Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc69.34 Carica papaya HOM05D004380 ORTHO05D005134 2.6e-286 988.0 500 100.0
TWI81G0890 Tripterygium wilfordii HOM05D004380 ORTHO05D005134 1.4e-146 523.9 604 51.2
THA.LOC104814403 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 3.8e-144 515.8 568 54.0
CiPaw.11G087400 Carya illinoinensis HOM05D004380 ORTHO05D005134 3.4e-137 492.7 506 56.3
Cfa012380 Carpinus fangiana HOM05D004380 ORTHO05D005134 2.9e-136 489.6 518 55.6
Manes.15G172200 Manihot esculenta HOM05D004380 ORTHO05D005134 8.5e-136 488.0 608 51.2
Potri.003G087200 Populus trichocarpa HOM05D004380 ORTHO05D005134 8.5e-136 488.0 550 54.0
ClCG03G011240 Citrullus lanatus HOM05D004380 ORTHO05D005134 2.8e-131 473.0 550 51.3
QL03p017813 Quercus lobata HOM05D004380 ORTHO05D005134 9.1e-130 468.0 540 53.3
Sabra03G0056900 Salix brachista HOM05D004380 ORTHO05D005134 4.2e-127 459.1 544 52.9
Thecc.05G299600 Theobroma cacao HOM05D004380 ORTHO05D005134 7.9e-126 454.9 532 51.1
Sed0018208 Sechium edule HOM05D004380 ORTHO05D005134 3.0e-125 453.0 548 51.1
GSVIVG01013206001 Vitis vinifera HOM05D004380 ORTHO05D005134 3.0e-125 453.0 503 54.7
Duzib128G0331 Durio zibethinus HOM05D004380 ORTHO05D005134 1.1e-124 451.1 525 52.2
Gorai.007G293700 Gossypium raimondii HOM05D004380 ORTHO05D005134 1.3e-123 447.6 587 48.9
Migut.J01084 Erythranthe guttata HOM05D004380 ORTHO05D005134 1.7e-123 447.2 532 50.8
Actinidia10879 Actinidia chinensis HOM05D004380 ORTHO05D005134 3.1e-122 443.0 552 49.3
Aa31LG9G15640 Aethionema arabicum HOM05D004380 ORTHO05D005134 3.1e-122 443.0 526 51.7
CsaV3_2G035720 Cucumis sativus L. HOM05D004380 ORTHO05D005134 1.2e-121 441.0 563 47.8
vmacro14143 Vaccinium macrocarpon HOM05D004380 ORTHO05D005134 1.3e-120 437.6 520 51.5
arahy.Tifrunner.gnm1.ann1.522STQ Arachis hypogaea HOM05D004380 ORTHO05D005134 2.9e-120 436.4 506 50.2
Gohir.A11G262400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 3.2e-119 433.0 588 47.1
Haze_08305 Corylus avellana HOM05D004380 ORTHO05D005134 9.4e-119 431.4 571 48.2
Rhsim07G0121900 Rhododendron simsii HOM05D004380 ORTHO05D005134 4.7e-118 429.1 506 50.4
SGA_v2.0_scaffold86G26890 Striga asiatica HOM05D004380 ORTHO05D005134 1.4e-117 427.6 509 50.7
DCAR_015696 Daucus carota HOM05D004380 ORTHO05D005134 1.8e-117 427.2 532 47.6
Medtr8g030840 Medicago truncatula HOM05D004380 ORTHO05D005134 3.0e-117 426.4 538 49.1
Carub.0001s3020 Capsella rubella HOM05D004380 ORTHO05D005134 1.1e-116 424.5 592 45.9
Lsat_1_v5_gn_6_63641 Lactuca sativa HOM05D004380 ORTHO05D005134 9.7e-116 421.4 503 49.9
Gohir.D11G272400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 1.3e-115 421.0 602 45.2
