Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc57.63 Carica papaya HOM05D000802 ORTHO05D004081 2.5e-56 221.9 111 100.0
THA.LOC104825917 Tarenaya hassleriana HOM05D000802 ORTHO05D004081 4.6e-34 147.9 97 71.1
Manes.01G237500 Manihot esculenta HOM05D000802 ORTHO05D004081 7.9e-34 147.1 97 72.2
TWI23G1116 Tripterygium wilfordii HOM05D000802 ORTHO05D004081 1.8e-33 146.0 100 70.0
AL1G11610 Arabidopsis lyrata HOM05D000802 ORTHO05D004081 3.9e-33 144.8 100 68.0
A10p01040 Brassica napus HOM05D000802 ORTHO05D004081 3.9e-33 144.8 100 69.0
BraA10t42382Z Brassica rapa HOM05D000802 ORTHO05D004081 3.9e-33 144.8 100 69.0
Carub.0001s0131 Capsella rubella HOM05D000802 ORTHO05D004081 5.1e-33 144.4 100 68.0
Ciclev10021391m.g Citrus clementina HOM05D000802 ORTHO05D004081 5.1e-33 144.4 105 64.8
TWI14G0499 Tripterygium wilfordii HOM05D000802 ORTHO05D004081 5.1e-33 144.4 100 69.0
AT1G02280 Arabidopsis thaliana HOM05D000802 ORTHO05D004081 1.1e-32 143.3 100 67.0
CARHR001580 Cardamine hirsuta HOM05D000802 ORTHO05D004081 1.5e-32 142.9 100 66.0
Thecc.01G329500 Theobroma cacao HOM05D000802 ORTHO05D004081 1.5e-32 142.9 100 66.0
Manes.05G006000 Manihot esculenta HOM05D000802 ORTHO05D004081 3.3e-32 141.7 97 68.0
Thhalv10008332m.g Eutrema salsugineum HOM05D000802 ORTHO05D004081 4.3e-32 141.4 100 66.0
BolC5t28888H Brassica oleracea HOM05D000802 ORTHO05D004081 5.6e-32 141.0 100 66.0
BolC8t52853H Brassica oleracea HOM05D000802 ORTHO05D004081 5.6e-32 141.0 109 64.2
BraA09t42222Z Brassica rapa HOM05D000802 ORTHO05D004081 5.6e-32 141.0 109 63.3
Aa31LG1G10220 Aethionema arabicum HOM05D000802 ORTHO05D004081 7.4e-32 140.6 99 66.7
BcaC07g42381 Brassica carinata HOM05D000802 ORTHO05D004081 1.3e-31 139.8 109 64.2
Gohir.A08G122600 Gossypium hirsutum HOM05D000802 ORTHO05D004081 3.7e-31 138.3 104 62.5
Gohir.D08G143800 Gossypium hirsutum HOM05D000802 ORTHO05D004081 3.7e-31 138.3 104 62.5
Gorai.N022100 Gossypium raimondii HOM05D000802 ORTHO05D004081 3.7e-31 138.3 104 62.5
Potri.002G183400 Populus trichocarpa HOM05D000802 ORTHO05D004081 3.7e-31 138.3 100 65.0
Sabra02G0132200 Salix brachista HOM05D000802 ORTHO05D004081 3.7e-31 138.3 97 64.9
BcaC05g24608 Brassica carinata HOM05D000802 ORTHO05D004081 6.2e-31 137.5 100 65.0
C05p01070 Brassica napus HOM05D000802 ORTHO05D004081 6.2e-31 137.5 100 65.0
Atru.chr5.812 Acer truncatum HOM05D000802 ORTHO05D004081 1.8e-30 136.0 94 63.8
Potri.014G109400 Populus trichocarpa HOM05D000802 ORTHO05D004081 1.8e-30 136.0 97 64.9
Sc08g0003370 Simmondsia chinensis HOM05D000802 ORTHO05D004081 1.8e-30 136.0 103 62.1
