 4.9e-20 100.9 78 56.4
A03p19290 Brassica napus HOM05D003539 ORTHO05D004111 4.9e-20 100.9 78 56.4
C03p22480 Brassica napus HOM05D003539 ORTHO05D004111 4.9e-20 100.9 78 56.4
BolC3t14644H Brassica oleracea HOM05D003539 ORTHO05D004111 4.9e-20 100.9 78 56.4
BraA03t11183Z Brassica rapa HOM05D003539 ORTHO05D004111 4.9e-20 100.9 78 56.4
AUR62000583 Chenopodium quinoa HOM05D003539 ORTHO05D004111 4.9e-20 100.9 78 56.4
AUR62006940 Chenopodium quinoa HOM05D003539 ORTHO05D004111 4.9e-20 100.9 78 56.4
Ca_21575_v3 Cicer arietinum L. HOM05D003539 ORTHO05D004111 4.9e-20 100.9 78 56.4
Lalb_Chr09g0334501 Lupinus albus HOM05D003539 ORTHO05D004111 4.9e-20 100.9 78 57.7
Aqoxy3G00418 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 6.5e-20 100.5 82 56.1
SGA_v2.0_scaffold172G38971 Striga asiatica HOM05D003539 ORTHO05D004111 8.4e-20 100.1 83 53.0
MSTRG.20424 Avicennia marina HOM05D003539 ORTHO05D004111 1.1e-19 99.8 83 53.0
EL10Ac4g09711 Beta vulgaris HOM05D003539 ORTHO05D004111 1.1e-19 99.8 78 56.4
Nitab4.5_0000588g0180 Nicotiana tabacum HOM05D003539 ORTHO05D004111 1.1e-19 99.8 83 55.4
Aqoxy3G00897 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 1.4e-19 99.4 82 54.9
AL4G36550 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 1.4e-19 99.4 79 55.7
arahy.Tifrunner.gnm1.ann1.JIK3X3 Arachis hypogaea HOM05D003539 ORTHO05D004111 1.4e-19 99.4 76 55.3
Lj2C504G7 Lonicera japonica HOM05D003539 ORTHO05D004111 1.9e-19 99.0 68 63.2
AT2G39240 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 3.2e-19 98.2 78 56.4
C07p01640 Brassica napus HOM05D003539 ORTHO05D004111 3.2e-19 98.2 78 59.0
Migut.A00468 Erythranthe guttata HOM05D003539 ORTHO05D004111 3.2e-19 98.2 83 51.8
Medtr4g117680 Medicago truncatula HOM05D003539 ORTHO05D004111 3.2e-19 98.2 78 57.7
Nitab4.5_0000855g0080 Nicotiana tabacum HOM05D003539 ORTHO05D004111 3.2e-19 98.2 83 54.2
Nitab4.5_0003096g0020 Nicotiana tabacum HOM05D003539 ORTHO05D004111 3.2e-19 98.2 83 54.2
BcaC02g11551 Brassica carinata HOM05D003539 ORTHO05D004111 4.2e-19 97.8 75 56.0
BolC4t22991H Brassica oleracea HOM05D003539 ORTHO05D004111 4.2e-19 97.8 75 56.0
FvH4_1g10010 Fragaria vesca HOM05D003539 ORTHO05D004111 4.2e-19 97.8 78 57.7
FAN19G1026 Fragaria x ananassa HOM05D003539 ORTHO05D004111 4.2e-19 97.8 78 57.7
FAN26G1725 Fragaria x ananassa HOM05D003539 ORTHO05D004111 4.2e-19 97.8 78 57.7
RcHm_v2.0_Chr2g0096801 Rosa chinensis HOM05D003539 ORTHO05D004111 4.2e-19 97.8 78 57.7
SalBow7G2073 Salvia bowleyana HOM05D003539 ORTHO05D004111 4.2e-19 97.8 81 54.3
SGA_v2.0_scaffold36G14401 Striga asiatica HOM05D003539 ORTHO05D004111 4.2e-19 97.8 83 49.4
FAN23G0637 Fragaria x ananassa HOM05D003539 ORTHO05D004111 5.5e-19 97.4 78 57.7
FAN23G2523 Fragaria x ananassa HOM05D003539 ORTHO05D004111 5.5e-19 97.4 78 57.7
FAN28G2151 Fragaria x ananassa HOM05D003539 ORTHO05D004111 5.5e-19 97.4 78 57.7
Actinidia28753 Actinidia chinensis HOM05D003539 ORTHO05D004111 9.3e-19 96.7 78 57.7
CSS0035723 Camellia sinensis var. sinensis HOM05D003539 ORTHO05D004111 9.3e-19 96.7 78 55.1
Aqoxy6G01535 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 2.1e-18 95.5 78 56.4
C04p14010 Brassica napus HOM05D003539 ORTHO05D004111 2.1e-18 95.5 75 54.7
Peaxi162Scf00677g00114 Petunia axillaris HOM05D003539 ORTHO05D004111 2.1e-18 95.5 83 51.8
