Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc56.104 Carica papaya HOM05D005750 ORTHO05D007126 4.1e-156 554.7 277 100.0
Duzib093G0788 Durio zibethinus HOM05D005750 ORTHO05D007126 2.0e-126 456.1 284 81.7
Duzib128G1738 Durio zibethinus HOM05D005750 ORTHO05D007126 2.6e-126 455.7 283 82.0
Gohir.A01G224900 Gossypium hirsutum HOM05D005750 ORTHO05D007126 2.9e-125 452.2 285 81.8
Gorai.002G260600 Gossypium raimondii HOM05D005750 ORTHO05D007126 5.4e-124 448.0 275 82.9
Gohir.D01G214500 Gossypium hirsutum HOM05D005750 ORTHO05D007126 1.6e-123 446.4 275 82.9
COL.COLO4_14617 Corchorus olitorius HOM05D005750 ORTHO05D007126 2.1e-120 436.0 309 75.4
Thecc.05G023200 Theobroma cacao HOM05D005750 ORTHO05D007126 2.8e-120 435.6 283 80.2
Prupe.6G269800 Prunus persica HOM05D005750 ORTHO05D007126 7.5e-118 427.6 260 83.5
Lalb_Chr07g0193351 Lupinus albus HOM05D005750 ORTHO05D007126 3.7e-117 425.2 278 78.8
CiPaw.09G205200 Carya illinoinensis HOM05D005750 ORTHO05D007126 1.1e-116 423.7 282 77.7
Manes.09G101500 Manihot esculenta HOM05D005750 ORTHO05D007126 1.4e-116 423.3 277 77.3
arahy.Tifrunner.gnm1.ann1.CU0EG8 Arachis hypogaea HOM05D005750 ORTHO05D007126 1.9e-116 422.9 280 78.6
Ciclev10012396m.g Citrus clementina HOM05D005750 ORTHO05D007126 1.9e-116 422.9 286 76.6
MD04G1146200 Malus domestica HOM05D005750 ORTHO05D007126 2.4e-116 422.5 260 82.7
ClCG10G021760 Citrullus lanatus HOM05D005750 ORTHO05D007126 5.4e-116 421.4 263 81.7
FvH4_6g12170 Fragaria vesca HOM05D005750 ORTHO05D007126 5.4e-116 421.4 286 77.3
FAN09G4178 Fragaria x ananassa HOM05D005750 ORTHO05D007126 5.4e-116 421.4 286 77.3
FAN02G3889 Fragaria x ananassa HOM05D005750 ORTHO05D007126 9.2e-116 420.6 286 76.9
FAN14G0046 Fragaria x ananassa HOM05D005750 ORTHO05D007126 1.6e-115 419.9 285 77.2
FAN14G1750 Fragaria x ananassa HOM05D005750 ORTHO05D007126 1.6e-115 419.9 285 77.2
Potri.016G110300 Populus trichocarpa HOM05D005750 ORTHO05D007126 2.7e-115 419.1 273 76.2
RcHm_v2.0_Chr3g0463971 Rosa chinensis HOM05D005750 ORTHO05D007126 2.7e-115 419.1 263 83.3
CsaV3_3G034210 Cucumis sativus L. HOM05D005750 ORTHO05D007126 3.5e-115 418.7 263 81.0
MELO3C009196.2 Cucumis melo HOM05D005750 ORTHO05D007126 7.8e-115 417.5 263 80.6
VMungo0331G1407 Vigna mungo HOM05D005750 ORTHO05D007126 3.9e-114 415.2 278 78.1
Glyma.01G110900 Glycine max HOM05D005750 ORTHO05D007126 5.0e-114 414.8 278 78.1
MD12G1159400 Malus domestica HOM05D005750 ORTHO05D007126 5.0e-114 414.8 265 80.4
Phvul.010G008000 Phaseolus vulgaris HOM05D005750 ORTHO05D007126 6.6e-114 414.5 279 78.1
arahy.Tifrunner.gnm1.ann1.2Q187C Arachis hypogaea HOM05D005750 ORTHO05D007126 8.6e-114 414.1 277 77.6
Lj3g0021719 Lotus japonicus HOM05D005750 ORTHO05D007126 8.6e-114 414.1 279 77.8
QL07p036167 Quercus lobata HOM05D005750 ORTHO05D007126 8.6e-114 414.1 276 76.8
TWI74G1070 Tripterygium wilfordii HOM05D005750 ORTHO05D007126 1.5e-113 413.3 273 77.3
