Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc62.126 Carica papaya HOM05D003089 ORTHO05D003544 0.0e+00 1273.8 685 100.0
Thecc.02G123600 Theobroma cacao HOM05D003089 ORTHO05D003544 1.2e-268 929.9 733 73.1
THA.LOC104804915 Tarenaya hassleriana HOM05D003089 ORTHO05D003544 2.6e-268 928.7 731 72.5
COL.COLO4_32443 Corchorus olitorius HOM05D003089 ORTHO05D003544 5.7e-268 927.5 732 72.5
Duzib052G1069 Durio zibethinus HOM05D003089 ORTHO05D003544 7.5e-268 927.2 732 73.1
Carub.0001s3852 Capsella rubella HOM05D003089 ORTHO05D003544 1.1e-266 923.3 731 71.1
CARHR039330 Cardamine hirsuta HOM05D003089 ORTHO05D003544 4.1e-266 921.4 731 71.7
Duzib132G0336 Durio zibethinus HOM05D003089 ORTHO05D003544 1.2e-265 919.8 737 73.0
Dinv42085 Davidia involucrata HOM05D003089 ORTHO05D003544 2.7e-265 918.7 746 70.8
Thhalv10011177m.g Eutrema salsugineum HOM05D003089 ORTHO05D003544 1.1e-263 913.3 731 70.7
Sp1g36200 Schrenkiella parvula HOM05D003089 ORTHO05D003544 9.5e-263 910.2 729 70.1
Prupe.8G100100 Prunus persica HOM05D003089 ORTHO05D003544 1.4e-261 906.4 733 70.4
Aa31LG10G4610 Aethionema arabicum HOM05D003089 ORTHO05D003544 2.3e-261 905.6 775 67.1
Ciclev10027664m.g Citrus clementina HOM05D003089 ORTHO05D003544 4.0e-261 904.8 733 71.8
Gohir.D04G158700 Gossypium hirsutum HOM05D003089 ORTHO05D003544 4.9e-259 897.9 731 71.5
Manes.15G165000 Manihot esculenta HOM05D003089 ORTHO05D003544 1.1e-258 896.7 732 70.4
Gorai.012G146100 Gossypium raimondii HOM05D003089 ORTHO05D003544 2.4e-258 895.6 731 71.4
CiPaw.06G137000 Carya illinoinensis HOM05D003089 ORTHO05D003544 3.1e-258 895.2 744 68.7
MD05G1068200 Malus domestica HOM05D003089 ORTHO05D003544 7.0e-258 894.0 731 68.5
Gohir.A04G117000 Gossypium hirsutum HOM05D003089 ORTHO05D003544 1.0e-256 890.2 731 71.1
BolC5t32215H Brassica oleracea HOM05D003089 ORTHO05D003544 9.5e-255 883.6 729 69.4
BcaC05g27516 Brassica carinata HOM05D003089 ORTHO05D003544 8.0e-254 880.6 729 69.3
BcaC08g43133 Brassica carinata HOM05D003089 ORTHO05D003544 1.8e-253 879.4 730 69.2
C05p34900 Brassica napus HOM05D003089 ORTHO05D003544 2.3e-253 879.0 729 69.1
BcaB07g33678 Brassica carinata HOM05D003089 ORTHO05D003544 3.0e-253 878.6 730 68.9
C06p04080 Brassica napus HOM05D003089 ORTHO05D003544 3.0e-253 878.6 732 68.9
BolC6t35540H Brassica oleracea HOM05D003089 ORTHO05D003544 8.9e-253 877.1 730 69.2
AL1G56300 Arabidopsis lyrata HOM05D003089 ORTHO05D003544 1.5e-252 876.3 737 67.8
Sabra09G0087300 Salix brachista HOM05D003089 ORTHO05D003544 1.5e-252 876.3 738 68.8
Actinidia00513 Actinidia chinensis HOM05D003089 ORTHO05D003544 2.6e-252 875.5 735 67.8
QL11p043039 Quercus lobata HOM05D003089 ORTHO05D003544 7.5e-252 874.0 747 67.6
Potri.004G152400 Populus trichocarpa HOM05D003089 ORTHO05D003544 2.9e-251 872.1 739 69.1
