Gene: AT3G16840

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G16840
  • Transcript Identifier AT3G16840.1
  • Gene Type Coding gene
  • Location Chr3 : 5738020-5743042 : negative

Gene Family Information

  • ID HOM05D000032
  • #Genes/#Species 5307/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G16840.1
  • uniprot Q93Y39

Descriptions

  • Description P-loop containing nucleoside triphosphate hydrolases superfamily protein
  • Computational description P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G60990.1); Has 60083 Blast hits to 51461 proteins in 3186 species: Archae - 589; Bacteria - 20345; Metazoa - 13239; Fungi - 7387; Plants - 3446; Viruses - 273; Other Eukaryotes - 14804 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process Solyc09g090740.4

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003724
IEA
Gene OntologyRNA helicase activity
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0004386
IEA
GOA Databasehelicase activity
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus
GO:0005730
IBA
Gene Ontologynucleolus1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR001650 Helicase, C-terminal
IPR011545 DEAD/DEAH box helicase domain
Mapman id Description
35.1 not assigned.annotated