CANSAT35G0049 Cannabis sativa HOM05D005750 ORTHO05D007126 1.9e-113 412.9 279 75.6
Sed0027096 Sechium edule HOM05D005750 ORTHO05D007126 7.3e-113 411.0 278 77.3
Dinv35517 Davidia involucrata HOM05D005750 ORTHO05D007126 1.6e-112 409.8 282 74.1
Dinv37089 Davidia involucrata HOM05D005750 ORTHO05D007126 2.1e-112 409.5 277 75.8
TWI53G0977 Tripterygium wilfordii HOM05D005750 ORTHO05D007126 4.7e-112 408.3 278 77.0
TPR.G5219 Trifolium pratense HOM05D005750 ORTHO05D007126 5.2e-111 404.8 278 77.3
Psat7g247000 Pisum sativum HOM05D005750 ORTHO05D007126 2.6e-110 402.5 280 76.1
Atru.chr8.2137 Acer truncatum HOM05D005750 ORTHO05D007126 5.8e-110 401.4 257 80.9
THA.LOC104823389 Tarenaya hassleriana HOM05D005750 ORTHO05D007126 5.8e-110 401.4 281 72.2
Actinidia13787 Actinidia chinensis HOM05D005750 ORTHO05D007126 7.5e-110 401.0 255 78.4
Glyma.03G076500 Glycine max HOM05D005750 ORTHO05D007126 1.7e-109 399.8 292 73.6
DCAR_028833 Daucus carota HOM05D005750 ORTHO05D007126 1.1e-108 397.1 280 74.3
GSVIVG01034019001 Vitis vinifera HOM05D005750 ORTHO05D007126 1.1e-108 397.1 276 72.8
Aqoxy1G00732 Aquilegia oxysepala HOM05D005750 ORTHO05D007126 1.4e-108 396.7 263 75.3
vmacro20231 Vaccinium macrocarpon HOM05D005750 ORTHO05D007126 7.1e-108 394.4 260 77.3
Lj2A78G34 Lonicera japonica HOM05D005750 ORTHO05D007126 1.6e-107 393.3 279 73.5
Nitab4.5_0000119g0240 Nicotiana tabacum HOM05D005750 ORTHO05D007126 2.1e-107 392.9 282 72.3
CAN.G351.8 Capsicum annuum HOM05D005750 ORTHO05D007126 2.7e-107 392.5 284 70.8
Aa31sc171G20 Aethionema arabicum HOM05D005750 ORTHO05D007126 4.6e-107 391.7 282 72.0
Medtr4g014710 Medicago truncatula HOM05D005750 ORTHO05D007126 1.0e-106 390.6 280 75.4
Sabra06G0073600 Salix brachista HOM05D005750 ORTHO05D007126 1.3e-106 390.2 314 65.0
Hund15288 Selenicereus undatus HOM05D005750 ORTHO05D007126 1.7e-106 389.8 272 73.9
Cc06_g01740 Coffea canephora HOM05D005750 ORTHO05D007126 2.3e-106 389.4 282 71.3
Eucgr.B02764 Eucalyptus grandis HOM05D005750 ORTHO05D007126 6.6e-106 387.9 261 75.9
PGR031G0365 Punica granatum HOM05D005750 ORTHO05D007126 1.9e-105 386.3 261 73.6
Sc01g0006740 Simmondsia chinensis HOM05D005750 ORTHO05D007126 1.9e-105 386.3 264 73.5
Ah.11g045300 Amaranthus hybridus HOM05D005750 ORTHO05D007126 2.5e-105 386.0 272 73.2
MBI14_g32934_MAGBIO Magnolia biondii HOM05D005750 ORTHO05D007126 4.3e-105 385.2 259 75.3
Carub.0005s2072 Capsella rubella HOM05D005750 ORTHO05D007126 9.5e-105 384.0 283 71.0
TAR636G2178 Trochodendron aralioides HOM05D005750 ORTHO05D007126 1.2e-104 383.6 271 72.7
AL5G35150 Arabidopsis lyrata HOM05D005750 ORTHO05D007126 1.6e-104 383.3 286 70.6
CSS0046643 Camellia sinensis var. sinensis HOM05D005750 ORTHO05D007126 1.6e-104 383.3 261 74.7
Thhalv10010608m.g Eutrema salsugineum HOM05D005750 ORTHO05D007126 1.6e-104 383.3 285 71.2
BcaC02g09095 Brassica carinata HOM05D005750 ORTHO05D007126 2.1e-104 382.9 282 70.9