COL.COLO4_23080 Corchorus olitorius HOM05D000802 ORTHO05D004081 4.0e-30 134.8 93 66.7
Sabra14G0080700 Salix brachista HOM05D000802 ORTHO05D004081 4.0e-30 134.8 97 62.9
Haze_19432 Corylus avellana HOM05D000802 ORTHO05D004081 6.9e-30 134.0 101 65.3
QL07p018488 Quercus lobata HOM05D000802 ORTHO05D004081 6.9e-30 134.0 99 65.7
Duzib138G1614 Durio zibethinus HOM05D000802 ORTHO05D004081 9.0e-30 133.7 93 65.6
MBI19_g09933_MAGBIO Magnolia biondii HOM05D000802 ORTHO05D004081 9.0e-30 133.7 99 66.7
Prupe.3G078000 Prunus persica HOM05D000802 ORTHO05D004081 9.0e-30 133.7 98 65.3
TAR375G1110 Trochodendron aralioides HOM05D000802 ORTHO05D004081 9.0e-30 133.7 100 65.0
Duzib133G1225 Durio zibethinus HOM05D000802 ORTHO05D004081 1.2e-29 133.3 93 64.5
Hund00053 Selenicereus undatus HOM05D000802 ORTHO05D004081 1.5e-29 132.9 95 64.2
CiPaw.09G002500 Carya illinoinensis HOM05D000802 ORTHO05D004081 2.0e-29 132.5 101 64.4
Gohir.D11G107300 Gossypium hirsutum HOM05D000802 ORTHO05D004081 2.6e-29 132.1 100 59.0
Gorai.007G114900 Gossypium raimondii HOM05D000802 ORTHO05D004081 2.6e-29 132.1 100 59.0
GSVIVG01024469001 Vitis vinifera HOM05D000802 ORTHO05D004081 4.5e-29 131.3 94 64.9
Gohir.A11G102800 Gossypium hirsutum HOM05D000802 ORTHO05D004081 5.8e-29 131.0 100 60.0
C08p53390 Brassica napus HOM05D001221 ORTHO05D002870 7.6e-29 130.6 99 64.6
MD09G1219200 Malus domestica HOM05D000802 ORTHO05D004081 9.9e-29 130.2 98 63.3
Cc02_g04970 Coffea canephora HOM05D000802 ORTHO05D004081 1.3e-28 129.8 99 62.6
Cpa.g.sc33.189 Carica papaya HOM05D000802 ORTHO05D004081 1.7e-28 129.4 104 61.5
CSS0031314 Camellia sinensis var. sinensis HOM05D000802 ORTHO05D004081 2.9e-28 128.6 98 61.2
GSVIVG01011531001 Vitis vinifera HOM05D000802 ORTHO05D004081 2.9e-28 128.6 95 64.2
Dinv34517 Davidia involucrata HOM05D000802 ORTHO05D004081 3.8e-28 128.3 98 62.2
CAN.G1151.5 Capsicum annuum HOM05D000802 ORTHO05D004081 4.9e-28 127.9 96 62.5
Ciclev10011979m.g Citrus clementina HOM05D000802 ORTHO05D004081 4.9e-28 127.9 99 60.6
Nitab4.5_0000375g0300 Nicotiana tabacum HOM05D000802 ORTHO05D004081 4.9e-28 127.9 98 63.3
Oeu008097.3 Olea europaea HOM05D000802 ORTHO05D004081 4.9e-28 127.9 99 60.6
PGSC0003DMG400005258 Solanum tuberosum HOM05D000802 ORTHO05D004081 4.9e-28 127.9 96 62.5
Hma1.2p1_0264F.1_g105690 Hydrangea macrophylla HOM05D000802 ORTHO05D004081 6.4e-28 127.5 98 61.2
Solyc03g095220.3 Solanum lycopersicum HOM05D000802 ORTHO05D004081 6.4e-28 127.5 96 63.5
Sopen03g025230 Solanum pennellii HOM05D000802 ORTHO05D004081 6.4e-28 127.5 96 63.5
