Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc66.54 Carica papaya HOM05D005981 ORTHO05D007551 1.2e-83 313.2 162 100.0
CiPaw.16G062400 Carya illinoinensis HOM05D005981 ORTHO05D007551 2.2e-16 89.7 88 53.4
Duzib177G0330 Durio zibethinus HOM05D005981 ORTHO05D007551 3.7e-16 89.0 127 46.5
Manes.18G100000 Manihot esculenta HOM05D005981 ORTHO05D007551 6.3e-16 88.2 111 49.5
Gohir.A05G274500 Gossypium hirsutum HOM05D005981 ORTHO05D007551 1.8e-15 86.7 130 45.4
Gohir.D05G276700 Gossypium hirsutum HOM05D005981 ORTHO05D007551 1.8e-15 86.7 136 44.1
Thecc.08G202800 Theobroma cacao HOM05D005981 ORTHO05D007551 3.1e-15 85.9 110 49.1
Gorai.009G289700 Gossypium raimondii HOM05D005981 ORTHO05D007551 4.1e-15 85.5 130 44.6
Sabra13G0096800 Salix brachista HOM05D005981 ORTHO05D008130 4.1e-15 85.5 130 42.3
Haze_17917 Corylus avellana HOM05D005981 ORTHO05D007551 7.0e-15 84.7 87 52.9
Aqoxy5G02601 Aquilegia oxysepala HOM05D005981 ORTHO05D007551 1.2e-14 84.0 86 52.3
GSVIVG01034499001 Vitis vinifera HOM05D005981 ORTHO05D007551 1.6e-14 83.6 83 56.6
Atru.chr13.1806 Acer truncatum HOM05D005981 ORTHO05D007551 2.7e-14 82.8 79 54.4
Atru.chr13.1816 Acer truncatum HOM05D005981 ORTHO05D007551 2.7e-14 82.8 79 54.4
CANSAT56G4197 Cannabis sativa HOM05D005981 ORTHO05D007551 2.7e-14 82.8 121 39.7
Dinv41690 Davidia involucrata HOM05D005981 ORTHO05D007551 3.5e-14 82.4 113 45.1
Ciclev10001512m.g Citrus clementina HOM05D005981 ORTHO05D007551 5.9e-14 81.6 131 41.2
QL02p034064 Quercus lobata HOM05D005981 ORTHO05D007551 1.7e-13 80.1 106 48.1
Potri.013G114400 Populus trichocarpa HOM05D005981 ORTHO05D007551 2.2e-13 79.7 80 51.2
Actinidia23324 Actinidia chinensis HOM05D005981 ORTHO05D007551 5.0e-13 78.6 83 53.0
ClCG11G008230 Citrullus lanatus HOM05D005981 ORTHO05D007551 5.0e-13 78.6 98 45.9
CSS0002602 Camellia sinensis var. sinensis HOM05D005981 ORTHO05D007551 5.5e-12 75.1 87 49.4
CSS0046436 Camellia sinensis var. sinensis HOM05D005981 ORTHO05D007551 5.5e-12 75.1 87 49.4
Sc23g0001130 Simmondsia chinensis HOM05D005981 ORTHO05D007551 9.5e-12 74.3 83 48.2
Rhsim04G0161600 Rhododendron simsii HOM05D005981 ORTHO05D007551 1.2e-11 73.9 63 57.1
Rhsim06G0097100 Rhododendron simsii HOM05D005981 ORTHO05D007551 1.2e-11 73.9 63 57.1
TAR381G0932 Trochodendron aralioides HOM05D005981 ORTHO05D007551 1.2e-11 73.9 44 75.0
MBI17_g15293_MAGBIO Magnolia biondii HOM05D005981 ORTHO05D007551 2.1e-11 73.2 62 56.5
Eucgr.F04135 Eucalyptus grandis HOM05D005981 ORTHO05D007551 3.6e-11 72.4 44 72.7
MSTRG.1511 Avicennia marina HOM05D005981 ORTHO05D007551 4.7e-11 72.0 119 42.0
EL10Ac1g00070 Beta vulgaris HOM05D005981 ORTHO05D007551 4.7e-11 72.0 113 39.8
PGR119G0141 Punica granatum HOM05D005981 ORTHO05D007551 4.7e-11 72.0 109 42.2