C04p38380 Brassica napus HOM05D005750 ORTHO05D007126 2.1e-104 382.9 282 70.6
AT3G54130 Arabidopsis thaliana HOM05D005750 ORTHO05D007126 4.7e-104 381.7 283 70.7
BolC4t25415H Brassica oleracea HOM05D005750 ORTHO05D007126 4.7e-104 381.7 287 69.3
EL10Ac5g11550 Beta vulgaris HOM05D005750 ORTHO05D007126 1.8e-103 379.8 275 72.4
BcaB02g08472 Brassica carinata HOM05D005750 ORTHO05D007126 1.8e-103 379.8 286 69.9
TAR623G1708 Trochodendron aralioides HOM05D005750 ORTHO05D007126 2.3e-103 379.4 277 69.7
A09p47130 Brassica napus HOM05D005750 ORTHO05D007126 4.0e-103 378.6 284 68.3
BraA09t40175Z Brassica rapa HOM05D005750 ORTHO05D007126 4.0e-103 378.6 284 68.3
Peaxi162Scf00014g00091 Petunia axillaris HOM05D005750 ORTHO05D007126 4.0e-103 378.6 285 69.8
CARHR164010 Cardamine hirsuta HOM05D005750 ORTHO05D007126 5.2e-103 378.3 286 69.9
Sp5g08260 Schrenkiella parvula HOM05D005750 ORTHO05D007126 5.2e-103 378.3 283 70.0
Sopen10g036170 Solanum pennellii HOM05D005750 ORTHO05D007126 8.9e-103 377.5 284 69.0
Sabra16G0106800 Salix brachista HOM05D005750 ORTHO05D007126 2.0e-102 376.3 274 72.6
C08p29390 Brassica napus HOM05D005750 ORTHO05D007126 3.4e-102 375.6 287 67.9
BolC8t50540H Brassica oleracea HOM05D005750 ORTHO05D007126 3.4e-102 375.6 287 67.9
MSTRG.26795 Avicennia marina HOM05D005750 ORTHO05D007126 7.6e-102 374.4 273 71.4
AUR62042943 Chenopodium quinoa HOM05D005750 ORTHO05D007126 7.6e-102 374.4 272 74.3
A04p05670 Brassica napus HOM05D005750 ORTHO05D007126 1.7e-101 373.2 288 67.4
Lsat_1_v5_gn_8_99481 Lactuca sativa HOM05D005750 ORTHO05D007126 1.4e-100 370.2 211 83.9
Haze_20940 Corylus avellana HOM05D005750 ORTHO05D007126 2.4e-100 369.4 257 73.9
BraA04t16263Z Brassica rapa HOM05D005750 ORTHO05D007126 3.2e-100 369.0 288 66.7
PSO384G4196 Papaver somniferum HOM05D005750 ORTHO05D007126 7.1e-100 367.9 257 73.2
Potri.006G095700 Populus trichocarpa HOM05D005750 ORTHO05D007126 1.2e-99 367.1 230 78.7
Migut.J00232 Erythranthe guttata HOM05D005750 ORTHO05D007126 1.6e-99 366.7 243 76.1
Oeu004613.2 Olea europaea HOM05D005750 ORTHO05D007126 1.6e-99 366.7 315 64.1
PSO339G6575 Papaver somniferum HOM05D005750 ORTHO05D007126 1.3e-98 363.6 257 72.8
Rhsim05G0204700 Rhododendron simsii HOM05D005750 ORTHO05D007126 1.1e-97 360.5 289 66.4
unitig_46.g18409 Utricularia gibba HOM05D005750 ORTHO05D007126 1.1e-97 360.5 273 70.0
HanXRQChr16g0510541 Helianthus annuus HOM05D005750 ORTHO05D007126 1.5e-97 360.1 253 71.5
CDE02G4717 Ceratophyllum demersum HOM05D005750 ORTHO05D007126 5.6e-97 358.2 275 68.0
Hma1.2p1_0763F.1_g214560 Hydrangea macrophylla HOM05D005750 ORTHO05D007126 7.3e-97 357.8 278 66.5
Sed0026182 Sechium edule HOM05D005750 ORTHO05D007126 7.3e-97 357.8 256 71.9
BcaB01g00216 Brassica carinata HOM05D005750 ORTHO05D007126 6.2e-96 354.8 208 81.2
Zm00001eb367490 Zea mays HOM05D005750 ORTHO05D007126 4.4e-94 348.6 285 61.8
