Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc56.111 Carica papaya HOM05D001476 ORTHO05D006149 0.0e+00 1686.0 868 100.0
Dinv35515 Davidia involucrata HOM05D001476 ORTHO05D006149 0.0e+00 1314.3 868 78.8
Thecc.05G022500 Theobroma cacao HOM05D001476 ORTHO05D006149 0.0e+00 1307.4 868 78.7
GSVIVG01034014001 Vitis vinifera HOM05D001476 ORTHO05D006149 0.0e+00 1301.6 872 77.9
Ciclev10011050m.g Citrus clementina HOM05D001476 ORTHO05D006149 0.0e+00 1300.0 869 79.1
Manes.09G101900 Manihot esculenta HOM05D001476 ORTHO05D006149 0.0e+00 1297.7 884 77.0
TWI77G0827 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1295.0 888 76.4
Actinidia13780 Actinidia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1294.6 874 77.5
Thhalv10020022m.g Eutrema salsugineum HOM05D001476 ORTHO05D006149 0.0e+00 1293.1 902 75.1
Gohir.D09G158600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1293.1 843 79.4
Gorai.006G180300 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1293.1 857 78.4
Potri.016G110800 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1291.9 874 77.5
THA.LOC104816221 Tarenaya hassleriana HOM05D001476 ORTHO05D006149 0.0e+00 1291.6 927 73.2
Gohir.A09G163100 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1290.0 868 77.9
Duzib128G0639 Durio zibethinus HOM05D001476 ORTHO05D006149 0.0e+00 1288.1 868 77.5
Hma1.2p1_0763F.1_g214610 Hydrangea macrophylla HOM05D001476 ORTHO05D006149 0.0e+00 1287.3 871 77.4
Potri.006G096100 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1286.2 875 77.1
TWI74G1595 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1283.5 875 75.7
TAR402G0001 Trochodendron aralioides HOM05D001476 ORTHO05D006149 0.0e+00 1281.9 876 76.4
Carub.0003s0826 Capsella rubella HOM05D001476 ORTHO05D006149 0.0e+00 1279.2 902 74.2
CSS0024803 Camellia sinensis var. sinensis HOM05D001476 ORTHO05D006149 0.0e+00 1276.5 874 76.7
CARHR083470 Cardamine hirsuta HOM05D001476 ORTHO05D006149 0.0e+00 1275.0 899 74.1
Atru.chr8.2151 Acer truncatum HOM05D001476 ORTHO05D006149 0.0e+00 1274.2 913 73.9
Sp3g07550 Schrenkiella parvula HOM05D001476 ORTHO05D006149 0.0e+00 1271.1 886 75.2
ClCG04G007260 Citrullus lanatus HOM05D001476 ORTHO05D006149 0.0e+00 1270.8 868 75.7
AT3G09090 Arabidopsis thaliana HOM05D001476 ORTHO05D006149 0.0e+00 1270.4 902 74.4
BcaC09g48009 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1266.1 897 74.0
Prupe.6G270500 Prunus persica HOM05D001476 ORTHO05D006149 0.0e+00 1263.8 878 75.1
MELO3C003223.2 Cucumis melo HOM05D001476 ORTHO05D006149 0.0e+00 1261.1 871 75.0
Gorai.012G111700 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1260.4 872 76.0
Haze_20947 Corylus avellana HOM05D001476 ORTHO05D006149 0.0e+00 1259.6 918 72.5
Nn2g13602 Nelumbo nucifera HOM05D001476 ORTHO05D006149 0.0e+00 1259.2 874 75.4
FvH4_6g12060 Fragaria vesca HOM05D001476 ORTHO05D006149 0.0e+00 1257.7 884 74.9
PGR031G2805 Punica granatum HOM05D001476 ORTHO05D006149 0.0e+00 1257.3 870 74.7
CsaV3_4G025980 Cucumis sativus L. HOM05D001476 ORTHO05D006149 0.0e+00 1254.6 869 74.3
Aqoxy1G00720 Aquilegia oxysepala HOM05D001476 ORTHO05D006149 0.0e+00 1251.1 867 74.5
BolC1t05473H Brassica oleracea HOM05D001476 ORTHO05D006149 0.0e+00 1250.3 911 72.8
Sed0003764 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1250.3 879 73.5
Gohir.D04G128600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1249.6 872 75.7
AL3G20170 Arabidopsis lyrata HOM05D001476 ORTHO05D006149 0.0e+00 1248.8 908 73.0
Eucgr.B02781 Eucalyptus grandis HOM05D001476 ORTHO05D006149 0.0e+00 1247.6 872 74.5