Ah.05g178000 Amaranthus hybridus HOM05D005981 ORTHO05D007551 6.1e-11 71.6 41 73.2
MELO3C008115.2 Cucumis melo HOM05D005981 ORTHO05D007551 6.1e-11 71.6 108 40.7
CsaV3_2G033430 Cucumis sativus L. HOM05D005981 ORTHO05D007551 6.1e-11 71.6 129 38.0
Phvul.004G084494 Phaseolus vulgaris HOM05D005981 ORTHO05D007551 6.1e-11 71.6 48 68.8
Migut.C01243 Erythranthe guttata HOM05D005981 ORTHO05D007551 8.0e-11 71.2 44 70.5
Lsat_1_v5_gn_3_113620 Lactuca sativa HOM05D005981 ORTHO05D007551 8.0e-11 71.2 66 53.0
Lsat_1_v5_gn_7_7380 Lactuca sativa HOM05D005981 ORTHO05D007551 8.0e-11 71.2 66 53.0
Lsat_1_v5_gn_1_10481 Lactuca sativa HOM05D005981 ORTHO05D007551 1.0e-10 70.9 48 64.6
MD10G1046800 Malus domestica HOM05D005981 ORTHO05D007551 1.0e-10 70.9 48 66.7
Prupe.8G055700 Prunus persica HOM05D005981 ORTHO05D007551 1.0e-10 70.9 44 72.7
Lalb_Chr03g0035891 Lupinus albus HOM05D005981 ORTHO05D007551 1.4e-10 70.5 84 46.4
PSO017G5512 Papaver somniferum HOM05D005981 ORTHO05D007551 1.4e-10 70.5 44 72.7
Hund27079 Selenicereus undatus HOM05D005981 ORTHO05D007551 1.4e-10 70.5 47 66.0
SGA_v2.0_scaffold118G32466 Striga asiatica HOM05D005981 ORTHO05D007551 1.4e-10 70.5 44 72.7
Solyc11g017230.2 Solanum lycopersicum HOM05D005981 ORTHO05D007551 1.8e-10 70.1 44 68.2
Sopen11g009130 Solanum pennellii HOM05D005981 ORTHO05D007551 1.8e-10 70.1 44 68.2
HanXRQChr04g0107411 Helianthus annuus HOM05D005981 ORTHO05D007551 2.3e-10 69.7 48 66.7
VMungo0464G0319 Vigna mungo HOM05D005981 ORTHO05D007551 2.3e-10 69.7 45 68.9
CDE06G1238 Ceratophyllum demersum HOM05D005981 ORTHO05D007551 3.0e-10 69.3 43 72.1
AUR62004659 Chenopodium quinoa HOM05D005981 ORTHO05D007551 4.0e-10 68.9 110 41.8
Lsat_1_v5_gn_3_113600 Lactuca sativa HOM05D005981 ORTHO05D007551 4.0e-10 68.9 41 73.2
AUR62023576 Chenopodium quinoa HOM05D005981 ORTHO05D007551 5.2e-10 68.6 48 62.5
CAN.G61.32 Capsicum annuum HOM05D005981 ORTHO05D007551 8.8e-10 67.8 44 65.9
Lj2g0016315 Lotus japonicus HOM05D005981 ORTHO05D007551 8.8e-10 67.8 44 65.9
AT1G34380 Arabidopsis thaliana HOM05D005981 ORTHO05D007551 1.2e-09 67.4 44 65.9
BcaC08g43776 Brassica carinata HOM05D005981 ORTHO05D007551 1.2e-09 67.4 44 68.2
A09p32090 Brassica napus HOM05D005981 ORTHO05D007551 1.2e-09 67.4 44 68.2
BolC6t36287H Brassica oleracea HOM05D005981 ORTHO05D007551 1.2e-09 67.4 44 68.2
BraA09t38748Z Brassica rapa HOM05D005981 ORTHO05D007551 1.2e-09 67.4 44 68.2
Thhalv10008072m.g Eutrema salsugineum HOM05D005981 ORTHO05D007551 1.2e-09 67.4 44 68.2
FvH4_2g12160 Fragaria vesca HOM05D005981 ORTHO05D007551 1.2e-09 67.4 43 69.8
FAN27G0258 Fragaria x ananassa HOM05D005981 ORTHO05D007551 1.2e-09 67.4 43 69.8
