Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc59.33 Carica papaya HOM05D000032 ORTHO05D024695 1.8e-89 332.8 199 100.0
Atru.chr4.1879 Acer truncatum HOM05D000032 ORTHO05D008248 4.6e-16 89.0 96 55.2
COL.COLO4_15998 Corchorus olitorius HOM05D000032 ORTHO05D008248 1.1e-14 84.3 101 53.5
Ciclev10004340m.g Citrus clementina HOM05D000032 ORTHO05D008248 1.5e-14 84.0 88 56.8
CARHR092100 Cardamine hirsuta HOM05D000032 ORTHO05D008248 1.9e-14 83.6 103 51.5
THA.LOC104802593 Tarenaya hassleriana HOM05D000032 ORTHO05D008248 1.9e-14 83.6 78 57.7
TWI73G0114 Tripterygium wilfordii HOM05D000032 ORTHO05D008248 1.9e-14 83.6 100 54.0
Ca_03626_v3 Cicer arietinum L. HOM05D000032 ORTHO05D008248 2.5e-14 83.2 119 43.7
A01p37420 Brassica napus HOM05D000032 ORTHO05D008248 4.3e-14 82.4 103 52.4
BraA01t03799Z Brassica rapa HOM05D000032 ORTHO05D008248 4.3e-14 82.4 103 52.4
BolC1t04705H Brassica oleracea HOM05D000032 ORTHO05D008248 9.5e-14 81.3 101 53.5
BcaB04g20873 Brassica carinata HOM05D000032 ORTHO05D008248 1.2e-13 80.9 118 46.6
vmacro00534 Vaccinium macrocarpon HOM05D000032 ORTHO05D008248 3.6e-13 79.3 95 54.7
Sp3g15080 Schrenkiella parvula HOM05D000032 ORTHO05D008248 4.7e-13 79.0 102 52.0
Medtr7g057250 Medicago truncatula HOM05D000032 ORTHO05D008248 6.2e-13 78.6 104 48.1
BcaC09g48642 Brassica carinata HOM05D000032 ORTHO05D008248 8.0e-13 78.2 97 53.6
Duzib151G1189 Durio zibethinus HOM05D000032 ORTHO05D008248 8.0e-13 78.2 132 46.2
Thecc.04G268600 Theobroma cacao HOM05D000032 ORTHO05D008248 8.0e-13 78.2 102 50.0
Gohir.D09G231300 Gossypium hirsutum HOM05D000032 ORTHO05D008248 1.4e-12 77.4 88 54.5
Manes.15G047300 Manihot esculenta HOM05D000032 ORTHO05D008248 1.8e-12 77.0 120 45.8
Gohir.A09G230200 Gossypium hirsutum HOM05D000032 ORTHO05D008248 2.3e-12 76.6 88 53.4
Gorai.006G254000 Gossypium raimondii HOM05D000032 ORTHO05D008248 2.3e-12 76.6 107 49.5
Carub.0003s1655 Capsella rubella HOM05D000032 ORTHO05D008248 3.1e-12 76.3 117 47.9
Cc03_g06800 Coffea canephora HOM05D000032 ORTHO05D008248 3.1e-12 76.3 119 47.1
Thhalv10020025m.g Eutrema salsugineum HOM05D000032 ORTHO05D008248 4.0e-12 75.9 93 55.9
Cfa014812 Carpinus fangiana HOM05D000032 ORTHO05D008248 1.2e-11 74.3 132 43.9
Glyma.07G074800 Glycine max HOM05D000032 ORTHO05D008248 2.0e-11 73.6 84 51.2
ClCG06G007360 Citrullus lanatus HOM05D000032 ORTHO05D024695 4.4e-11 72.4 94 48.9
PGR142G3130 Punica granatum HOM05D000032 ORTHO05D008248 4.4e-11 72.4 109 45.0
VMungo0331G1285 Vigna mungo HOM05D000032 ORTHO05D008248 4.4e-11 72.4 84 53.6
Lj3g0023133 Lotus japonicus HOM05D000032 ORTHO05D008248 5.8e-11 72.0 125 42.4
Phvul.010G094600 Phaseolus vulgaris HOM05D000032 ORTHO05D008248 5.8e-11 72.0 91 51.6
TPR.G9295 Trifolium pratense HOM05D000032 ORTHO05D008248 5.8e-11 72.0 96 45.8
AT3G16840 Arabidopsis thaliana HOM05D000032 ORTHO05D008248 9.8e-11 71.2 79 54.4
C01p47350 Brassica napus HOM05D000032 ORTHO05D008248 1.3e-10 70.9 101 48.5
CSS0044228 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D024695 1.3e-10 70.9 104 48.1
CARHR247950 Cardamine hirsuta HOM05D000032 ORTHO05D008248 1.3e-10 70.9 112 42.0
AL3G29800 Arabidopsis lyrata HOM05D000032 ORTHO05D008248 1.7e-10 70.5 108 46.3
CSS0035942 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D008248 1.7e-10 70.5 118 43.2
Hma1.2p1_0112F.1_g054935 Hydrangea macrophylla HOM05D000032 ORTHO05D008248 4.9e-10 68.9 120 42.5