PGR142G3262 Punica granatum HOM05D000802 ORTHO05D004081 1.1e-27 126.7 96 63.5
PGSC0003DMG400011646 Solanum tuberosum HOM05D000802 ORTHO05D004081 1.1e-27 126.7 98 62.2
Actinidia01021 Actinidia chinensis HOM05D002347 ORTHO05D002969 1.4e-27 126.3 96 61.5
Nitab4.5_0002236g0120 Nicotiana tabacum HOM05D000802 ORTHO05D004081 1.4e-27 126.3 98 61.2
ECA248G3469 Erigeron canadensis HOM05D000802 ORTHO05D004081 1.9e-27 125.9 97 60.8
arahy.Tifrunner.gnm1.ann1.HMK4U0 Arachis hypogaea HOM05D000802 ORTHO05D004081 2.4e-27 125.6 99 58.6
vmacro09943 Vaccinium macrocarpon HOM05D000802 ORTHO05D004081 2.4e-27 125.6 100 56.0
Peaxi162Scf00073g02022 Petunia axillaris HOM05D000802 ORTHO05D004081 3.2e-27 125.2 98 62.2
TPR.G23670 Trifolium pratense HOM05D000802 ORTHO05D004081 4.2e-27 124.8 95 58.9
arahy.Tifrunner.gnm1.ann1.Q2PGQ6 Arachis hypogaea HOM05D000802 ORTHO05D004081 7.1e-27 124.0 99 58.6
ClCG10G000730 Citrullus lanatus HOM05D000802 ORTHO05D004081 7.1e-27 124.0 98 62.2
MD17G1202600 Malus domestica HOM05D000802 ORTHO05D004081 7.1e-27 124.0 98 60.2
Sed0021390 Sechium edule HOM05D000802 ORTHO05D004081 7.1e-27 124.0 98 62.2
Lsat_1_v5_gn_1_69920 Lactuca sativa HOM05D000802 ORTHO05D004081 9.3e-27 123.6 97 59.8
Rhsim09G0187600 Rhododendron simsii HOM05D000802 ORTHO05D004081 1.2e-26 123.2 99 56.6
Sed0028230 Sechium edule HOM05D000802 ORTHO05D004081 1.2e-26 123.2 97 63.9
Aqoxy5G04384 Aquilegia oxysepala HOM05D000802 ORTHO05D004081 1.6e-26 122.9 100 59.0
RcHm_v2.0_Chr2g0136921 Rosa chinensis HOM05D000802 ORTHO05D004081 2.1e-26 122.5 98 60.2
Sp6g37800 Schrenkiella parvula HOM05D000802 ORTHO05D004081 2.1e-26 122.5 99 56.6
CANSAT01G1655 Cannabis sativa HOM05D000802 ORTHO05D004081 2.7e-26 122.1 104 58.7
CAN.G598.14 Capsicum annuum HOM05D000802 ORTHO05D004081 3.5e-26 121.7 98 59.2
Eucgr.A02951 Eucalyptus grandis HOM05D000802 ORTHO05D004081 3.5e-26 121.7 99 62.6
AUR62010114 Chenopodium quinoa HOM05D000802 ORTHO05D004081 4.6e-26 121.3 95 60.0
CDE11G0943 Ceratophyllum demersum HOM05D000802 ORTHO05D004081 7.9e-26 120.6 96 61.5
MELO3C013766.2 Cucumis melo HOM05D000802 ORTHO05D004081 7.9e-26 120.6 96 63.5
HanXRQChr08g0223301 Helianthus annuus HOM05D000802 ORTHO05D004081 7.9e-26 120.6 96 57.3
EL10Ac9g21462 Beta vulgaris HOM05D000802 ORTHO05D004081 1.3e-25 119.8 98 56.1
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 1.3e-25 119.8 99 55.6
CARHR208260 Cardamine hirsuta HOM05D000802 ORTHO05D004081 1.3e-25 119.8 104 53.8
Dinv21876 Davidia involucrata HOM05D000802 ORTHO05D004081 1.3e-25 119.8 93 62.4
