Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc63.33 Carica papaya HOM05D001141 ORTHO05D024843 2.6e-92 342.0 175 100.0
GSVIVG01023839001 Vitis vinifera HOM05D001141 ORTHO05D001088 3.0e-27 125.9 91 71.4
Thecc.02G149900 Theobroma cacao HOM05D001141 ORTHO05D001088 3.6e-25 119.0 91 68.1
GSVIVG01030885001 Vitis vinifera HOM05D001141 ORTHO05D001088 6.2e-25 118.2 91 67.0
Manes.03G095900 Manihot esculenta HOM05D001141 ORTHO05D001088 1.8e-24 116.7 91 65.9
Potri.009G170700 Populus trichocarpa HOM05D001141 ORTHO05D001088 6.8e-24 114.8 92 65.2
COL.COLO4_10145 Corchorus olitorius HOM05D001141 ORTHO05D001088 3.4e-23 112.5 91 64.8
Atru.chr10.102 Acer truncatum HOM05D001141 ORTHO05D001088 4.4e-23 112.1 92 65.2
Atru.chr10.121 Acer truncatum HOM05D001141 ORTHO05D001088 4.4e-23 112.1 92 65.2
Ciclev10028261m.g Citrus clementina HOM05D001141 ORTHO05D001088 3.7e-22 109.0 91 61.5
Duzib132G0531 Durio zibethinus HOM05D001141 ORTHO05D001088 8.3e-22 107.8 91 65.9
Sabra04G0141500 Salix brachista HOM05D001141 ORTHO05D001088 1.1e-21 107.5 91 62.6
TWI75G0513 Tripterygium wilfordii HOM05D001141 ORTHO05D001088 7.1e-21 104.8 88 64.8
TAR381G0382 Trochodendron aralioides HOM05D001141 ORTHO05D001088 7.1e-21 104.8 91 62.6
Gohir.D01G013000 Gossypium hirsutum HOM05D001141 ORTHO05D001088 2.7e-20 102.8 91 61.5
Potri.004G209800 Populus trichocarpa HOM05D001141 ORTHO05D001088 2.7e-20 102.8 91 60.4
Duzib248G1575 Durio zibethinus HOM05D001141 ORTHO05D001088 6.0e-20 101.7 91 61.5
PGR142G2255 Punica granatum HOM05D001141 ORTHO05D001088 3.0e-19 99.4 91 60.4
AT4G38130 Arabidopsis thaliana HOM05D001141 ORTHO05D001088 3.9e-19 99.0 91 53.8
CiPaw.05G096100 Carya illinoinensis HOM05D001141 ORTHO05D001088 6.6e-19 98.2 91 57.1
Gohir.A01G011800 Gossypium hirsutum HOM05D001141 ORTHO05D001088 8.6e-19 97.8 91 60.4
Sp7g37620 Schrenkiella parvula HOM05D001141 ORTHO05D001088 1.9e-18 96.7 89 52.8
Thhalv10025146m.g Eutrema salsugineum HOM05D001141 ORTHO05D001088 7.3e-18 94.7 91 50.5
Carub.0007s0002 Capsella rubella HOM05D001141 ORTHO05D001088 3.6e-17 92.4 91 52.7
AL7G10020 Arabidopsis lyrata HOM05D001141 ORTHO05D001088 4.7e-17 92.0 94 51.1
CARHR293890 Cardamine hirsuta HOM05D001141 ORTHO05D001088 6.2e-17 91.7 89 51.7
THA.LOC104804076 Tarenaya hassleriana HOM05D001141 ORTHO05D001088 2.3e-16 89.7 88 54.5
Cfa004935 Carpinus fangiana HOM05D001141 ORTHO05D001088 6.8e-16 88.2 93 55.9
Gorai.002G014800 Gossypium raimondii HOM05D001141 ORTHO05D001088 2.0e-15 86.7 123 44.7
Nn5g31097 Nelumbo nucifera HOM05D001141 ORTHO05D001088 2.6e-15 86.3 92 53.3