AT1G31870 Arabidopsis thaliana HOM05D004380 ORTHO05D005134 1.1e-114 417.9 560 48.8
Thhalv10007193m.g Eutrema salsugineum HOM05D004380 ORTHO05D005134 1.4e-114 417.5 562 47.0
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 5.3e-114 415.6 509 50.1
Prupe.8G202500 Prunus persica HOM05D004380 ORTHO05D005134 7.0e-114 415.2 505 50.5
HanXRQChr16g0500491 Helianthus annuus HOM05D004380 ORTHO05D005134 4.5e-113 412.5 520 47.7
AL1G45970 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 7.7e-113 411.8 558 46.8
MD16G1006500 Malus domestica HOM05D004380 ORTHO05D005134 7.7e-113 411.8 504 50.2
Cc01_g02120 Coffea canephora HOM05D004380 ORTHO05D005134 2.9e-112 409.8 570 46.0
Ah.09g224390 Amaranthus hybridus HOM05D004380 ORTHO05D005134 3.8e-112 409.5 547 48.8
BolC5t32694H Brassica oleracea HOM05D004380 ORTHO05D005134 1.9e-111 407.1 558 46.6
Atru.chr1.3775 Acer truncatum HOM05D004380 ORTHO05D005134 9.4e-111 404.8 460 51.7
CAN.G1336.5 Capsicum annuum HOM05D004380 ORTHO05D005134 1.2e-110 404.4 554 45.8
ECA233G1538 Erigeron canadensis HOM05D004380 ORTHO05D005134 2.1e-110 403.7 520 49.0
BcaB03g13784 Brassica carinata HOM05D004380 ORTHO05D005134 2.7e-110 403.3 543 47.0
Psat4g154840 Pisum sativum HOM05D004380 ORTHO05D005134 2.7e-110 403.3 504 49.8
Lalb_Chr04g0258181 Lupinus albus HOM05D004380 ORTHO05D005134 4.7e-110 402.5 544 47.1
BraA05t21429Z Brassica rapa HOM05D004380 ORTHO05D005134 2.3e-109 400.2 553 46.1
Dinv25182 Davidia involucrata HOM05D004380 ORTHO05D005134 2.3e-109 400.2 492 50.6
Glyma.07G070900 Glycine max HOM05D004380 ORTHO05D005134 4.0e-109 399.4 566 46.3
PGSC0003DMG400022576 Solanum tuberosum HOM05D004380 ORTHO05D005134 6.8e-109 398.7 584 44.2
A05p25450 Brassica napus HOM05D004380 ORTHO05D005134 3.4e-108 396.4 554 45.7
BcaC05g27949 Brassica carinata HOM05D004380 ORTHO05D005134 7.5e-108 395.2 554 46.0
C05p39530 Brassica napus HOM05D004380 ORTHO05D005134 9.8e-108 394.8 554 46.0
CARHR031210 Cardamine hirsuta HOM05D004380 ORTHO05D005134 1.4e-106 391.0 563 45.6
Phvul.010G098800 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 2.4e-106 390.2 579 44.7
Peaxi162Scf01164g00006 Petunia axillaris HOM05D004380 ORTHO05D005134 9.1e-106 388.3 590 42.7
CiPaw.04G096200 Carya illinoinensis HOM05D004380 ORTHO05D005134 2.7e-105 386.7 509 48.7
CDE02G1296 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 2.7e-105 386.7 572 42.5
HanXRQChr12g0372541 Helianthus annuus HOM05D004380 ORTHO05D005134 4.5e-105 386.0 515 45.2
Nn6g33684 Nelumbo nucifera HOM05D004380 ORTHO05D005134 1.3e-104 384.4 648 40.6
Lj3g0000626 Lotus japonicus HOM05D004380 ORTHO05D005134 6.5e-104 382.1 555 43.6