Os01g0851400 Oryza sativa ssp. japonica HOM05D005750 ORTHO05D007126 6.4e-93 344.7 275 65.5
Zm00001eb147810 Zea mays HOM05D005750 ORTHO05D007126 1.6e-91 340.1 281 63.0
SGA_v2.0_scaffold240G44116 Striga asiatica HOM05D005750 ORTHO05D007126 3.5e-91 339.0 268 66.0
Gohir.D04G128250 Gossypium hirsutum HOM05D005750 ORTHO05D007126 1.3e-88 330.5 263 66.5
SEGI_00199 Sequoiadendron giganteum HOM05D005750 ORTHO05D007126 1.4e-87 327.0 257 63.0
Gorai.012G111300 Gossypium raimondii HOM05D005750 ORTHO05D007126 1.3e-85 320.5 263 65.0
CiPaw.10G154000 Carya illinoinensis HOM05D005750 ORTHO05D007126 9.3e-84 314.3 267 64.8
Actinidia29137 Actinidia chinensis HOM05D005750 ORTHO05D007126 5.1e-82 308.5 234 69.7
TPR.G5190 Trifolium pratense HOM05D005750 ORTHO05D007126 6.4e-77 291.6 231 64.1
Ca_23809_v3 Cicer arietinum L. HOM05D005750 ORTHO05D007126 3.2e-76 289.3 189 77.8
HPP92_018186 Vanilla planifolia HOM05D005750 ORTHO05D007126 3.0e-74 282.7 279 55.9
ECA236G1744 Erigeron canadensis HOM05D005750 ORTHO05D007126 3.9e-74 282.3 183 74.9
Nn2g13588 Nelumbo nucifera HOM05D005750 ORTHO05D007126 5.8e-70 268.5 179 74.3
SGA_v2.0_scaffold85G26769 Striga asiatica HOM05D005750 ORTHO05D007126 5.8e-70 268.5 201 67.7
PGSC0003DMG400019130 Solanum tuberosum HOM05D005750 ORTHO05D007126 1.4e-68 263.8 197 69.5
AUR62025787 Chenopodium quinoa HOM05D005750 ORTHO05D007126 5.1e-66 255.4 185 71.4
Solyc10g086770.3 Solanum lycopersicum HOM05D005750 ORTHO05D007126 1.3e-64 250.8 197 66.5
CBR_g865 Chara braunii HOM05D005750 ORTHO05D007126 8.5e-61 238.0 278 46.4
AagrBONN_evm.TU.Sc2ySwM_344.3267 Anthoceros agrestis HOM05D005750 ORTHO05D007126 1.4e-60 237.3 202 58.4
Pp3c7_8520 Physcomitrium patens HOM05D005750 ORTHO05D007126 2.5e-60 236.5 247 49.0
SMO203G0145 Selaginella moellendorffii HOM05D005750 ORTHO05D007126 1.1e-49 201.1 170 58.2
Nitab4.5_0006439g0020 Nicotiana tabacum HOM05D005750 ORTHO05D007126 5.7e-49 198.7 282 46.8
Cre11.g475450 Chlamydomonas reinhardtii HOM05D005750 ORTHO05D007126 1.6e-43 180.6 199 46.7
TAR636G1840 Trochodendron aralioides HOM05D005750 ORTHO05D007126 3.9e-42 176.0 233 47.2
MCO10G202 Micromonas commoda HOM05D005750 ORTHO05D007126 1.9e-36 157.1 280 35.0
PRCOL_00002333 Prasinoderma coloniale HOM05D005750 ORTHO05D007126 1.7e-29 134.0 277 32.9
TAR402G0002 Trochodendron aralioides HOM05D005750 ORTHO05D007126 1.5e-28 131.0 87 77.0
Haze_26299 Corylus avellana HOM05D005750 ORTHO05D007126 2.5e-28 130.2 173 39.9
Ca_23812_v3 Cicer arietinum L. HOM05D005750 ORTHO05D007126 5.2e-26 122.5 85 77.6
ATR0618G451 Amborella trichopoda HOM05D005750 ORTHO05D007126 7.7e-22 108.6 57 87.7
Nn2g11345 Nelumbo nucifera HOM05D005750 ORTHO05D007126 1.5e-20 104.4 54 90.7
A04p05660 Brassica napus HOM05D005750 ORTHO05D007126 6.8e-18 95.5 52 84.6
arahy.Tifrunner.gnm1.ann1.CQ7B2G Arachis hypogaea HOM05D005325 ORTHO05D008457 7.5e-09 65.5 185 29.7