vmacro18474 Vaccinium macrocarpon HOM05D003539 ORTHO05D004111 2.1e-18 95.5 78 55.1
Peaxi162Scf00344g01722 Petunia axillaris HOM05D003539 ORTHO05D004111 3.5e-18 94.7 68 61.8
Lj4g0013403 Lotus japonicus HOM05D003539 ORTHO05D004111 4.6e-18 94.4 78 55.1
AL4G35010 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 7.9e-18 93.6 73 56.2
CAN.G1428.5 Capsicum annuum HOM05D003539 ORTHO05D004111 7.9e-18 93.6 83 51.8
Hund21770 Selenicereus undatus HOM05D003539 ORTHO05D004111 7.9e-18 93.6 89 52.8
Lsat_1_v5_gn_5_30740 Lactuca sativa HOM05D003539 ORTHO05D004111 1.3e-17 92.8 74 52.7
ECA233G1070 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.0e-17 91.7 68 54.4
ATR0605G358 Amborella trichopoda HOM05D003539 ORTHO05D004111 3.9e-17 91.3 78 52.6
Mapoly0144s0013 Marchantia polymorpha HOM05D003539 ORTHO05D004111 3.9e-17 91.3 78 51.3
Solyc02g082340.3 Solanum lycopersicum HOM05D003539 ORTHO05D004111 3.9e-17 91.3 83 50.6
Sopen02g027000 Solanum pennellii HOM05D003539 ORTHO05D004111 3.9e-17 91.3 83 50.6
PSO170G6051 Papaver somniferum HOM05D003539 ORTHO05D004111 5.1e-17 90.9 78 50.0
PSO017G0405 Papaver somniferum HOM05D003539 ORTHO05D004111 8.7e-17 90.1 78 50.0
arahy.Tifrunner.gnm1.ann1.PPI4NM Arachis hypogaea HOM05D003539 ORTHO05D004111 1.9e-16 89.0 67 55.2
HanXRQChr16g0510861 Helianthus annuus HOM05D003539 ORTHO05D004111 2.5e-16 88.6 78 50.0
Pp3c18_6750 Physcomitrium patens HOM05D003539 ORTHO05D004111 5.7e-16 87.4 78 50.0
Pp3c18_6751 Physcomitrium patens HOM05D003539 ORTHO05D004111 5.7e-16 87.4 78 50.0
HPP92_018392 Vanilla planifolia HOM05D003539 ORTHO05D004111 5.7e-16 87.4 69 53.6
C07p01430 Brassica napus HOM05D003539 ORTHO05D004111 7.4e-16 87.0 87 50.6
HanXRQChr09g0270331 Helianthus annuus HOM05D003539 ORTHO05D004111 1.6e-15 85.9 68 52.9
CDE07G0217 Ceratophyllum demersum HOM05D003539 ORTHO05D004111 2.2e-15 85.5 78 50.0
Cc07_g12170 Coffea canephora HOM05D003539 ORTHO05D004111 2.2e-15 85.5 83 47.0
Peaxi162Scf00015g00939 Petunia axillaris HOM05D003539 ORTHO05D004111 6.3e-15 84.0 79 50.6
SEGI_33601 Sequoiadendron giganteum HOM05D003539 ORTHO05D004111 2.4e-14 82.0 78 46.2
Pp3c21_14490 Physcomitrium patens HOM05D003539 ORTHO05D004111 4.1e-14 81.3 78 47.4
Os06g0688100 Oryza sativa ssp. japonica HOM05D003539 ORTHO05D004111 6.9e-14 80.5 78 48.7
SMO356G0429 Selaginella moellendorffii HOM05D003539 ORTHO05D004111 6.9e-14 80.5 78 48.7
Hund28202 Selenicereus undatus HOM05D003539 ORTHO05D004111 1.3e-12 76.3 60 58.3
Hund28214 Selenicereus undatus HOM05D003539 ORTHO05D004111 1.3e-12 76.3 60 58.3
unitig_699.g19839 Utricularia gibba HOM05D003539 ORTHO05D004111 1.7e-12 75.9 65 47.7
BraA05t20035Z Brassica rapa HOM05D003539 ORTHO05D004111 2.9e-12 75.1 54 59.3
AagrBONN_evm.TU.Sc2ySwM_368.2744 Anthoceros agrestis HOM05D003539 ORTHO05D004111 6.5e-12 73.9 78 43.6
Cre03.g207950 Chlamydomonas reinhardtii HOM05D003539 ORTHO05D004111 1.5e-08 62.8 78 37.2
Zm00001eb226160 Zea mays HOM05D003539 ORTHO05D004111 9.7e-08 60.1 70 48.6
PRCOL_00004831 Prasinoderma coloniale HOM05D003539 ORTHO05D004111 3.7e-07 58.2 72 40.3
Manes.11G091200 Manihot esculenta HOM05D003539 ORTHO05D004111 4.1e-06 54.7 60 38.3
Actinidia20763 Actinidia chinensis HOM05D003539 ORTHO05D004111 6.9e-06 53.9 45 57.8


User provided reference genes

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