Aqoxy6G02435 Aquilegia oxysepala HOM05D001141 ORTHO05D001088 1.7e-14 83.6 95 51.6
CANSAT25G2399 Cannabis sativa HOM05D001141 ORTHO05D001088 5.4e-13 78.6 90 52.2
ClCG02G010680 Citrullus lanatus HOM05D001141 ORTHO05D001088 1.6e-12 77.0 86 50.0
PSO017G4926 Papaver somniferum HOM05D001141 ORTHO05D001088 1.6e-12 77.0 97 47.4
PSO170G3328 Papaver somniferum HOM05D001141 ORTHO05D001088 2.1e-12 76.6 97 47.4
Prupe.8G183700 Prunus persica HOM05D001141 ORTHO05D001088 2.7e-12 76.3 94 53.2
MBI18_g02829_MAGBIO Magnolia biondii HOM05D001141 ORTHO05D001088 3.5e-12 75.9 104 47.1
arahy.Tifrunner.gnm1.ann1.CW9Q3P Arachis hypogaea HOM05D001141 ORTHO05D001088 7.8e-12 74.7 91 50.5
FAN27G0305 Fragaria x ananassa HOM05D001141 ORTHO05D001088 1.0e-11 74.3 77 57.1
PGSC0003DMG400029646 Solanum tuberosum HOM05D001141 ORTHO05D001088 2.3e-11 73.2 106 43.4
MD10G1145400 Malus domestica HOM05D001141 ORTHO05D001088 3.0e-11 72.8 77 57.1
Phvul.009G115300 Phaseolus vulgaris HOM05D001141 ORTHO05D001088 5.1e-11 72.0 90 50.0
CAN.G500.92 Capsicum annuum HOM05D001141 ORTHO05D001088 6.6e-11 71.6 90 47.8
FAN15G2245 Fragaria x ananassa HOM05D001141 ORTHO05D001088 6.6e-11 71.6 77 55.8
FAN27G2192 Fragaria x ananassa HOM05D001141 ORTHO05D001088 6.6e-11 71.6 77 55.8
Hma1.2p1_1877F.1_g306320 Hydrangea macrophylla HOM05D001141 ORTHO05D001088 6.6e-11 71.6 69 55.1
RcHm_v2.0_Chr6g0281731 Rosa chinensis HOM05D001141 ORTHO05D001088 6.6e-11 71.6 89 49.4
Eucgr.I01553 Eucalyptus grandis HOM05D001141 ORTHO05D001088 8.6e-11 71.2 69 56.5
Haze_02477 Corylus avellana HOM05D001141 ORTHO05D001088 1.5e-10 70.5 137 36.5
Sed0025743 Sechium edule HOM05D001141 ORTHO05D001088 1.5e-10 70.5 84 46.4
CsaV3_6G009890 Cucumis sativus L. HOM05D001141 ORTHO05D001088 2.5e-10 69.7 86 48.8
MD05G1146000 Malus domestica HOM05D001141 ORTHO05D001088 2.5e-10 69.7 77 53.2
Sc09g0004820 Simmondsia chinensis HOM05D001141 ORTHO05D001088 2.5e-10 69.7 89 50.6
vmacro21733 Vaccinium macrocarpon HOM05D001141 ORTHO05D024843 3.3e-10 69.3 91 50.5
Aa31LG6G16950 Aethionema arabicum HOM05D001141 ORTHO05D001088 4.3e-10 68.9 105 40.0
Lj1g0013621 Lotus japonicus HOM05D001141 ORTHO05D001088 7.3e-10 68.2 86 46.5
Solyc09g091440.3 Solanum lycopersicum HOM05D001141 ORTHO05D001088 7.3e-10 68.2 90 48.9
Sopen09g034370 Solanum pennellii HOM05D001141 ORTHO05D001088 7.3e-10 68.2 90 48.9
Actinidia17098 Actinidia chinensis HOM05D001141 ORTHO05D001088 9.6e-10 67.8 91 49.5
Lj4A814G50 Lonicera japonica HOM05D001141 ORTHO05D024843 9.6e-10 67.8 73 52.1
Actinidia15536 Actinidia chinensis HOM05D001141 ORTHO05D001088 1.2e-09 67.4 91 48.4