Sp1g29600 Schrenkiella parvula HOM05D005981 ORTHO05D007551 1.2e-09 67.4 44 68.2
arahy.Tifrunner.gnm1.ann1.SEU8EV Arachis hypogaea HOM05D005981 ORTHO05D007551 1.5e-09 67.0 44 70.5
C06p11540 Brassica napus HOM05D005981 ORTHO05D007551 1.5e-09 67.0 44 65.9
Carub.0001s3253 Capsella rubella HOM05D005981 ORTHO05D007551 1.5e-09 67.0 116 39.7
CARHR033840 Cardamine hirsuta HOM05D005981 ORTHO05D007551 1.5e-09 67.0 44 65.9
FAN20G1782 Fragaria x ananassa HOM05D005981 ORTHO05D007551 1.5e-09 67.0 43 67.4
FAN24G2303 Fragaria x ananassa HOM05D005981 ORTHO05D007551 2.0e-09 66.6 43 69.8
BcaB07g33127 Brassica carinata HOM05D005981 ORTHO05D007551 2.6e-09 66.2 44 65.9
Sed0004103 Sechium edule HOM05D005981 ORTHO05D007551 2.6e-09 66.2 47 61.7
THA.LOC104806782 Tarenaya hassleriana HOM05D005981 ORTHO05D007551 3.4e-09 65.9 44 68.2
Aa31LG6G8450 Aethionema arabicum HOM05D005981 ORTHO05D007551 4.4e-09 65.5 85 43.5
AL1G48940 Arabidopsis lyrata HOM05D005981 ORTHO05D007551 4.4e-09 65.5 109 37.6
RcHm_v2.0_Chr6g0272141 Rosa chinensis HOM05D005981 ORTHO05D007551 4.4e-09 65.5 42 69.0
Glyma.16G156300 Glycine max HOM05D005981 ORTHO05D007551 7.5e-09 64.7 44 65.9
ATR1134G043 Amborella trichopoda HOM05D005981 ORTHO05D007551 9.8e-09 64.3 44 65.9
arahy.Tifrunner.gnm1.ann1.VB64T6 Arachis hypogaea HOM05D005981 ORTHO05D007551 9.8e-09 64.3 44 68.2
unitig_747.g21468 Utricularia gibba HOM05D005981 ORTHO05D007551 9.8e-09 64.3 43 67.4
Cc00_g04830 Coffea canephora HOM05D005981 ORTHO05D007551 1.3e-08 63.9 44 65.9
Os01g0874800 Oryza sativa ssp. japonica HOM05D005981 ORTHO05D007551 1.3e-08 63.9 47 57.4
Nitab4.5_0000159g0230 Nicotiana tabacum HOM05D005981 ORTHO05D007551 2.2e-08 63.2 34 82.4
Nitab4.5_0006099g0030 Nicotiana tabacum HOM05D005981 ORTHO05D007551 2.2e-08 63.2 34 82.4
Lj7A293G47 Lonicera japonica HOM05D005981 ORTHO05D007551 2.8e-08 62.8 44 59.1
Zm00001eb146190 Zea mays HOM05D005981 ORTHO05D007551 3.7e-08 62.4 43 58.1
arahy.Tifrunner.gnm1.ann1.XJI1XC Arachis hypogaea HOM05D005981 ORTHO05D007551 1.1e-07 60.8 41 68.3
Zm00001eb366510 Zea mays HOM05D005981 ORTHO05D007551 1.1e-07 60.8 42 59.5
Zm00001eb366480 Zea mays HOM05D005981 ORTHO05D007551 1.4e-07 60.5 40 60.0
Ca_13999_v3 Cicer arietinum L. HOM05D002058 ORTHO05D009216 2.4e-07 59.7 45 62.2
Ca_14000_v3 Cicer arietinum L. HOM05D005981 ORTHO05D007551 2.4e-07 59.7 45 62.2
Ca_27969_v3 Cicer arietinum L. HOM05D005981 ORTHO05D007551 2.4e-07 59.7 45 62.2
TPR.G36660 Trifolium pratense HOM05D005981 ORTHO05D007551 2.4e-07 59.7 45 62.2
HPP92_000083 Vanilla planifolia HOM05D005981 ORTHO05D007551 9.2e-07 57.8 43 58.1
Medtr6g033525 Medicago truncatula HOM05D005981 ORTHO05D007551 4.5e-06 55.5 44 59.1


User provided reference genes

Program Settings