CANSAT25G2870 Cannabis sativa HOM05D003089 ORTHO05D003544 3.7e-251 871.7 747 66.8
Potri.009G113700 Populus trichocarpa HOM05D003089 ORTHO05D003544 6.4e-251 870.9 738 68.2
MD10G1078200 Malus domestica HOM05D003089 ORTHO05D003544 1.1e-250 870.2 731 67.3
AT1G49340 Arabidopsis thaliana HOM05D003089 ORTHO05D003544 7.0e-250 867.5 733 67.9
BraA06t23597Z Brassica rapa HOM05D003089 ORTHO05D003544 2.0e-249 865.9 738 68.3
A06p03880 Brassica napus HOM05D003089 ORTHO05D003544 1.0e-248 863.6 738 68.3
Sabra04G0101100 Salix brachista HOM05D003089 ORTHO05D003544 1.2e-246 856.7 739 67.7
FAN24G1972 Fragaria x ananassa HOM05D003089 ORTHO05D003544 1.4e-245 853.2 733 66.8
Haze_02363 Corylus avellana HOM05D003089 ORTHO05D003544 2.3e-245 852.4 849 60.8
TAR622G0009 Trochodendron aralioides HOM05D003089 ORTHO05D003544 6.8e-245 850.9 743 66.4
FAN27G3350 Fragaria x ananassa HOM05D003089 ORTHO05D003544 1.2e-244 850.1 734 66.6
CSS0027140 Camellia sinensis var. sinensis HOM05D003089 ORTHO05D003544 9.8e-244 847.0 739 66.8
TAR369G0041 Trochodendron aralioides HOM05D003089 ORTHO05D003544 9.8e-244 847.0 747 66.0
CSS0026532 Camellia sinensis var. sinensis HOM05D003089 ORTHO05D003544 3.7e-243 845.1 739 66.7
FAN15G0570 Fragaria x ananassa HOM05D003089 ORTHO05D003544 6.4e-243 844.3 747 65.7
Lalb_Chr23g0265471 Lupinus albus HOM05D003089 ORTHO05D003544 4.1e-242 841.6 732 67.3
FvH4_2g08470 Fragaria vesca HOM05D003089 ORTHO05D003544 5.4e-242 841.3 732 65.6
RcHm_v2.0_Chr6g0263811 Rosa chinensis HOM05D003089 ORTHO05D003544 7.0e-242 840.9 734 66.3
FAN24G2674 Fragaria x ananassa HOM05D003089 ORTHO05D003544 9.2e-242 840.5 732 65.6
A05p20670 Brassica napus HOM05D003089 ORTHO05D003544 2.1e-241 839.3 729 66.1
BraA05t20975Z Brassica rapa HOM05D003089 ORTHO05D003544 2.1e-241 839.3 729 66.1
Nn3g17070 Nelumbo nucifera HOM05D003089 ORTHO05D003544 6.0e-241 837.8 746 65.0
Nn1g03865 Nelumbo nucifera HOM05D003089 ORTHO05D003544 1.3e-240 836.6 732 65.3
BcaB02g11071 Brassica carinata HOM05D003089 ORTHO05D003544 6.6e-240 834.3 729 66.7
Rhsim11G0174300 Rhododendron simsii HOM05D003089 ORTHO05D003544 2.5e-239 832.4 741 66.4
MELO3C012545.2 Cucumis melo HOM05D003089 ORTHO05D003544 3.6e-238 828.6 745 65.1
vmacro02128 Vaccinium macrocarpon HOM05D003089 ORTHO05D003544 8.9e-237 823.9 738 65.0
CsaV3_7G023410 Cucumis sativus L. HOM05D003089 ORTHO05D003544 1.2e-236 823.5 743 65.0
TWI75G1044 Tripterygium wilfordii HOM05D003089 ORTHO05D003544 2.0e-236 822.8 730 66.2
Gohir.A03G179500 Gossypium hirsutum HOM05D003089 ORTHO05D003544 3.4e-236 822.0 731 65.7
Lj9C368G4 Lonicera japonica HOM05D003089 ORTHO05D003544 3.4e-236 822.0 752 64.2
Gorai.005G228400 Gossypium raimondii HOM05D003089 ORTHO05D003544 4.4e-236 821.6 731 65.4
Lalb_Chr00c44g0412571 Lupinus albus HOM05D003089 ORTHO05D003544 4.4e-236 821.6 741 65.5
Lalb_Chr08g0246561 Lupinus albus HOM05D003089 ORTHO05D003544 4.4e-236 821.6 741 65.5