BcaC09g48054 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1245.3 902 72.4
Lj3g0014893 Lotus japonicus HOM05D001476 ORTHO05D006149 0.0e+00 1243.4 869 74.1
Ca_23816_v3 Cicer arietinum L. HOM05D001476 ORTHO05D006149 0.0e+00 1241.1 866 74.0
CiPaw.09G205700 Carya illinoinensis HOM05D001476 ORTHO05D006149 0.0e+00 1239.6 881 74.7
Migut.J00228 Erythranthe guttata HOM05D001476 ORTHO05D006149 0.0e+00 1228.0 875 73.3
Nitab4.5_0000008g0700 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1227.6 866 74.6
BraA01t04314Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1226.8 905 72.0
A05p39780 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1226.5 909 72.4
Nitab4.5_0011723g0020 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1220.3 866 74.0
Sc24g0002110 Simmondsia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1220.3 911 70.8
C05p58820 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1216.8 909 71.4
FAN05G2912 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1216.1 884 73.6
BraA05t22762Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1215.7 925 70.9
Glyma.03G076900 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1214.9 885 71.5
CANSAT35G0098 Cannabis sativa HOM05D001476 ORTHO05D006149 0.0e+00 1212.6 875 72.5
Glyma.01G111300 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1212.2 861 72.8
SGA_v2.0_scaffold22G09908 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1212.2 873 72.2
Medtr4g014960 Medicago truncatula HOM05D001476 ORTHO05D006149 0.0e+00 1211.8 876 72.4
Aa31LG3G1620 Aethionema arabicum HOM05D001476 ORTHO05D006149 0.0e+00 1209.5 911 71.1
FAN14G1008 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1209.5 899 72.4
Cc06_g01690 Coffea canephora HOM05D001476 ORTHO05D006149 0.0e+00 1209.1 871 70.6
FAN14G2619 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1208.4 899 72.3
Sed0007041 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1207.6 921 69.7
FAN09G2729 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1206.8 899 72.3
Rhsim05G0205700 Rhododendron simsii HOM05D001476 ORTHO05D006149 0.0e+00 1206.0 869 73.2
PSO832G0213 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1204.9 866 73.2
Nitab4.5_0004912g0100 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1204.5 873 72.5
FAN02G1993 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1204.1 884 73.1
SGA_v2.0_scaffold85G26765 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1203.7 868 73.2
PSO210G1670 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1202.2 867 72.7
ECA236G3430 Erigeron canadensis HOM05D001476 ORTHO05D006149 0.0e+00 1200.7 870 72.0
Psat0s2261g0240 Pisum sativum HOM05D001476 ORTHO05D006149 0.0e+00 1197.6 890 70.9
EL10Ac5g11563 Beta vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1196.0 933 69.2
VMungo0331G0441 Vigna mungo HOM05D001476 ORTHO05D006149 0.0e+00 1193.7 876 70.4
Sopen10g034520 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1193.3 868 72.2
TPR.G5272 Trifolium pratense HOM05D001476 ORTHO05D006149 0.0e+00 1189.1 871 71.9
SalBow5G4659 Salvia bowleyana HOM05D001476 ORTHO05D006149 0.0e+00 1188.3 938 67.7
CAN.G355.19 Capsicum annuum HOM05D001476 ORTHO05D006149 0.0e+00 1185.2 880 70.7
Peaxi162Scf00141g00813 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1185.2 830 74.2
DCAR_024038 Daucus carota HOM05D001476 ORTHO05D006149 0.0e+00 1184.1 874 72.1
Phvul.010G008300 Phaseolus vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1182.9 930 67.2
Oeu004614.2 Olea europaea HOM05D001476 ORTHO05D006149 0.0e+00 1181.0 879 71.2