FvH4_2g17240 Fragaria vesca HOM05D001141 ORTHO05D001088 1.2e-09 67.4 78 55.1
FAN24G0136 Fragaria x ananassa HOM05D001141 ORTHO05D001088 1.2e-09 67.4 78 55.1
Nitab4.5_0011776g0010 Nicotiana tabacum HOM05D001141 ORTHO05D001088 1.2e-09 67.4 90 46.7
Peaxi162Scf00047g01232 Petunia axillaris HOM05D001141 ORTHO05D001088 1.2e-09 67.4 90 46.7
Psat2g000240 Pisum sativum HOM05D001141 ORTHO05D001088 1.6e-09 67.0 87 48.3
Rhsim06G0000400 Rhododendron simsii HOM05D001141 ORTHO05D001088 2.1e-09 66.6 91 49.5
Sed0000114 Sechium edule HOM05D001141 ORTHO05D001088 2.1e-09 66.6 88 46.6
BraA01t04514Z Brassica rapa HOM05D001141 ORTHO05D001088 4.7e-09 65.5 68 50.0
Cfa014173 Carpinus fangiana HOM05D001141 ORTHO05D001088 4.7e-09 65.5 91 47.3
MELO3C013472.2 Cucumis melo HOM05D001141 ORTHO05D001088 4.7e-09 65.5 86 46.5
QL02p016471 Quercus lobata HOM05D001141 ORTHO05D001088 8.1e-09 64.7 91 46.2
BolC1t05736H Brassica oleracea HOM05D001141 ORTHO05D001088 1.1e-08 64.3 67 46.3
A01p40790 Brassica napus HOM05D001141 ORTHO05D001088 1.4e-08 63.9 68 48.5
BNapus_Darmor_BZH_scaffold_78p00920 Brassica napus HOM05D001141 ORTHO05D001088 1.4e-08 63.9 68 48.5
DCAR_013350 Daucus carota HOM05D001141 ORTHO05D024843 3.1e-08 62.8 92 46.7
DCAR_013351 Daucus carota HOM05D001141 ORTHO05D001088 3.1e-08 62.8 92 46.7
Dinv09862 Davidia involucrata HOM05D001141 ORTHO05D001088 3.1e-08 62.8 70 54.3
CiPaw.08G079500 Carya illinoinensis HOM05D001141 ORTHO05D001088 4.0e-08 62.4 91 46.2
DCAR_013349 Daucus carota HOM05D001141 ORTHO05D001088 8.9e-08 61.2 91 47.3
Haze_22897 Corylus avellana HOM05D001141 ORTHO05D001088 1.5e-07 60.5 43 72.1
BcaC09g47788 Brassica carinata HOM05D001141 ORTHO05D001088 2.6e-07 59.7 68 45.6
CSS0039104 Camellia sinensis var. sinensis HOM05D001141 ORTHO05D001088 3.4e-07 59.3 43 72.1
Nitab4.5_0002284g0020 Nicotiana tabacum HOM05D001141 ORTHO05D001088 4.4e-07 58.9 85 43.5
Cc07_g18850 Coffea canephora HOM05D001141 ORTHO05D001088 7.6e-07 58.2 92 44.6
Phvul.002G054700 Phaseolus vulgaris HOM05D001141 ORTHO05D001088 7.6e-07 58.2 89 46.1
MD05G1149000 Malus domestica HOM05D001141 ORTHO05D001088 9.9e-07 57.8 60 56.7
Glyma.11G000300 Glycine max HOM05D001141 ORTHO05D001088 2.9e-06 56.2 89 42.7
Glyma.01G245100 Glycine max HOM05D001141 ORTHO05D001088 3.8e-06 55.8 89 40.4
CiPaw.07G129700 Carya illinoinensis HOM05D001141 ORTHO05D001088 6.4e-06 55.1 91 40.7
Cpa.g.sc2.86 Carica papaya HOM05D000003 ORTHO05D000004 8.4e-06 54.7 49 49.0


User provided reference genes

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