GSVIVG01031931001 Vitis vinifera HOM05D003089 ORTHO05D003544 5.8e-236 821.2 649 71.8
Glyma.04G013900 Glycine max HOM05D003089 ORTHO05D003544 1.3e-235 820.1 742 63.3
Gohir.D02G202895 Gossypium hirsutum HOM05D003089 ORTHO05D003544 1.3e-235 820.1 731 65.5
Lj1g0018032 Lotus japonicus HOM05D003089 ORTHO05D003544 1.1e-234 817.0 747 64.3
ClCG02G005170 Citrullus lanatus HOM05D003089 ORTHO05D003544 1.4e-234 816.6 745 64.7
Medtr3g116250 Medicago truncatula HOM05D003089 ORTHO05D003544 1.4e-234 816.6 744 64.0
Ca_15379_v3 Cicer arietinum L. HOM05D003089 ORTHO05D003544 2.4e-234 815.8 739 64.3
Atru.chr5.2984 Acer truncatum HOM05D003089 ORTHO05D003544 3.2e-234 815.5 737 65.9
Migut.B00253 Erythranthe guttata HOM05D003089 ORTHO05D003544 3.2e-234 815.5 734 64.3
Glyma.06G013800 Glycine max HOM05D003089 ORTHO05D003544 4.1e-234 815.1 745 62.7
Cc02_g17780 Coffea canephora HOM05D003089 ORTHO05D003544 7.1e-234 814.3 742 64.4
Sed0019364 Sechium edule HOM05D003089 ORTHO05D003544 9.2e-234 813.9 742 64.0
SGA_v2.0_scaffold58G20555 Striga asiatica HOM05D003089 ORTHO05D003544 9.2e-234 813.9 737 65.0
Sc18g0004600 Simmondsia chinensis HOM05D003089 ORTHO05D003544 3.0e-232 808.9 740 63.2
AUR62016712 Chenopodium quinoa HOM05D003089 ORTHO05D003544 1.2e-230 803.5 744 62.6
Phvul.009G009000 Phaseolus vulgaris HOM05D003089 ORTHO05D003544 2.8e-230 802.4 743 62.7
AUR62011350 Chenopodium quinoa HOM05D003089 ORTHO05D003544 3.6e-230 802.0 755 61.7
Lsat_1_v5_gn_9_109381 Lactuca sativa HOM05D003089 ORTHO05D003544 1.8e-229 799.7 732 63.3
arahy.Tifrunner.gnm1.ann1.U64SVT Arachis hypogaea HOM05D003089 ORTHO05D003544 7.6e-228 794.3 731 62.9
PSO478G0141 Papaver somniferum HOM05D003089 ORTHO05D003544 7.6e-228 794.3 729 62.8
Ah.01g019560 Amaranthus hybridus HOM05D003089 ORTHO05D003544 9.9e-228 793.9 747 62.4
MSTRG.20096 Avicennia marina HOM05D003089 ORTHO05D003544 1.7e-227 793.1 737 63.5
vmacro02129 Vaccinium macrocarpon HOM05D003089 ORTHO05D003544 1.7e-227 793.1 785 60.6
EL10Ac9g21746 Beta vulgaris HOM05D003089 ORTHO05D003544 6.4e-227 791.2 738 62.2
PSO161G0089 Papaver somniferum HOM05D003089 ORTHO05D003544 6.4e-227 791.2 729 62.6
Psat5g008280 Pisum sativum HOM05D003089 ORTHO05D003544 2.1e-225 786.2 776 60.3
TPR.G38232 Trifolium pratense HOM05D003089 ORTHO05D003544 2.7e-225 785.8 731 62.5
SalBow6G2407 Salvia bowleyana HOM05D003089 ORTHO05D003544 6.0e-225 784.6 730 62.5
SalBow6G4859 Salvia bowleyana HOM05D003089 ORTHO05D003544 6.0e-225 784.6 730 62.5
Lj5C199G5 Lonicera japonica HOM05D003089 ORTHO05D003544 3.3e-223 778.9 730 63.4
Aqoxy3G03189 Aquilegia oxysepala HOM05D003089 ORTHO05D003544 1.6e-222 776.5 747 60.8
arahy.Tifrunner.gnm1.ann1.AHB8GW Arachis hypogaea HOM05D003089 ORTHO05D003544 1.1e-221 773.9 775 59.5