arahy.Tifrunner.gnm1.ann1.VY3BKH Arachis hypogaea HOM05D005325 ORTHO05D008457 7.5e-09 65.5 186 30.1
Glyma.14G192300 Glycine max HOM05D005325 ORTHO05D008457 7.5e-09 65.5 186 30.1
Cpa.g.sc112.50 Carica papaya HOM05D005325 ORTHO05D008457 1.3e-08 64.7 191 30.9
Os03g0265200 Oryza sativa ssp. japonica HOM05D005325 ORTHO05D008457 2.2e-08 63.9 183 27.9
GSVIVG01024786001 Vitis vinifera HOM05D005325 ORTHO05D008457 3.7e-08 63.2 192 29.2
VMungo0647G2564 Vigna mungo HOM05D005325 ORTHO05D008457 6.4e-08 62.4 183 27.3
ATR0618G365 Amborella trichopoda HOM05D005325 ORTHO05D008457 1.1e-07 61.6 162 31.5
Glyma.02G225500 Glycine max HOM05D005325 ORTHO05D008457 1.1e-07 61.6 186 29.0
Nitab4.5_0000408g0140 Nicotiana tabacum HOM05D005325 ORTHO05D008457 1.1e-07 61.6 188 27.1
PGR119G0476 Punica granatum HOM05D005325 ORTHO05D008457 1.4e-07 61.2 191 29.3
CSS0007520 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 2.4e-07 60.5 182 27.5
CSS0011737 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 2.4e-07 60.5 182 27.5
Zm00001eb011730 Zea mays HOM05D005325 ORTHO05D008457 4.1e-07 59.7 185 24.9
Aqoxy4G02653 Aquilegia oxysepala HOM05D005325 ORTHO05D008457 5.4e-07 59.3 178 28.1
MBI14_g04425_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 7.0e-07 58.9 180 26.7
Mapoly0026s0005 Marchantia polymorpha HOM05D005325 ORTHO05D008457 9.2e-07 58.5 183 27.3
AT2G29640 Arabidopsis thaliana HOM05D005325 ORTHO05D008457 1.6e-06 57.8 162 25.9
MSTRG.18491 Avicennia marina HOM05D005325 ORTHO05D008457 1.6e-06 57.8 182 27.5
Prupe.6G060500 Prunus persica HOM05D005325 ORTHO05D008457 1.6e-06 57.8 182 29.1
COL.COLO4_19112 Corchorus olitorius HOM05D005325 ORTHO05D008457 2.0e-06 57.4 189 25.4
LjContig00155g0003403 Lotus japonicus HOM05D005325 ORTHO05D008457 2.0e-06 57.4 187 27.8
Actinidia25148 Actinidia chinensis HOM05D005325 ORTHO05D008457 2.7e-06 57.0 180 27.8
Ca_05587_v3 Cicer arietinum L. HOM05D005325 ORTHO05D008457 2.7e-06 57.0 162 28.4
FvH4_5g19731 Fragaria vesca HOM05D005750 ORTHO05D035649 2.7e-06 57.0 59 59.3
Phvul.008G262400 Phaseolus vulgaris HOM05D005325 ORTHO05D008457 2.7e-06 57.0 177 28.2
Ciclev10029368m.g Citrus clementina HOM05D005325 ORTHO05D008457 3.5e-06 56.6 194 27.8
Aa31LG5G6860 Aethionema arabicum HOM05D005325 ORTHO05D008457 4.6e-06 56.2 178 26.4
Lalb_Chr04g0252301 Lupinus albus HOM05D005325 ORTHO05D008457 4.6e-06 56.2 179 27.4
Peaxi162Scf00116g00163 Petunia axillaris HOM05D005325 ORTHO05D008457 5.9e-06 55.8 178 27.0
AUR62020101 Chenopodium quinoa HOM05D005325 ORTHO05D008457 7.8e-06 55.5 182 27.5
ECA248G3745 Erigeron canadensis HOM05D005325 ORTHO05D008457 7.8e-06 55.5 182 28.0
Medtr5g069880 Medicago truncatula HOM05D005325 ORTHO05D008457 7.8e-06 55.5 179 26.8
Oeu019913.1 Olea europaea HOM05D005325 ORTHO05D008457 7.8e-06 55.5 181 26.0


User provided reference genes

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