Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc69.32 Carica papaya HOM05D004380 ORTHO05D005134 3.5e-88 328.2 157 100.0
Cpa.g.sc69.34 Carica papaya HOM05D004380 ORTHO05D005134 2.5e-70 268.9 141 90.8
TWI81G0890 Tripterygium wilfordii HOM05D004380 ORTHO05D005134 1.6e-69 266.2 157 79.6
Actinidia10879 Actinidia chinensis HOM05D004380 ORTHO05D005134 3.4e-67 258.5 148 81.8
Manes.15G172200 Manihot esculenta HOM05D004380 ORTHO05D005134 3.4e-67 258.5 157 79.0
Potri.003G087200 Populus trichocarpa HOM05D004380 ORTHO05D005134 3.4e-67 258.5 157 79.6
Rhsim07G0121900 Rhododendron simsii HOM05D004380 ORTHO05D005134 4.5e-67 258.1 148 81.1
Nn6g33684 Nelumbo nucifera HOM05D004380 ORTHO05D005134 2.2e-66 255.8 148 80.4
Dinv25182 Davidia involucrata HOM05D004380 ORTHO05D005134 3.8e-66 255.0 148 81.1
GSVIVG01013206001 Vitis vinifera HOM05D004380 ORTHO05D005134 6.5e-66 254.2 148 79.7
vmacro14143 Vaccinium macrocarpon HOM05D004380 ORTHO05D005134 1.1e-65 253.4 148 79.1
Actinidia31472 Actinidia chinensis HOM05D004380 ORTHO05D005134 1.4e-65 253.1 148 79.7
Atru.chr1.3775 Acer truncatum HOM05D004380 ORTHO05D005134 3.2e-65 251.9 157 75.8
Cfa012380 Carpinus fangiana HOM05D004380 ORTHO05D005134 4.2e-65 251.5 157 77.1
Cc01_g02120 Coffea canephora HOM05D004380 ORTHO05D005134 7.1e-65 250.8 148 79.7
Hma1.2p1_0311F.1_g121260 Hydrangea macrophylla HOM05D004380 ORTHO05D005134 1.2e-64 250.0 148 79.1
MD16G1006500 Malus domestica HOM05D004380 ORTHO05D005134 1.2e-64 250.0 148 79.7
CiPaw.11G087400 Carya illinoinensis HOM05D004380 ORTHO05D005134 1.6e-64 249.6 157 75.8
Thecc.05G299600 Theobroma cacao HOM05D004380 ORTHO05D005134 2.1e-64 249.2 148 79.7
CAN.G1336.5 Capsicum annuum HOM05D004380 ORTHO05D005134 2.7e-64 248.8 148 79.7
Lj6C290G5 Lonicera japonica HOM05D004380 ORTHO05D005134 3.5e-64 248.4 151 77.5
RcHm_v2.0_Chr4g0446311 Rosa chinensis HOM05D004380 ORTHO05D005134 3.5e-64 248.4 148 77.7
ClCG03G011240 Citrullus lanatus HOM05D004380 ORTHO05D005134 7.9e-64 247.3 148 77.7
FAN17G2609 Fragaria x ananassa HOM05D004380 ORTHO05D005134 7.9e-64 247.3 148 76.4
CsaV3_2G035720 Cucumis sativus L. HOM05D004380 ORTHO05D005134 2.3e-63 245.7 148 77.0
Sabra03G0056900 Salix brachista HOM05D004380 ORTHO05D005134 2.3e-63 245.7 150 78.0
Gorai.007G293700 Gossypium raimondii HOM05D004380 ORTHO05D005134 3.9e-63 245.0 148 77.7
Solyc03g033950.4 Solanum lycopersicum HOM05D004380 ORTHO05D005134 3.9e-63 245.0 148 79.7
Sopen03g006700 Solanum pennellii HOM05D004380 ORTHO05D005134 3.9e-63 245.0 146 80.1
THA.LOC104814403 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 3.9e-63 245.0 157 74.5
ECA233G1538 Erigeron canadensis HOM05D004380 ORTHO05D005134 5.1e-63 244.6 148 75.7
Gohir.A11G262400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 5.1e-63 244.6 148 77.0
PGSC0003DMG400022576 Solanum tuberosum HOM05D004380 ORTHO05D005134 8.7e-63 243.8 146 79.5