ECA233G4092 Erigeron canadensis HOM05D000802 ORTHO05D004081 1.3e-25 119.8 92 57.6
Migut.F00555 Erythranthe guttata HOM05D000802 ORTHO05D004081 1.3e-25 119.8 100 52.0
HanXRQChr05g0144211 Helianthus annuus HOM05D000802 ORTHO05D004081 1.3e-25 119.8 92 56.5
Lalb_Chr14g0363101 Lupinus albus HOM05D000802 ORTHO05D004081 1.3e-25 119.8 98 59.2
Peaxi162Scf00167g01122 Petunia axillaris HOM05D000802 ORTHO05D004081 1.3e-25 119.8 98 60.2
BcaC06g32215 Brassica carinata HOM05D000802 ORTHO05D004081 2.3e-25 119.0 99 54.5
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 2.3e-25 119.0 99 54.5
Rhsim03G0155200 Rhododendron simsii HOM05D000802 ORTHO05D004081 2.3e-25 119.0 99 54.5
Aqoxy1G02107 Aquilegia oxysepala HOM05D000802 ORTHO05D004081 3.0e-25 118.6 99 57.6
Aqoxy3G03249 Aquilegia oxysepala HOM05D000802 ORTHO05D004081 3.0e-25 118.6 99 57.6
CsaV3_3G000780 Cucumis sativus L. HOM05D000802 ORTHO05D004081 3.0e-25 118.6 96 61.5
FvH4_6g30520 Fragaria vesca HOM05D000802 ORTHO05D004081 3.0e-25 118.6 98 60.2
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 3.9e-25 118.2 99 54.5
Lsat_1_v5_gn_8_10781 Lactuca sativa HOM05D000802 ORTHO05D004081 3.9e-25 118.2 92 59.8
TPR.G1095 Trifolium pratense HOM05D000802 ORTHO05D004081 3.9e-25 118.2 94 61.7
HPP92_007960 Vanilla planifolia HOM05D000802 ORTHO05D004081 3.9e-25 118.2 97 57.7
FAN02G0388 Fragaria x ananassa HOM05D000802 ORTHO05D004081 6.7e-25 117.5 98 60.2
FAN09G2531 Fragaria x ananassa HOM05D000802 ORTHO05D004081 6.7e-25 117.5 98 60.2
vmacro06867 Vaccinium macrocarpon HOM05D000802 ORTHO05D004081 6.7e-25 117.5 99 53.5
Medtr3g090160 Medicago truncatula HOM05D000802 ORTHO05D004081 8.7e-25 117.1 97 52.6
PSO782G1492 Papaver somniferum HOM05D000802 ORTHO05D004081 8.7e-25 117.1 100 57.0
unitig_85.g27169 Utricularia gibba HOM05D000069 ORTHO05D004081 8.7e-25 117.1 92 62.0
C03p02390 Brassica napus HOM05D000802 ORTHO05D004081 1.1e-24 116.7 98 54.1
BolC3t12791H Brassica oleracea HOM05D000802 ORTHO05D004081 1.1e-24 116.7 98 54.1
Carub.0006s0394 Capsella rubella HOM05D000802 ORTHO05D004081 1.1e-24 116.7 98 55.1
Eucgr.K00109 Eucalyptus grandis HOM05D000802 ORTHO05D004081 1.1e-24 116.7 96 61.5
SalBow1G0855 Salvia bowleyana HOM05D000802 ORTHO05D004081 1.1e-24 116.7 97 56.7
Solyc05g052160.4 Solanum lycopersicum HOM05D000802 ORTHO05D004081 1.1e-24 116.7 96 55.2
Ca_08333_v3 Cicer arietinum L. HOM05D000802 ORTHO05D004081 1.5e-24 116.3 98 56.1
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 1.9e-24 115.9 99 53.5
Migut.F01219 Erythranthe guttata HOM05D000802 ORTHO05D004081 1.9e-24 115.9 96 54.2