VMungo0331G0855 Vigna mungo HOM05D004380 ORTHO05D005134 6.5e-104 382.1 537 44.7
CANSAT21G1629 Cannabis sativa HOM05D004380 ORTHO05D005134 1.9e-103 380.6 499 45.1
TAR629G2821 Trochodendron aralioides HOM05D004380 ORTHO05D005134 3.6e-102 376.3 508 47.0
Solyc03g033950.4 Solanum lycopersicum HOM05D004380 ORTHO05D005134 4.7e-102 375.9 548 44.9
RcHm_v2.0_Chr4g0446311 Rosa chinensis HOM05D004380 ORTHO05D005134 8.0e-102 375.2 507 47.1
Hma1.2p1_0311F.1_g121260 Hydrangea macrophylla HOM05D004380 ORTHO05D005134 1.4e-101 374.4 521 47.4
FAN17G2609 Fragaria x ananassa HOM05D004380 ORTHO05D005134 1.2e-100 371.3 509 47.5
FAN22G0510 Fragaria x ananassa HOM05D004380 ORTHO05D005134 1.2e-100 371.3 516 45.5
FvH4_4g36560 Fragaria vesca HOM05D004380 ORTHO05D005134 1.1e-98 364.8 500 45.8
FAN12G0331 Fragaria x ananassa HOM05D004380 ORTHO05D005134 1.1e-98 364.8 500 45.8
unitig_21.g20505 Utricularia gibba HOM05D004380 ORTHO05D005134 1.8e-98 364.0 534 44.8
Nitab4.5_0005084g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 9.1e-98 361.7 539 43.8
EL10Ac4g09041 Beta vulgaris HOM05D004380 ORTHO05D005134 1.2e-97 361.3 555 44.1
Ciclev10033653m.g Citrus clementina HOM05D004380 ORTHO05D005134 5.9e-97 359.0 560 43.0
FAN07G2732 Fragaria x ananassa HOM05D004380 ORTHO05D005134 7.7e-97 358.6 529 44.0
Oeu045705.2 Olea europaea HOM05D004380 ORTHO05D005134 6.1e-94 349.0 510 45.5
PSO782G4920 Papaver somniferum HOM05D004380 ORTHO05D005134 6.1e-94 349.0 517 42.9
Lj6C290G5 Lonicera japonica HOM05D004380 ORTHO05D005134 2.3e-93 347.1 595 39.5
arahy.Tifrunner.gnm1.ann1.MX4EXC Arachis hypogaea HOM05D004380 ORTHO05D005134 4.0e-93 346.3 473 45.9
Os08g0178300 Oryza sativa ssp. japonica HOM05D004380 ORTHO05D005134 5.2e-93 345.9 561 42.2
Sopen03g006700 Solanum pennellii HOM05D004380 ORTHO05D005134 2.0e-92 344.0 515 43.5
PSO832G0693 Papaver somniferum HOM05D004380 ORTHO05D005134 3.4e-92 343.2 521 43.2
PSO063G6462 Papaver somniferum HOM05D004380 ORTHO05D005134 6.3e-91 339.0 512 41.0
Sp1g27590 Schrenkiella parvula HOM05D004380 ORTHO05D005134 2.4e-90 337.0 473 45.0
Aqoxy3G00393 Aquilegia oxysepala HOM05D004380 ORTHO05D005134 3.5e-89 333.2 535 41.5
COL.COLO4_13527 Corchorus olitorius HOM05D004380 ORTHO05D005134 7.3e-87 325.5 221 74.2
AUR62007222 Chenopodium quinoa HOM05D004380 ORTHO05D005134 3.6e-86 323.2 561 40.8
AUR62018778 Chenopodium quinoa HOM05D004380 ORTHO05D005134 1.5e-84 317.8 485 43.7
CDE11G0710 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 1.3e-83 314.7 519 40.8
Haze_08308 Corylus avellana HOM05D004380 ORTHO05D005134 1.6e-81 307.8 511 42.5
ATR0665G406 Amborella trichopoda HOM05D004380 ORTHO05D005134 2.3e-77 293.9 631 35.0
