Gene: Sopen09g034370

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen09g034370
  • Transcript Identifier Sopen09g034370.1
  • Gene Type Coding gene
  • Location Spenn-ch09 : 82387351-82391680 : negative

Gene Family Information

  • ID HOM05D001141
  • #Genes/#Species 542/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen09g034370.1

Descriptions

  • Description Encodes a histone deacetylase that enhances AtERF7-mediated transcriptional repression. Binds SIM3 and ERF7. Expressed in the nucleus in most tissues examined and throughout the life of the plant. Involved in jasmonic acid and ethylene dependent pathogen resistance. The sequence in GenBank has 17 AG dinucleotide repeats missing, which is also missing in Ler shotgun sequence from Cereon. Although it is annotated to be in Columbia, the GB sequence is probably not of Columbia origin. Plays a role in embryogenesis as mutants grown at higher temperatures display abnormalities in the organization of the root and shoot. Plant lines expressing an RNAi construct targeted against HDA19 shows some resistance to agrobacterium-mediated root transformation. | histone deacetylase 1 (HD1) | CONTAINS InterPro DOMAIN/s: Histone deacetylase , Histone deacetylase superfamily | BEST Arabidopsis thaliana protein match is: histone deacetylase 6
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016575
IEA
InterProhistone deacetylation
GO:0009294
ISO
PLAZA Integrative OrthologyDNA mediated transformation AT4G38130
GO:0045892
ISO
PLAZA Integrative Orthologynegative regulation of transcription, DNA-templated AT4G38130
GO:1901001
ISO
PLAZA Integrative Orthologynegative regulation of response to salt stress AT4G38130
GO:0016573
ISO
PLAZA Integrative Orthologyhistone acetylation AT4G38130
GO:0009861
ISO
PLAZA Integrative Orthologyjasmonic acid and ethylene-dependent systemic resistance AT4G38130
GO:0042742
ISO
PLAZA Integrative Orthologydefense response to bacterium AT4G38130
GO:1902459
ISO
PLAZA Integrative Orthologypositive regulation of stem cell population maintenance AT4G38130
GO:2000026
ISO
PLAZA Integrative Orthologyregulation of multicellular organismal development AT4G38130

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004407
IEA
InterProhistone deacetylase activity
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT4G38130

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT4G38130
GO:0000118
ISO
PLAZA Integrative Orthologyhistone deacetylase complex AT4G38130

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR037138 Histone deacetylase domain superfamily
IPR023801 Histone deacetylase domain
IPR003084 Histone deacetylase
IPR023696 Ureohydrolase domain superfamily
IPR000286 Histone deacetylase family
Mapman id Description
12.3.2.1.1.2.1 Chromatin organisation.post-translational histone modification.histone deacetylation.HD1 histone deacetylase family.class-I histone deacetylase activities.SNL-HDA19 histone deacetylase complex.deacetylase component HDA19
12.3.2.1.1.3 Chromatin organisation.post-translational histone modification.histone deacetylation.HD1 histone deacetylase family.class-I histone deacetylase activities.histone deacetylase (HDA8)