Psat3g083600 Pisum sativum HOM05D000802 ORTHO05D004081 1.9e-24 115.9 98 56.1
Sopen05g030690 Solanum pennellii HOM05D000802 ORTHO05D004081 1.9e-24 115.9 96 55.2
arahy.Tifrunner.gnm1.ann1.J1F3AY Arachis hypogaea HOM05D000802 ORTHO05D004081 2.5e-24 115.5 96 56.2
arahy.Tifrunner.gnm1.ann1.SG9L4X Arachis hypogaea HOM05D000802 ORTHO05D004081 2.5e-24 115.5 96 56.2
A03p02040 Brassica napus HOM05D000802 ORTHO05D004081 2.5e-24 115.5 98 53.1
Glyma.03G003600 Glycine max HOM05D000802 ORTHO05D004081 2.5e-24 115.5 96 55.2
Glyma.19G122600 Glycine max HOM05D000802 ORTHO05D004081 2.5e-24 115.5 96 55.2
CiPaw.10G001500 Carya illinoinensis HOM05D000802 ORTHO05D004081 3.3e-24 115.2 95 62.1
HanXRQChr11g0335971 Helianthus annuus HOM05D000802 ORTHO05D004081 3.3e-24 115.2 96 56.2
Lj1C971G5 Lonicera japonica HOM05D000802 ORTHO05D004081 3.3e-24 115.2 95 58.9
PSO063G4774 Papaver somniferum HOM05D000802 ORTHO05D004081 3.3e-24 115.2 100 56.0
PSO384G0117 Papaver somniferum HOM05D000802 ORTHO05D004081 3.3e-24 115.2 100 56.0
MSTRG.151 Avicennia marina HOM05D000802 ORTHO05D004081 4.3e-24 114.8 96 58.3
Lj8C50G17 Lonicera japonica HOM05D002347 ORTHO05D004081 4.3e-24 114.8 93 61.3
Aa31LG11G5680 Aethionema arabicum HOM05D000802 ORTHO05D004081 5.6e-24 114.4 99 51.5
HanXRQChr11g0344251 Helianthus annuus HOM05D000802 ORTHO05D004081 5.6e-24 114.4 96 59.4
Medtr7g088050 Medicago truncatula HOM05D000802 ORTHO05D004081 5.6e-24 114.4 98 52.0
SGA_v2.0_scaffold60G20865 Striga asiatica HOM05D000802 ORTHO05D004081 5.6e-24 114.4 96 54.2
A09p68840 Brassica napus HOM05D001221 ORTHO05D002870 7.4e-24 114.0 86 64.0
AUR62013109 Chenopodium quinoa HOM05D000802 ORTHO05D004081 7.4e-24 114.0 94 57.4
Thhalv10014156m.g Eutrema salsugineum HOM05D000802 ORTHO05D004081 7.4e-24 114.0 97 52.6
BraA03t09573Z Brassica rapa HOM05D000802 ORTHO05D004081 9.6e-24 113.6 98 52.0
Phvul.001G101200 Phaseolus vulgaris HOM05D000802 ORTHO05D004081 9.6e-24 113.6 96 56.2
AL6G14710 Arabidopsis lyrata HOM05D000802 ORTHO05D004081 1.3e-23 113.2 98 52.0
AT5G05000 Arabidopsis thaliana HOM05D000802 ORTHO05D004081 1.6e-23 112.8 96 53.1
FAN05G2667 Fragaria x ananassa HOM05D000802 ORTHO05D004081 3.7e-23 111.7 98 58.2
Ca_08332_v3 Cicer arietinum L. HOM05D000802 ORTHO05D004081 4.8e-23 111.3 93 54.8
Lj1g0025966 Lotus japonicus HOM05D000802 ORTHO05D004081 4.8e-23 111.3 98 54.1
SEGI_01077 Sequoiadendron giganteum HOM05D000802 ORTHO05D004081 4.8e-23 111.3 89 58.4
MSTRG.8392 Avicennia marina HOM05D000802 ORTHO05D004081 6.2e-23 110.9 92 59.8
CDE11G0099 Ceratophyllum demersum HOM05D000802 ORTHO05D004081 6.2e-23 110.9 96 59.4
