Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc66.55 Carica papaya HOM05D006403 ORTHO05D008130 1.0e-120 436.8 227 100.0
Ciclev10001887m.g Citrus clementina HOM05D006403 ORTHO05D008130 1.1e-82 310.5 165 94.5
Duzib177G0036 Durio zibethinus HOM05D006403 ORTHO05D008130 2.4e-82 309.3 165 93.3
Thecc.08G202600 Theobroma cacao HOM05D006403 ORTHO05D008130 3.2e-82 308.9 165 94.5
COL.COLO4_36653 Corchorus olitorius HOM05D006403 ORTHO05D008130 4.2e-82 308.5 334 56.3
Potri.013G114500 Populus trichocarpa HOM05D006403 ORTHO05D008130 7.1e-82 307.8 165 93.3
Gohir.A13G121700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 1.6e-81 306.6 165 91.5
Gohir.D13G125700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 1.6e-81 306.6 165 91.5
Gorai.013G140800 Gossypium raimondii HOM05D006403 ORTHO05D008130 1.6e-81 306.6 165 91.5
Oeu017876.2 Olea europaea HOM05D006403 ORTHO05D008130 1.6e-81 306.6 165 91.5
Manes.18G099900 Manihot esculenta HOM05D006403 ORTHO05D008130 2.7e-81 305.8 165 93.3
Nn8g40759 Nelumbo nucifera HOM05D006403 ORTHO05D008130 3.5e-81 305.4 163 92.6
Dinv41688 Davidia involucrata HOM05D006403 ORTHO05D008130 4.6e-81 305.1 165 92.1
SGA_v2.0_scaffold24G10549 Striga asiatica HOM05D006403 ORTHO05D008130 6.0e-81 304.7 165 90.3
CSS0028864 Camellia sinensis var. sinensis HOM05D006403 ORTHO05D008130 7.9e-81 304.3 165 91.5
ClCG09G010420 Citrullus lanatus HOM05D006403 ORTHO05D008130 1.3e-80 303.5 165 91.5
CANSAT78G0580 Cannabis sativa HOM05D006403 ORTHO05D008130 3.0e-80 302.4 162 91.4
Potri.019G085200 Populus trichocarpa HOM05D006403 ORTHO05D008130 3.9e-80 302.0 165 91.5
CiPaw.16G062500 Carya illinoinensis HOM05D006403 ORTHO05D008130 5.1e-80 301.6 165 91.5
ECA233G3842 Erigeron canadensis HOM05D006403 ORTHO05D008130 5.1e-80 301.6 165 90.3
Hund27413 Selenicereus undatus HOM05D006403 ORTHO05D008130 5.1e-80 301.6 165 91.5
GSVIVG01034503001 Vitis vinifera HOM05D006403 ORTHO05D008130 6.7e-80 301.2 166 91.6
PGR042G3834 Punica granatum HOM05D006403 ORTHO05D008130 8.7e-80 300.8 165 91.5
AUR62023390 Chenopodium quinoa HOM05D006403 ORTHO05D008130 1.1e-79 300.4 165 90.3
MELO3C023667.2 Cucumis melo HOM05D006403 ORTHO05D008130 1.1e-79 300.4 165 90.9
AUR62013765 Chenopodium quinoa HOM05D006403 ORTHO05D008130 1.9e-79 299.7 165 90.3
arahy.Tifrunner.gnm1.ann1.RC57KJ Arachis hypogaea HOM05D006403 ORTHO05D008130 3.3e-79 298.9 165 89.1
CsaV3_7G024130 Cucumis sativus L. HOM05D006403 ORTHO05D008130 3.3e-79 298.9 165 90.3
Nitab4.5_0000159g0220 Nicotiana tabacum HOM05D006403 ORTHO05D008130 3.3e-79 298.9 163 90.8
Rhsim08G0049700 Rhododendron simsii HOM05D006403 ORTHO05D008130 3.3e-79 298.9 165 89.7
Cfa018202 Carpinus fangiana HOM05D006403 ORTHO05D008130 5.6e-79 298.1 166 91.0