CsaV3_2G012320 Cucumis sativus L. HOM05D000032 ORTHO05D008248 1.4e-09 67.4 128 39.1
Eucgr.H02888 Eucalyptus grandis HOM05D000032 ORTHO05D008248 1.4e-09 67.4 99 44.4
CSS0020734 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D024695 1.9e-09 67.0 76 53.9
Lj3C638G9 Lonicera japonica HOM05D000032 ORTHO05D008248 1.9e-09 67.0 87 57.5
Psat3g146960 Pisum sativum HOM05D000032 ORTHO05D008248 1.9e-09 67.0 112 42.0
Rhsim09G0043500 Rhododendron simsii HOM05D000032 ORTHO05D008248 1.9e-09 67.0 88 51.1
MELO3C023052.2 Cucumis melo HOM05D000032 ORTHO05D008248 2.4e-09 66.6 128 39.8
Dinv29787 Davidia involucrata HOM05D000032 ORTHO05D008248 2.4e-09 66.6 92 53.3
Potri.010G063600 Populus trichocarpa HOM05D000032 ORTHO05D008248 2.4e-09 66.6 83 50.6
CSS0031692 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D024695 3.2e-09 66.2 105 47.6
Sabra10G0043300 Salix brachista HOM05D000032 ORTHO05D008248 4.1e-09 65.9 78 53.8
Haze_11492 Corylus avellana HOM05D000032 ORTHO05D008248 7.0e-09 65.1 117 45.3
Oeu023144.1 Olea europaea HOM05D000032 ORTHO05D008248 9.2e-09 64.7 92 46.7
Prupe.5G037600 Prunus persica HOM05D000032 ORTHO05D008248 9.2e-09 64.7 76 46.1
DCAR_024298 Daucus carota HOM05D000032 ORTHO05D008248 1.6e-08 63.9 137 41.6
SalBow2G1692 Salvia bowleyana HOM05D000032 ORTHO05D008248 1.6e-08 63.9 109 43.1
CANSAT78G0248 Cannabis sativa HOM05D000032 ORTHO05D008248 2.7e-08 63.2 114 42.1
MD14G1084300 Malus domestica HOM05D000032 ORTHO05D008248 3.5e-08 62.8 124 40.3
SGA_v2.0_scaffold86G26859 Striga asiatica HOM05D000032 ORTHO05D008248 3.5e-08 62.8 116 39.7
FAN23G0160 Fragaria x ananassa HOM05D000032 ORTHO05D008248 4.6e-08 62.4 139 40.3
FAN28G1398 Fragaria x ananassa HOM05D000032 ORTHO05D008248 6.0e-08 62.0 139 40.3
Sed0024548 Sechium edule HOM05D000032 ORTHO05D008248 6.0e-08 62.0 121 38.8
Lalb_Chr10g0097291 Lupinus albus HOM05D000032 ORTHO05D008248 7.8e-08 61.6 120 40.0
Actinidia32966 Actinidia chinensis HOM05D000032 ORTHO05D008248 1.3e-07 60.8 53 62.3
Peaxi162Scf00125g01324 Petunia axillaris HOM05D000032 ORTHO05D008248 1.3e-07 60.8 117 44.4
RcHm_v2.0_Chr3g0492441 Rosa chinensis HOM05D000032 ORTHO05D008248 1.3e-07 60.8 132 40.2
Migut.G00589 Erythranthe guttata HOM05D000032 ORTHO05D008248 3.0e-07 59.7 99 43.4
Lsat_1_v5_gn_2_42041 Lactuca sativa HOM05D000032 ORTHO05D008248 3.0e-07 59.7 113 39.8
Sopen09g033680 Solanum pennellii HOM05D000032 ORTHO05D008248 3.0e-07 59.7 90 46.7
MD12G1094500 Malus domestica HOM05D000032 ORTHO05D008248 6.6e-07 58.5 119 42.9
Aa31LG8G3900 Aethionema arabicum HOM05D000032 ORTHO05D008248 8.6e-07 58.2 108 38.9
ECA232G1204 Erigeron canadensis HOM05D000032 ORTHO05D008248 8.6e-07 58.2 97 42.3
arahy.Tifrunner.gnm1.ann1.W310LH Arachis hypogaea HOM05D000032 ORTHO05D008248 1.1e-06 57.8 83 44.6
GSVIVG01027957001 Vitis vinifera HOM05D000032 ORTHO05D008248 1.1e-06 57.8 85 44.7
FAN19G1189 Fragaria x ananassa HOM05D000032 ORTHO05D008248 1.9e-06 57.0 104 42.3
Aqoxy5G00104 Aquilegia oxysepala HOM05D000032 ORTHO05D008248 2.5e-06 56.6 98 38.8
CiPaw.01G175600 Carya illinoinensis HOM05D000032 ORTHO05D008248 3.3e-06 56.2 93 43.0
Solyc09g090740.4 Solanum lycopersicum HOM05D000032 ORTHO05D008248 3.3e-06 56.2 92 44.6
arahy.Tifrunner.gnm1.ann1.15AJKM Arachis hypogaea HOM05D000032 ORTHO05D008248 4.3e-06 55.8 90 42.2
unitig_899.g14854 Utricularia gibba HOM05D000032 ORTHO05D008248 9.5e-06 54.7 74 45.9


User provided reference genes

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