Lalb_Chr22g0358181 Lupinus albus HOM05D000802 ORTHO05D004081 6.2e-23 110.9 96 55.2
unitig_578.g16612 Utricularia gibba HOM05D002347 ORTHO05D004081 6.2e-23 110.9 92 57.6
Nitab4.5_0001130g0050 Nicotiana tabacum HOM05D000526 ORTHO05D004081 8.2e-23 110.5 95 54.7
VMungo1383G1718 Vigna mungo HOM05D000802 ORTHO05D004081 1.1e-22 110.2 96 54.2
ATR0705G100 Amborella trichopoda HOM05D000802 ORTHO05D004081 2.4e-22 109.0 97 54.6
Dinv21877 Davidia involucrata HOM05D000802 ORTHO05D004081 4.0e-22 108.2 76 63.2
CSS0045055 Camellia sinensis var. sinensis HOM05D000802 ORTHO05D004081 6.9e-22 107.5 92 57.6
Nitab4.5_0000103g0100 Nicotiana tabacum HOM05D000526 ORTHO05D004081 6.9e-22 107.5 74 66.2
THA.LOC104816490 Tarenaya hassleriana HOM05D000802 ORTHO05D004081 6.9e-22 107.5 74 64.9
SMO197G0055 Selaginella moellendorffii HOM05D000802 ORTHO05D004081 1.5e-21 106.3 98 52.0
Os03g0240500 Oryza sativa ssp. japonica HOM05D000802 ORTHO05D004081 2.0e-21 105.9 91 59.3
DCAR_009465 Daucus carota HOM05D000802 ORTHO05D004081 5.8e-21 104.4 97 55.7
Mapoly0056s0020 Marchantia polymorpha HOM05D000802 ORTHO05D004081 1.7e-20 102.8 98 51.0
Zm00001eb399060 Zea mays HOM05D000802 ORTHO05D004081 2.9e-20 102.1 91 58.2
Pp3c5_2650 Physcomitrium patens HOM05D000802 ORTHO05D004081 4.9e-20 101.3 98 54.1
SGA_v2.0_scaffold145G36018 Striga asiatica HOM05D000802 ORTHO05D004081 1.1e-19 100.1 74 60.8
Zm00001eb010200 Zea mays HOM05D000802 ORTHO05D004081 1.1e-19 100.1 91 57.1
FAN14G1564 Fragaria x ananassa HOM05D000802 ORTHO05D004081 1.9e-19 99.4 78 60.3
SHI20006 Sapria himalayana HOM05D004720 ORTHO05D005359 2.5e-19 99.0 74 59.5
Pp3c27_4730 Physcomitrium patens HOM05D000802 ORTHO05D004081 4.6e-18 94.7 90 53.3
AL3G10170 Arabidopsis lyrata HOM05D000802 ORTHO05D004081 2.3e-17 92.4 65 66.2
AL3G10180 Arabidopsis lyrata HOM05D000802 ORTHO05D004081 2.3e-17 92.4 65 66.2
AL3G10190 Arabidopsis lyrata HOM05D000802 ORTHO05D004081 2.3e-17 92.4 65 66.2
Actinidia31758 Actinidia chinensis HOM05D002347 ORTHO05D004081 2.9e-12 75.5 96 40.6
Hma1.2p1_0292F.1_g115850 Hydrangea macrophylla HOM05D000802 ORTHO05D004081 2.5e-11 72.4 53 58.5
CBR_g54201 Chara braunii HOM05D000802 ORTHO05D004081 5.5e-11 71.2 96 41.7
CBR_g51479 Chara braunii HOM05D000802 ORTHO05D004081 6.1e-10 67.8 94 38.3
CBR_g24117 Chara braunii HOM05D000802 ORTHO05D004081 6.7e-09 64.3 98 39.8
Gorai.004G148400 Gossypium raimondii HOM05D000802 ORTHO05D004081 8.8e-09 63.9 54 57.4


User provided reference genes

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