Duzib116G0580 Durio zibethinus HOM05D006403 ORTHO05D008130 5.6e-79 298.1 165 89.7
Sc23g0004870 Simmondsia chinensis HOM05D006403 ORTHO05D008130 7.4e-79 297.7 165 89.7
Solyc11g017200.2 Solanum lycopersicum HOM05D006403 ORTHO05D008130 9.6e-79 297.4 163 90.8
Sopen11g009110 Solanum pennellii HOM05D006403 ORTHO05D008130 9.6e-79 297.4 163 90.8
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 9.6e-79 297.4 165 89.1
CAN.G61.29 Capsicum annuum HOM05D006403 ORTHO05D008130 1.3e-78 297.0 163 90.8
Haze_17907 Corylus avellana HOM05D006403 ORTHO05D008130 1.3e-78 297.0 166 90.4
Eucgr.F02626 Eucalyptus grandis HOM05D006403 ORTHO05D008130 1.3e-78 297.0 177 86.4
HanXRQChr02g0040151 Helianthus annuus HOM05D006403 ORTHO05D008130 1.3e-78 297.0 165 89.1
Oeu000555.1 Olea europaea HOM05D006403 ORTHO05D008130 1.6e-78 296.6 165 89.1
MSTRG.25437 Avicennia marina HOM05D006403 ORTHO05D008130 2.1e-78 296.2 165 89.7
PGSC0003DMG400009235 Solanum tuberosum HOM05D006403 ORTHO05D008130 2.8e-78 295.8 163 90.2
Atru.chr13.1807 Acer truncatum HOM05D006403 ORTHO05D008130 3.7e-78 295.4 165 88.5
Atru.chr13.1815 Acer truncatum HOM05D006403 ORTHO05D008130 3.7e-78 295.4 165 88.5
Cc00_g04840 Coffea canephora HOM05D006403 ORTHO05D008130 3.7e-78 295.4 163 87.7
THA.LOC104800111 Tarenaya hassleriana HOM05D006403 ORTHO05D008130 3.7e-78 295.4 165 89.7
Peaxi162Scf00495g00011 Petunia axillaris HOM05D006403 ORTHO05D008130 6.2e-78 294.7 163 89.6
Sed0020052 Sechium edule HOM05D006403 ORTHO05D008130 6.2e-78 294.7 165 88.5
Lalb_Chr01g0010051 Lupinus albus HOM05D006403 ORTHO05D008130 1.1e-77 293.9 164 87.2
Lalb_Chr19g0129801 Lupinus albus HOM05D006403 ORTHO05D008130 1.4e-77 293.5 164 86.6
TWI32G0485 Tripterygium wilfordii HOM05D006403 ORTHO05D008130 1.4e-77 293.5 165 89.1
PSO732G0029 Papaver somniferum HOM05D006403 ORTHO05D008130 1.8e-77 293.1 164 86.0
RcHm_v2.0_Chr3g0495761 Rosa chinensis HOM05D006403 ORTHO05D008130 1.8e-77 293.1 165 87.9
FvH4_1g29740 Fragaria vesca HOM05D006403 ORTHO05D008130 2.4e-77 292.7 165 87.9
FAN19G1279 Fragaria x ananassa HOM05D006403 ORTHO05D008130 2.4e-77 292.7 165 87.9
FAN26G2688 Fragaria x ananassa HOM05D006403 ORTHO05D008130 2.4e-77 292.7 165 87.9
FAN28G0939 Fragaria x ananassa HOM05D006403 ORTHO05D008130 2.4e-77 292.7 165 87.9
Hma1.2p1_0072F.1_g038220 Hydrangea macrophylla HOM05D006403 ORTHO05D008130 2.4e-77 292.7 165 87.3
PSO675G8117 Papaver somniferum HOM05D006403 ORTHO05D008130 4.0e-77 292.0 164 86.0
SalBow7G4031 Salvia bowleyana HOM05D006403 ORTHO05D008130 5.3e-77 291.6 166 88.6
FAN23G0108 Fragaria x ananassa HOM05D006403 ORTHO05D008130 6.9e-77 291.2 165 87.3
QL02p034075 Quercus lobata HOM05D006403 ORTHO05D008130 6.9e-77 291.2 164 88.4
Aqoxy7G00855 Aquilegia oxysepala HOM05D006403 ORTHO05D008130 1.5e-76 290.0 163 85.9