Sed0018208 Sechium edule HOM05D004380 ORTHO05D005134 1.1e-62 243.4 157 73.2
FAN22G0510 Fragaria x ananassa HOM05D004380 ORTHO05D005134 1.5e-62 243.0 148 75.0
TPR.G23111 Trifolium pratense HOM05D004380 ORTHO05D005134 1.5e-62 243.0 148 73.6
Lsat_1_v5_gn_6_63641 Lactuca sativa HOM05D004380 ORTHO05D005134 3.3e-62 241.9 147 73.5
QL03p017813 Quercus lobata HOM05D004380 ORTHO05D005134 5.7e-62 241.1 156 75.6
FvH4_4g36560 Fragaria vesca HOM05D004380 ORTHO05D005134 7.4e-62 240.7 148 75.0
FAN12G0331 Fragaria x ananassa HOM05D004380 ORTHO05D005134 7.4e-62 240.7 148 75.0
Ah.09g224390 Amaranthus hybridus HOM05D004380 ORTHO05D005134 9.7e-62 240.4 150 74.0
EL10Ac4g09041 Beta vulgaris HOM05D004380 ORTHO05D005134 9.7e-62 240.4 156 72.4
Hund11501 Selenicereus undatus HOM05D004380 ORTHO05D005134 1.3e-61 240.0 148 74.3
CDE11G0710 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 2.8e-61 238.8 148 74.3
SGA_v2.0_scaffold86G26890 Striga asiatica HOM05D004380 ORTHO05D005134 2.8e-61 238.8 169 66.3
Aqoxy3G00393 Aquilegia oxysepala HOM05D004380 ORTHO05D005134 3.7e-61 238.4 148 75.0
DCAR_015696 Daucus carota HOM05D004380 ORTHO05D005134 3.7e-61 238.4 148 73.6
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 6.3e-61 237.7 168 66.7
Migut.J01084 Erythranthe guttata HOM05D004380 ORTHO05D005134 8.2e-61 237.3 148 75.0
Aa31LG9G15640 Aethionema arabicum HOM05D004380 ORTHO05D005134 1.1e-60 236.9 148 74.3
FAN07G2732 Fragaria x ananassa HOM05D004380 ORTHO05D005134 1.8e-60 236.1 148 73.6
Os08g0178300 Oryza sativa ssp. japonica HOM05D004380 ORTHO05D005134 5.3e-60 234.6 148 73.6
BcaB03g13784 Brassica carinata HOM05D004380 ORTHO05D005134 6.9e-60 234.2 148 74.3
CAN.G1823.5 Capsicum annuum HOM05D004380 ORTHO05D005134 6.9e-60 234.2 148 75.7
Sp1g27590 Schrenkiella parvula HOM05D004380 ORTHO05D005134 1.2e-59 233.4 148 73.0
BcaC05g27949 Brassica carinata HOM05D004380 ORTHO05D005134 2.6e-59 232.3 148 73.6
C05p39530 Brassica napus HOM05D004380 ORTHO05D005134 2.6e-59 232.3 148 73.6
COL.COLO4_13527 Corchorus olitorius HOM05D004380 ORTHO05D005134 2.6e-59 232.3 157 73.2
HanXRQChr16g0500491 Helianthus annuus HOM05D004380 ORTHO05D005134 4.5e-59 231.5 148 72.3
HPP92_020120 Vanilla planifolia HOM05D004380 ORTHO05D005134 4.5e-59 231.5 150 70.7
HPP92_020130 Vanilla planifolia HOM05D004380 ORTHO05D005134 4.5e-59 231.5 150 70.7
Prupe.8G202500 Prunus persica HOM05D004380 ORTHO05D005134 5.9e-59 231.1 157 72.0
Thhalv10007193m.g Eutrema salsugineum HOM05D004380 ORTHO05D005134 1.3e-58 229.9 148 73.6
PSO832G0693 Papaver somniferum HOM05D004380 ORTHO05D005134 1.3e-58 229.9 148 71.6
BolC5t32694H Brassica oleracea HOM05D004380 ORTHO05D005134 1.7e-58 229.6 148 73.0
PSO782G4920 Papaver somniferum HOM05D004380 ORTHO05D005134 1.7e-58 229.6 148 70.9
TAR629G2821 Trochodendron aralioides HOM05D004380 ORTHO05D005134 1.7e-58 229.6 148 73.6