HanXRQChr08g0216591 Helianthus annuus HOM05D003089 ORTHO05D003544 5.8e-220 768.1 731 62.4
DCAR_003639 Daucus carota HOM05D003089 ORTHO05D003544 7.6e-220 767.7 729 62.0
Hund06224 Selenicereus undatus HOM05D003089 ORTHO05D003544 8.4e-219 764.2 731 61.6
MBI03_g27663_MAGBIO Magnolia biondii HOM05D003089 ORTHO05D003544 5.4e-218 761.5 767 60.4
PGR042G2422 Punica granatum HOM05D003089 ORTHO05D003544 5.4e-218 761.5 732 62.0
ClCG11G004530 Citrullus lanatus HOM05D003089 ORTHO05D003544 5.1e-216 755.0 738 59.9
Hund00286 Selenicereus undatus HOM05D003089 ORTHO05D003544 5.1e-216 755.0 737 60.1
SGA_v2.0_scaffold32G13157 Striga asiatica HOM05D003089 ORTHO05D003544 2.5e-215 752.7 770 60.4
Nitab4.5_0000336g0120 Nicotiana tabacum HOM05D003089 ORTHO05D003544 1.6e-214 750.0 729 61.5
Oeu020770.2 Olea europaea HOM05D003089 ORTHO05D003544 6.2e-214 748.0 694 63.3
Nitab4.5_0000736g0060 Nicotiana tabacum HOM05D003089 ORTHO05D003544 3.4e-212 742.3 729 60.9
ATR0749G081 Amborella trichopoda HOM05D003089 ORTHO05D003544 1.1e-210 737.3 741 58.6
Peaxi162Scf00684g00421 Petunia axillaris HOM05D003089 ORTHO05D003544 1.6e-209 733.4 733 59.9
Sed0010503 Sechium edule HOM05D003089 ORTHO05D003544 6.9e-205 718.0 734 59.3
Sopen11g019550 Solanum pennellii HOM05D003089 ORTHO05D003544 7.6e-204 714.5 729 58.6
Solyc11g043130.2 Solanum lycopersicum HOM05D003089 ORTHO05D003544 2.2e-203 713.0 729 58.4
Sp1g37760 Schrenkiella parvula HOM05D003089 ORTHO05D003544 4.9e-203 711.8 663 61.7
Lsat_1_v5_gn_5_118040 Lactuca sativa HOM05D003089 ORTHO05D003544 1.2e-201 707.2 726 56.7
CAN.G566.47 Capsicum annuum HOM05D003089 ORTHO05D003544 1.6e-201 706.8 729 57.1
HanXRQChr10g0307291 Helianthus annuus HOM05D003089 ORTHO05D003544 3.9e-200 702.2 727 57.2
ECA234G4407 Erigeron canadensis HOM05D003089 ORTHO05D003544 2.0e-196 689.9 729 55.3
VMungo1309G0726 Vigna mungo HOM05D003089 ORTHO05D003544 3.5e-193 679.1 532 69.0
SEGI_36294 Sequoiadendron giganteum HOM05D003089 ORTHO05D003544 8.7e-192 674.5 754 54.2
ECA240G3266 Erigeron canadensis HOM05D003829 ORTHO05D003544 1.9e-191 673.3 738 55.6
SHI05424 Sapria himalayana HOM05D003089 ORTHO05D003544 9.7e-191 671.0 815 52.0
BraA06t23482Z Brassica rapa HOM05D003089 ORTHO05D003544 1.6e-185 653.7 575 63.1
A06p02740 Brassica napus HOM05D003089 ORTHO05D003544 2.3e-184 649.8 694 55.9
BcaB07g33546 Brassica carinata HOM05D003089 ORTHO05D003544 9.7e-183 644.4 693 56.7
BcaC08g43274 Brassica carinata HOM05D003089 ORTHO05D003544 9.7e-183 644.4 708 55.4
C06p06220 Brassica napus HOM05D003089 ORTHO05D003544 9.7e-183 644.4 708 55.4
BolC6t35733H Brassica oleracea HOM05D003089 ORTHO05D003544 9.7e-183 644.4 708 55.4
Aa31LG10G3360 Aethionema arabicum HOM05D003089 ORTHO05D003544 1.8e-181 640.2 739 53.2
Carub.0001s3993 Capsella rubella HOM05D003089 ORTHO05D003544 1.3e-179 634.0 728 52.1