HanXRQChr16g0507821 Helianthus annuus HOM05D001476 ORTHO05D006149 0.0e+00 1180.6 885 70.5
Solyc09g013130.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 0.0e+00 1180.6 899 70.0
MD04G1146700 Malus domestica HOM05D001476 ORTHO05D006149 0.0e+00 1177.2 873 72.1
HPP92_018041 Vanilla planifolia HOM05D001476 ORTHO05D006149 0.0e+00 1176.8 845 70.8
Peaxi162Scf00009g02022 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1173.3 871 71.6
ATR0618G171 Amborella trichopoda HOM05D001476 ORTHO05D006149 0.0e+00 1172.9 827 74.4
Sopen09g006990 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1171.8 899 69.7
PGSC0003DMG400011017 Solanum tuberosum HOM05D001476 ORTHO05D006149 0.0e+00 1169.8 872 70.8
MD12G1159900 Malus domestica HOM05D001476 ORTHO05D006149 0.0e+00 1167.1 896 70.3
BcaC05g29640 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1164.8 901 69.8
Nitab4.5_0000652g0160 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1162.9 832 73.2
Cfa017258 Carpinus fangiana HOM05D001476 ORTHO05D002681 0.0e+00 1149.0 839 72.8
Lalb_Chr07g0193321 Lupinus albus HOM05D001476 ORTHO05D006149 0.0e+00 1145.2 945 65.6
Duzib106G0695 Durio zibethinus HOM05D001476 ORTHO05D006149 0.0e+00 1140.9 868 69.4
Lj3A957T35 Lonicera japonica HOM05D001476 ORTHO05D006149 0.0e+00 1138.3 961 65.0
CDE04G3748 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 0.0e+00 1130.5 841 69.9
Lsat_1_v5_gn_8_99901 Lactuca sativa HOM05D001476 ORTHO05D006149 0.0e+00 1124.8 831 72.0
Rhsim05G0205800 Rhododendron simsii HOM05D001476 ORTHO05D006149 0.0e+00 1124.8 918 64.8
PGSC0003DMG400020350 Solanum tuberosum HOM05D001476 ORTHO05D006149 0.0e+00 1124.0 1002 61.6
arahy.Tifrunner.gnm1.ann1.5UT5JQ Arachis hypogaea HOM05D001476 ORTHO05D006149 0.0e+00 1120.9 897 68.2
arahy.Tifrunner.gnm1.ann1.VBIR99 Arachis hypogaea HOM05D001476 ORTHO05D006149 0.0e+00 1119.8 897 68.0
Zm00001eb063130 Zea mays HOM05D001476 ORTHO05D006149 0.0e+00 1117.8 841 68.4
Gohir.A04G088225 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1099.0 759 74.0
unitig_699.g19385 Utricularia gibba HOM05D001476 ORTHO05D006149 0.0e+00 1095.9 861 67.5
Os03g0825700 Oryza sativa ssp. japonica HOM05D001476 ORTHO05D006149 0.0e+00 1087.4 857 66.7
vmacro20235 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 0.0e+00 1084.7 817 69.4
CDE03G0023 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 3.9e-306 1054.7 842 64.6
Oeu044363.1 Olea europaea HOM05D001476 ORTHO05D006149 1.3e-296 1023.1 853 64.0
Ah.11g045320 Amaranthus hybridus HOM05D001476 ORTHO05D006149 1.3e-288 996.5 907 63.1
Solyc10g085060.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 1.6e-286 989.6 722 70.5
Sabra06G0073800 Salix brachista HOM05D001476 ORTHO05D002681 4.1e-279 964.9 879 62.3
Lsat_1_v5_gn_0_44361 Lactuca sativa HOM05D001476 ORTHO05D006149 8.5e-277 957.2 722 69.0
RcHm_v2.0_Chr3g0463911 Rosa chinensis HOM05D001476 ORTHO05D006149 7.2e-276 954.1 723 71.5
MSTRG.5600 Avicennia marina HOM05D001476 ORTHO05D006149 7.5e-273 944.1 698 71.5
Sabra16G0107400 Salix brachista HOM05D001476 ORTHO05D006149 2.4e-271 939.1 961 57.5
CAN.G1297.2 Capsicum annuum HOM05D001476 ORTHO05D006149 5.9e-270 934.5 594 78.5
Pp3c20_710 Physcomitrium patens HOM05D001476 ORTHO05D006149 6.1e-267 924.5 861 56.6
TAR636G2437 Trochodendron aralioides HOM05D001476 ORTHO05D006149 2.4e-263 912.5 505 86.1
Mapoly0103s0063 Marchantia polymorpha HOM05D001476 ORTHO05D006149 8.0e-259 897.5 898 55.2
SMO145G0033 Selaginella moellendorffii HOM05D001476 ORTHO05D006149 3.2e-247 859.0 852 54.8