A05p25450 Brassica napus HOM05D004380 ORTHO05D005134 2.9e-58 228.8 148 72.3
BraA05t21429Z Brassica rapa HOM05D004380 ORTHO05D005134 2.9e-58 228.8 148 72.3
PSO063G6462 Papaver somniferum HOM05D004380 ORTHO05D005134 3.8e-58 228.4 148 70.3
CDE02G1296 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 1.4e-57 226.5 148 71.6
Carub.0001s3020 Capsella rubella HOM05D004380 ORTHO05D005134 1.9e-57 226.1 148 70.9
Aa31LG9G6660 Aethionema arabicum HOM05D004380 ORTHO05D005134 2.5e-57 225.7 148 70.9
arahy.Tifrunner.gnm1.ann1.522STQ Arachis hypogaea HOM05D004380 ORTHO05D005134 2.5e-57 225.7 157 66.9
Oeu045705.2 Olea europaea HOM05D004380 ORTHO05D005134 5.5e-57 224.6 150 74.0
HanXRQChr12g0372541 Helianthus annuus HOM05D004380 ORTHO05D005134 7.2e-57 224.2 148 70.3
Medtr8g030840 Medicago truncatula HOM05D004380 ORTHO05D005134 7.2e-57 224.2 148 69.6
AL1G45970 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 9.3e-57 223.8 148 71.6
Peaxi162Scf01164g00006 Petunia axillaris HOM05D004380 ORTHO05D005134 3.6e-56 221.9 148 73.0
Haze_08305 Corylus avellana HOM05D004380 ORTHO05D005134 4.6e-56 221.5 182 62.6
Sed0024296 Sechium edule HOM05D004380 ORTHO05D005134 7.9e-56 220.7 147 71.4
Ciclev10033653m.g Citrus clementina HOM05D004380 ORTHO05D005134 1.0e-55 220.3 120 80.0
Gohir.D11G272400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 1.8e-55 219.5 148 70.9
AT1G31870 Arabidopsis thaliana HOM05D004380 ORTHO05D005134 8.7e-55 217.2 148 68.9
Glyma.07G070900 Glycine max HOM05D004380 ORTHO05D005134 8.7e-55 217.2 118 83.1
VMungo0331G0855 Vigna mungo HOM05D004380 ORTHO05D005134 8.7e-55 217.2 119 80.7
Duzib128G0331 Durio zibethinus HOM05D004380 ORTHO05D005134 1.9e-54 216.1 147 70.7
ATR0665G406 Amborella trichopoda HOM05D004380 ORTHO05D005134 3.3e-54 215.3 148 68.2
CARHR031210 Cardamine hirsuta HOM05D004380 ORTHO05D005134 4.3e-54 214.9 148 70.3
Mapoly0062s0011 Marchantia polymorpha HOM05D004380 ORTHO05D005134 1.3e-53 213.4 156 65.4
Lj3g0000626 Lotus japonicus HOM05D004380 ORTHO05D005134 1.6e-53 213.0 146 67.1
Phvul.010G098800 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 2.2e-53 212.6 118 80.5
Phvul.011G076400 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 1.1e-52 210.3 118 79.7
Psat4g154840 Pisum sativum HOM05D004380 ORTHO05D005134 1.4e-52 209.9 157 64.3
DCAR_007574 Daucus carota HOM05D004380 ORTHO05D005134 2.4e-52 209.1 149 66.4
Lalb_Chr04g0258181 Lupinus albus HOM05D004380 ORTHO05D005134 6.9e-52 207.6 157 61.1
CANSAT21G1629 Cannabis sativa HOM05D004380 ORTHO05D005134 9.1e-52 207.2 157 63.7
Pp3c3_10050 Physcomitrium patens HOM05D004380 ORTHO05D005134 1.2e-51 206.8 147 66.7
CiPaw.04G096200 Carya illinoinensis HOM05D004380 ORTHO05D005134 1.5e-51 206.5 120 78.3
TPR.G20578 Trifolium pratense HOM05D004380 ORTHO05D005134 1.5e-51 206.5 113 79.6
arahy.Tifrunner.gnm1.ann1.MH0ZUI Arachis hypogaea HOM05D004380 ORTHO05D005134 2.2e-50 202.6 113 78.8