Zm00001eb216400 Zea mays HOM05D003089 ORTHO05D003544 6.3e-174 615.1 593 57.8
CDE04G2374 Ceratophyllum demersum HOM05D003089 ORTHO05D003544 3.8e-171 605.9 582 61.3
Nitab4.5_0002814g0110 Nicotiana tabacum HOM05D003089 ORTHO05D003544 6.3e-166 588.6 729 50.9
Nitab4.5_0000982g0100 Nicotiana tabacum HOM05D003089 ORTHO05D003544 1.1e-165 587.8 727 51.6
CsaV3_2G014560 Cucumis sativus L. HOM05D003089 ORTHO05D003544 1.4e-165 587.4 632 56.2
Peaxi162Scf00242g00019 Petunia axillaris HOM05D003089 ORTHO05D003544 1.6e-164 583.9 729 50.5
unitig_61.g25998 Utricularia gibba HOM05D003089 ORTHO05D003544 3.5e-164 582.8 705 52.3
AL4G25950 Arabidopsis lyrata HOM05D003089 ORTHO05D003544 3.8e-163 579.3 578 58.8
CANSAT21G0290 Cannabis sativa HOM05D003089 ORTHO05D003544 2.5e-162 576.6 736 52.4
HPP92_026531 Vanilla planifolia HOM05D003089 ORTHO05D003544 4.2e-162 575.9 716 49.6
HPP92_026558 Vanilla planifolia HOM05D003089 ORTHO05D003544 2.0e-151 540.4 472 63.6
AagrBONN_evm.TU.Sc2ySwM_344.1888 Anthoceros agrestis HOM05D003089 ORTHO05D003544 8.3e-142 508.4 751 44.2
Mapoly0001s0228 Marchantia polymorpha HOM05D003089 ORTHO05D003544 1.8e-141 507.3 681 46.4
MELO3C020989.2 Cucumis melo HOM05D003089 ORTHO05D003544 1.1e-138 498.0 485 60.6
SMO116G0267 Selaginella moellendorffii HOM05D003089 ORTHO05D003544 6.8e-136 488.8 574 49.3
Eucgr.G00449 Eucalyptus grandis HOM05D003089 ORTHO05D003544 3.0e-131 473.4 400 67.0
Psat7g044200 Pisum sativum HOM05D003089 ORTHO05D003544 1.1e-128 464.9 347 73.2
Mapoly0001s0451 Marchantia polymorpha HOM05D003089 ORTHO05D003544 7.1e-125 452.2 748 40.6
AL307U10030 Arabidopsis lyrata HOM05D003089 ORTHO05D003544 1.2e-119 434.9 461 55.7
Pp3c22_1940 Physcomitrium patens HOM05D003089 ORTHO05D003544 1.1e-112 411.8 742 38.3
Pp3c5_19540 Physcomitrium patens HOM05D003089 ORTHO05D003544 7.6e-111 405.6 744 38.3
Thhalv10012090m.g Eutrema salsugineum HOM05D003089 ORTHO05D003544 7.3e-98 362.5 351 60.4
DCAR_000244 Daucus carota HOM05D003089 ORTHO05D003544 4.6e-92 343.2 373 57.1
CAN.G638.23 Capsicum annuum HOM05D003089 ORTHO05D003544 4.8e-89 333.2 330 59.1
Peaxi162Scf00242g00009 Petunia axillaris HOM05D003089 ORTHO05D003544 6.9e-72 276.2 561 39.4
Eucgr.L03231 Eucalyptus grandis HOM05D003089 ORTHO05D003544 5.1e-59 233.4 143 84.6
FAN27G0914 Fragaria x ananassa HOM05D003089 ORTHO05D003544 1.1e-56 225.7 209 58.9
CBR_g31025 Chara braunii HOM05D003089 ORTHO05D003544 4.7e-52 210.3 786 29.5
Hma1.2p1_0196F.1_g084730 Hydrangea macrophylla HOM05D003089 ORTHO05D003544 2.4e-24 118.2 76 81.6
Psat1g011800 Pisum sativum HOM05D006947 ORTHO05D008818 2.9e-17 94.7 58 86.2
CsaV3_2G014550 Cucumis sativus L. HOM05D003089 ORTHO05D003544 7.0e-16 90.1 51 92.2
CDE07G1820 Ceratophyllum demersum HOM05D003089 ORTHO05D003544 8.6e-14 83.2 215 40.0


User provided reference genes

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