SEGI_02222 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 1.5e-244 850.1 692 66.0
AagrBONN_evm.TU.Sc2ySwM_369.563 Anthoceros agrestis HOM05D001476 ORTHO05D006149 3.7e-187 659.4 644 57.5
SHI12782 Sapria himalayana HOM05D001476 ORTHO05D006149 1.4e-183 647.5 540 67.2
AUR62043525 Chenopodium quinoa HOM05D001476 ORTHO05D006149 1.5e-175 620.9 451 68.5
TPR.G6686 Trifolium pratense HOM05D001476 ORTHO05D006149 2.5e-175 620.2 371 79.0
COL.COLO4_14599 Corchorus olitorius HOM05D001476 ORTHO05D006149 2.1e-174 617.1 352 84.4
AUR62044509 Chenopodium quinoa HOM05D001476 ORTHO05D006149 2.2e-168 597.0 341 81.8
AUR62043103 Chenopodium quinoa HOM05D001476 ORTHO05D006149 2.6e-164 583.6 361 77.0
AUR62043102 Chenopodium quinoa HOM05D001476 ORTHO05D006149 5.5e-159 565.8 549 63.0
vmacro17486 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 1.6e-158 564.3 466 65.7
CBR_g8542 Chara braunii HOM05D001476 ORTHO05D006149 2.2e-139 500.7 699 44.2
MCO10G178 Micromonas commoda HOM05D001476 ORTHO05D006149 1.2e-137 495.0 850 38.7
Cre04.g214097 Chlamydomonas reinhardtii HOM05D001476 ORTHO05D006149 5.2e-133 479.6 982 35.5
SHI12784 Sapria himalayana HOM05D001476 ORTHO05D006149 2.5e-127 460.7 305 73.4
COL.COLO4_14600 Corchorus olitorius HOM05D001476 ORTHO05D006149 1.2e-116 425.2 509 52.7
AUR62043524 Chenopodium quinoa HOM05D001476 ORTHO05D006149 1.3e-115 421.8 461 59.7
BcaC09g47968 Brassica carinata HOM05D001476 ORTHO05D006149 2.2e-115 421.0 297 71.7
Actinidia29132 Actinidia chinensis HOM05D001476 ORTHO05D006149 9.0e-101 372.5 614 41.9
PRCOL_00002974 Prasinoderma coloniale HOM05D001476 ORTHO05D006149 1.6e-97 361.7 1029 30.9
TAR636G0462 Trochodendron aralioides HOM05D001476 ORTHO05D006149 2.0e-84 318.2 355 60.0
RcHm_v2.0_Chr3g0463901 Rosa chinensis HOM05D001476 ORTHO05D006149 3.8e-75 287.3 165 81.8
Dinv37085 Davidia involucrata HOM05D001476 ORTHO05D002681 1.7e-54 218.8 327 42.5
BolC5t34534H Brassica oleracea HOM05D001476 ORTHO05D002681 4.4e-47 194.1 151 76.8
Hund31411 Selenicereus undatus HOM05D001476 ORTHO05D006149 1.7e-43 182.2 104 82.7
vmacro17485 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 9.8e-39 166.4 107 76.6
SEGI_09667 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 6.6e-35 153.7 107 66.4
MSTRG.19033 Avicennia marina HOM05D001476 ORTHO05D031643 6.4e-30 137.1 90 71.1
FAN23G1187 Fragaria x ananassa HOM05D001476 ORTHO05D031643 1.1e-21 109.8 86 68.6
Rhsim09G0090000 Rhododendron simsii HOM05D001476 ORTHO05D034934 1.9e-21 109.0 77 70.1
TAR629G0215 Trochodendron aralioides HOM05D000393 ORTHO05D000275 2.4e-21 108.6 94 64.9
TAR381G0471 Trochodendron aralioides HOM05D000141 ORTHO05D000780 3.1e-16 91.7 94 63.8
TAR626G1231 Trochodendron aralioides HOM05D000393 ORTHO05D000275 5.8e-15 87.4 57 73.7
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 7.5e-15 87.0 94 54.3
TAR369G0367 Trochodendron aralioides HOM05D001309 ORTHO05D000385 3.7e-14 84.7 45 86.7
FAN19G0609 Fragaria x ananassa HOM05D014108 ORTHO05D015280 1.9e-13 82.4 94 53.2
TAR636G0366 Trochodendron aralioides HOM05D001476 ORTHO05D006149 2.3e-11 75.5 53 77.4
GSVIVG01021923001 Vitis vinifera HOM05D001476 ORTHO05D006149 2.3e-11 75.5 66 54.5
Rhsim05G0112000 Rhododendron simsii HOM05D047264 ORTHO05D021376 7.3e-10 70.5 58 60.3
MELO3C011527.2 Cucumis melo HOM05D001476 ORTHO05D034934 1.1e-08 66.6 40 70.0
TWI53G1805 Tripterygium wilfordii HOM05D001476 ORTHO05D031643 2.4e-08 65.5 52 63.5
Rhsim06G0121600 Rhododendron simsii HOM05D001476 ORTHO05D034934 2.6e-07 62.0 47 68.1


User provided reference genes

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