Nitab4.5_0005084g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 6.5e-50 201.1 141 69.5
CARHR062710 Cardamine hirsuta HOM05D004380 ORTHO05D005134 8.5e-50 200.7 148 65.5
unitig_21.g20505 Utricularia gibba HOM05D004380 ORTHO05D005134 8.5e-50 200.7 147 66.7
CAN.G248.21 Capsicum annuum HOM05D004380 ORTHO05D005134 1.4e-47 193.4 149 63.1
AagrBONN_evm.TU.Sc2ySwM_117.3835 Anthoceros agrestis HOM05D004380 ORTHO05D005134 6.7e-47 191.0 147 62.6
SMO144G0180 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 6.3e-45 184.5 155 58.7
arahy.Tifrunner.gnm1.ann1.ARJY2C Arachis hypogaea HOM05D004380 ORTHO05D005134 5.3e-44 181.4 157 60.5
CBR_g26347 Chara braunii HOM05D004380 ORTHO05D005134 5.3e-44 181.4 156 59.0
SEGI_39298 Sequoiadendron giganteum HOM05D004380 ORTHO05D005134 5.3e-44 181.4 116 72.4
AUR62007222 Chenopodium quinoa HOM05D004380 ORTHO05D005134 6.9e-44 181.0 149 59.7
arahy.Tifrunner.gnm1.ann1.I1PL9V Arachis hypogaea HOM05D004380 ORTHO05D005134 2.0e-43 179.5 127 65.4
SMO118G0163 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 4.2e-41 171.8 153 57.5
AUR62018778 Chenopodium quinoa HOM05D004380 ORTHO05D005134 7.9e-40 167.5 115 67.0
CSS0001415 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 7.4e-38 161.0 86 81.4
CSS0037993 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 7.4e-38 161.0 86 81.4
THA.LOC104812727 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 1.3e-37 160.2 119 63.0
arahy.Tifrunner.gnm1.ann1.45D7QY Arachis hypogaea HOM05D004380 ORTHO05D005134 8.2e-37 157.5 133 58.6
arahy.Tifrunner.gnm1.ann1.MX4EXC Arachis hypogaea HOM05D004380 ORTHO05D005134 3.1e-36 155.6 157 51.6
Nitab4.5_0008421g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 3.5e-35 152.1 88 77.3
Cre01.g003487 Chlamydomonas reinhardtii HOM05D004380 ORTHO05D005134 1.4e-31 140.2 161 47.8
MCO15G532 Micromonas commoda HOM05D004380 ORTHO05D005134 1.0e-26 124.0 139 43.2
Sp5g21510 Schrenkiella parvula HOM05D004380 ORTHO05D005134 2.7e-24 115.9 98 57.1
Haze_08308 Corylus avellana HOM05D004380 ORTHO05D005134 4.0e-23 112.1 122 53.3
Potri.001G147100 Populus trichocarpa HOM05D004380 ORTHO05D005134 4.0e-23 112.1 105 56.2
PRCOL_00005638 Prasinoderma coloniale HOM05D004380 ORTHO05D005134 1.7e-21 106.7 148 40.5
Dinv40656 Davidia involucrata HOM05D000301 ORTHO05D000303 4.1e-20 102.1 56 80.4
AL3G52660 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 1.9e-17 93.2 66 60.6
MELO3C024775.2 Cucumis melo HOM05D004380 ORTHO05D005134 5.2e-15 85.1 68 63.2
Cfa026589 Carpinus fangiana HOM05D004380 ORTHO05D005134 1.7e-13 80.1 139 35.3
COL.COLO4_33038 Corchorus olitorius HOM05D004380 ORTHO05D005134 2.0e-11 73.2 60 63.3
C05p31200 Brassica napus HOM05D004380 ORTHO05D005134 1.2e-08 63.9 49 61.2


User provided reference genes

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