MELO3C024775.2 Cucumis melo HOM05D004380 ORTHO05D005134 6.8e-77 292.4 464 44.0
CAN.G1823.5 Capsicum annuum HOM05D004380 ORTHO05D005134 1.5e-76 291.2 261 60.9
Actinidia31472 Actinidia chinensis HOM05D004380 ORTHO05D005134 1.2e-73 281.6 387 47.8
Nitab4.5_0008421g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 6.6e-72 275.8 560 35.7
SEGI_39298 Sequoiadendron giganteum HOM05D004380 ORTHO05D005134 1.2e-70 271.6 586 35.7
Cpa.g.sc69.32 Carica papaya HOM05D004380 ORTHO05D005134 1.5e-68 264.6 141 90.8
arahy.Tifrunner.gnm1.ann1.ARJY2C Arachis hypogaea HOM05D004380 ORTHO05D005134 1.4e-66 258.1 258 57.8
CAN.G248.21 Capsicum annuum HOM05D004380 ORTHO05D005134 3.9e-64 250.0 208 60.1
Phvul.011G076400 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 6.6e-64 249.2 181 67.4
THA.LOC104812727 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 4.3e-63 246.5 303 49.5
Mapoly0062s0011 Marchantia polymorpha HOM05D004380 ORTHO05D005134 1.1e-61 241.9 581 33.2
TPR.G23111 Trifolium pratense HOM05D004380 ORTHO05D005134 2.0e-60 237.7 175 64.6
arahy.Tifrunner.gnm1.ann1.I1PL9V Arachis hypogaea HOM05D004380 ORTHO05D005134 3.4e-60 236.9 158 70.9
Hund11501 Selenicereus undatus HOM05D004380 ORTHO05D005134 7.6e-60 235.7 141 75.9
HPP92_020120 Vanilla planifolia HOM05D004380 ORTHO05D005134 2.2e-59 234.2 159 69.8
Pp3c3_10050 Physcomitrium patens HOM05D004380 ORTHO05D005134 4.9e-59 233.0 576 34.0
HPP92_020130 Vanilla planifolia HOM05D004380 ORTHO05D005134 6.4e-59 232.6 158 69.6
Sed0024296 Sechium edule HOM05D004380 ORTHO05D005134 2.1e-57 227.6 173 68.2
Aa31LG9G6660 Aethionema arabicum HOM05D004380 ORTHO05D005134 2.7e-57 227.3 145 75.2
CARHR062710 Cardamine hirsuta HOM05D004380 ORTHO05D005134 1.7e-56 224.6 172 68.0
Sc22g0001370 Simmondsia chinensis HOM05D004380 ORTHO05D005134 6.6e-56 222.6 496 37.1
SMO144G0180 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 3.3e-55 220.3 214 53.3
AagrBONN_evm.TU.Sc2ySwM_117.3835 Anthoceros agrestis HOM05D004380 ORTHO05D005134 9.6e-55 218.8 206 55.3
DCAR_007574 Daucus carota HOM05D004380 ORTHO05D005134 5.8e-52 209.5 139 70.5
arahy.Tifrunner.gnm1.ann1.45D7QY Arachis hypogaea HOM05D004380 ORTHO05D005134 7.6e-52 209.1 158 67.1
SMO118G0163 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 3.8e-51 206.8 215 51.2
Oeu037610.2 Olea europaea HOM05D004380 ORTHO05D005134 5.4e-50 203.0 432 39.1
Potri.001G147100 Populus trichocarpa HOM05D004380 ORTHO05D005134 3.9e-48 196.8 452 33.8
TPR.G20578 Trifolium pratense HOM05D004380 ORTHO05D005134 6.6e-48 196.1 106 79.2
arahy.Tifrunner.gnm1.ann1.MH0ZUI Arachis hypogaea HOM05D004380 ORTHO05D005134 1.1e-47 195.3 106 80.2