Lj5g0000123 Lotus japonicus HOM05D006403 ORTHO05D008130 1.5e-76 290.0 164 87.2
Sabra13G0096800 Salix brachista HOM05D005981 ORTHO05D008130 1.5e-76 290.0 172 86.0
Lsat_1_v5_gn_1_12940 Lactuca sativa HOM05D006403 ORTHO05D008130 2.0e-76 289.7 166 88.0
A09p42040 Brassica napus HOM05D006403 ORTHO05D008130 2.6e-76 289.3 294 58.8
Thhalv10008318m.g Eutrema salsugineum HOM05D006403 ORTHO05D008130 2.6e-76 289.3 166 88.6
Sp1g20210 Schrenkiella parvula HOM05D006403 ORTHO05D008130 2.6e-76 289.3 300 58.3
Aa31LG7G6600 Aethionema arabicum HOM05D006403 ORTHO05D008130 3.4e-76 288.9 166 88.6
Carub.0001s2222 Capsella rubella HOM05D006403 ORTHO05D008130 3.4e-76 288.9 166 88.0
BraA09t39690Z Brassica rapa HOM05D006403 ORTHO05D008130 5.8e-76 288.1 294 58.8
C05p21830 Brassica napus HOM05D006403 ORTHO05D008130 7.6e-76 287.7 294 59.2
BolC5t30876H Brassica oleracea HOM05D006403 ORTHO05D008130 7.6e-76 287.7 294 59.2
Prupe.7G018000 Prunus persica HOM05D006403 ORTHO05D008130 7.6e-76 287.7 165 86.1
AL1G36240 Arabidopsis lyrata HOM05D006403 ORTHO05D008130 1.0e-75 287.3 166 88.0
arahy.Tifrunner.gnm1.ann1.3A12IQ Arachis hypogaea HOM05D006403 ORTHO05D008130 1.7e-75 286.6 164 87.2
BcaB03g14190 Brassica carinata HOM05D006403 ORTHO05D008130 2.2e-75 286.2 166 87.3
A07p14250 Brassica napus HOM05D006403 ORTHO05D008130 2.2e-75 286.2 166 87.3
C07p20970 Brassica napus HOM05D006403 ORTHO05D008130 2.2e-75 286.2 166 87.3
BraA07t29182Z Brassica rapa HOM05D006403 ORTHO05D008130 2.2e-75 286.2 166 87.3
AT1G22700 Arabidopsis thaliana HOM05D006403 ORTHO05D008130 3.8e-75 285.4 166 87.3
EL10Ac1g00740 Beta vulgaris HOM05D006403 ORTHO05D008130 6.5e-75 284.6 165 85.5
MD12G1013600 Malus domestica HOM05D006403 ORTHO05D008130 6.5e-75 284.6 164 85.4
Ca_10605_v3 Cicer arietinum L. HOM05D006403 ORTHO05D008130 1.9e-74 283.1 164 85.4
MD14G1011000 Malus domestica HOM05D006403 ORTHO05D008130 1.9e-74 283.1 164 85.4
ATR1127G194 Amborella trichopoda HOM05D006403 ORTHO05D008130 3.2e-74 282.3 165 83.0
CARHR023070 Cardamine hirsuta HOM05D006403 ORTHO05D008130 3.2e-74 282.3 166 86.1
Glyma.10G215300 Glycine max HOM05D006403 ORTHO05D008130 4.2e-74 282.0 159 88.7
Glyma.20G176400 Glycine max HOM05D006403 ORTHO05D008130 4.2e-74 282.0 159 88.7
Lj7A297T43 Lonicera japonica HOM05D006403 ORTHO05D008130 4.2e-74 282.0 176 81.8
Actinidia29416 Actinidia chinensis HOM05D006403 ORTHO05D008130 7.1e-74 281.2 153 90.8
Phvul.007G090400 Phaseolus vulgaris HOM05D006403 ORTHO05D008130 7.1e-74 281.2 159 88.1
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 9.3e-74 280.8 193 76.2
Medtr1g096230 Medicago truncatula HOM05D006403 ORTHO05D008130 2.1e-73 279.6 164 83.5
CDE07G1616 Ceratophyllum demersum HOM05D006403 ORTHO05D008130 2.7e-73 279.3 163 83.4
MBI17_g12885_MAGBIO Magnolia biondii HOM05D006403 ORTHO05D008130 3.5e-73 278.9 196 74.0
HPP92_025360 Vanilla planifolia HOM05D006403 ORTHO05D008130 1.0e-72 277.3 165 83.0
Migut.C01242 Erythranthe guttata HOM05D006403 ORTHO05D008130 3.9e-72 275.4 164 81.7
Psat6g186640 Pisum sativum HOM05D006403 ORTHO05D008130 8.7e-72 274.2 162 83.3
BcaC06g34984 Brassica carinata HOM05D006403 ORTHO05D008130 1.5e-71 273.5 166 84.3
BolC7t42628H Brassica oleracea HOM05D006403 ORTHO05D008130 4.3e-71 271.9 166 83.7
vmacro18286 Vaccinium macrocarpon HOM05D006403 ORTHO05D008130 2.0e-68 263.1 248 60.1
unitig_747.g21467 Utricularia gibba HOM05D006403 ORTHO05D008130 8.7e-64 247.7 165 76.4
TPR.G1762 Trifolium pratense HOM05D006403 ORTHO05D008130 2.2e-62 243.0 142 81.7
SEGI_04324 Sequoiadendron giganteum HOM05D006403 ORTHO05D008130 2.0e-60 236.5 163 68.7
Os10g0460900 Oryza sativa ssp. japonica HOM05D006403 ORTHO05D008130 1.1e-58 230.7 165 73.3
Zm00001eb320270 Zea mays HOM05D006403 ORTHO05D008130 2.1e-57 226.5 165 71.5
Pp3c2_18600 Physcomitrium patens HOM05D006403 ORTHO05D008130 8.8e-56 221.1 160 64.4
AagrBONN_evm.TU.Sc2ySwM_362.2277 Anthoceros agrestis HOM05D006403 ORTHO05D008130 1.1e-55 220.7 158 65.2
BcaB03g14188 Brassica carinata HOM05D006403 ORTHO05D008130 9.7e-55 217.6 166 72.9
Pp3c1_20680 Physcomitrium patens HOM05D006403 ORTHO05D008130 3.1e-53 212.6 159 62.9
SMO118G0451 Selaginella moellendorffii HOM05D006403 ORTHO05D008130 3.6e-49 199.1 158 58.9
Mapoly0015s0041 Marchantia polymorpha HOM05D006403 ORTHO05D008130 2.6e-44 183.0 158 55.1
CBR_g38402 Chara braunii HOM05D006403 ORTHO05D008130 5.0e-43 178.7 160 55.0
RcHm_v2.0_Chr7g0219671 Rosa chinensis HOM05D006403 ORTHO05D008130 6.1e-41 171.8 143 65.7
MCO16G319 Micromonas commoda HOM05D006403 ORTHO05D008130 4.0e-40 169.1 147 52.4
Cre12.g524300 Chlamydomonas reinhardtii HOM05D006403 ORTHO05D008130 1.8e-37 160.2 150 51.3
RcHm_v2.0_Chr2g0092511 Rosa chinensis HOM05D006403 ORTHO05D008130 1.0e-35 154.5 158 57.6
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 3.8e-27 125.9 72 88.9
PRCOL_00002033 Prasinoderma coloniale HOM05D006403 ORTHO05D008130 3.2e-26 122.9 150 39.3
RcHm_v2.0_Chr7g0199541 Rosa chinensis HOM05D006403 ORTHO05D008130 5.7e-23 112.1 65 84.6
Os08g0347500 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 2.3e-16 90.1 53 83.0
PGSC0003DMG400027069 Solanum tuberosum HOM05D005390 ORTHO05D007086 1.7e-06 57.4 134 27.6
Solyc06g071850.3 Solanum lycopersicum HOM05D005390 ORTHO05D007086 2.9e-06 56.6 134 26.9
Nitab4.5_0014349g0010 Nicotiana tabacum HOM05D005390 ORTHO05D007086 3.7e-06 56.2 134 26.9
Sopen06g028130 Solanum pennellii HOM05D005390 ORTHO05D007086 3.7e-06 56.2 134 26.9


User provided reference genes

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