CBR_g26347 Chara braunii HOM05D004380 ORTHO05D005134 9.6e-47 192.2 334 40.4
Ca_23634_v3 Cicer arietinum L. HOM05D000346 ORTHO05D000326 4.3e-39 166.8 375 38.1
CSS0001415 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 5.6e-39 166.4 86 83.7
CSS0037993 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 5.6e-39 166.4 86 83.7
QL12p007207 Quercus lobata HOM05D004380 ORTHO05D005134 6.2e-38 162.9 163 56.4
CSS0014122 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 3.1e-37 160.6 390 35.6
CSS0026269 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 3.1e-37 160.6 390 35.6
Haze_13061 Corylus avellana HOM05D000001 ORTHO05D010365 1.2e-36 158.7 151 59.6
Cre01.g003487 Chlamydomonas reinhardtii HOM05D004380 ORTHO05D005134 7.9e-33 146.0 188 46.3
MCO15G532 Micromonas commoda HOM05D004380 ORTHO05D005134 3.9e-32 143.7 247 35.2
SHI10270 Sapria himalayana HOM05D004380 ORTHO05D005134 3.9e-32 143.7 268 43.3
Hund11272 Selenicereus undatus HOM05D004380 ORTHO05D005134 4.3e-31 140.2 148 55.4
Zm00001eb400590 Zea mays HOM05D004380 ORTHO05D005134 4.1e-29 133.7 176 50.0
Lsat_1_v5_gn_3_2421 Lactuca sativa HOM05D004380 ORTHO05D005134 6.9e-29 132.9 137 56.2
PRCOL_00005638 Prasinoderma coloniale HOM05D004380 ORTHO05D005134 8.4e-27 125.9 204 38.7
CAN.G1186.1 Capsicum annuum HOM05D004380 ORTHO05D005134 5.7e-23 113.2 153 49.0
Dinv40656 Davidia involucrata HOM05D000301 ORTHO05D000303 4.1e-21 107.1 56 83.9
Sp5g21510 Schrenkiella parvula HOM05D004380 ORTHO05D005134 6.9e-21 106.3 91 56.0
TPR.G22617 Trifolium pratense HOM05D004380 ORTHO05D005134 1.9e-18 98.2 228 39.9
AL3G52660 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 7.2e-18 96.3 66 65.2
Medtr8g446970 Medicago truncatula HOM05D004380 ORTHO05D005134 1.2e-17 95.5 276 33.7
HPP92_020129 Vanilla planifolia HOM05D004380 ORTHO05D005134 1.2e-17 95.5 133 43.6
COL.COLO4_33038 Corchorus olitorius HOM05D004380 ORTHO05D005134 7.9e-17 92.8 88 61.4
TPR.G11131 Trifolium pratense HOM05D004380 ORTHO05D005134 2.3e-16 91.3 251 34.7
Lj2C247T7 Lonicera japonica HOM05D004380 ORTHO05D005134 9.7e-15 85.9 76 61.8
Cfa026589 Carpinus fangiana HOM05D004380 ORTHO05D005134 7.7e-12 76.3 133 37.6
TPR.G17657 Trifolium pratense HOM05D004380 ORTHO05D005134 3.2e-10 70.9 102 46.1
C05p31200 Brassica napus HOM05D004380 ORTHO05D005134 3.6e-09 67.4 49 63.3
arahy.Tifrunner.gnm1.ann1.FR68MS Arachis hypogaea HOM05D005435 ORTHO05D005134 1.1e-07 62.4 62 66.1
Medtr4g081620 Medicago truncatula HOM05D004380 ORTHO05D005134 4.4e-07 60.5 86 51.2
Cpa.g.c30383 Carica papaya HOM05D004380 ORTHO05D005134 2.8e-06 57.8 60 60.0


User provided reference genes

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