Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc53.52 Carica papaya HOM05D003156 ORTHO05D003508 1.6e-219 765.8 391 100.0
Cpa.g.sc466.10 Carica papaya HOM05D003156 ORTHO05D003508 3.0e-173 612.1 391 83.4
Cfa001606 Carpinus fangiana HOM05D003156 ORTHO05D003508 6.9e-117 424.9 408 57.4
Haze_16918 Corylus avellana HOM05D003156 ORTHO05D003508 3.8e-115 419.1 404 57.2
CiPaw.02G175200 Carya illinoinensis HOM05D003156 ORTHO05D003508 1.1e-111 407.5 412 57.3
CiPaw.01G274600 Carya illinoinensis HOM05D003156 ORTHO05D003508 1.6e-110 403.7 410 57.3
Ciclev10030482m.g Citrus clementina HOM05D003156 ORTHO05D003508 3.7e-110 402.5 413 55.7
Thecc.10G070400 Theobroma cacao HOM05D003156 ORTHO05D003508 1.3e-104 384.0 395 57.0
Manes.10G044400 Manihot esculenta HOM05D003156 ORTHO05D003508 2.5e-103 379.8 398 55.5
Potri.010G220000 Populus trichocarpa HOM05D003156 ORTHO05D003508 2.1e-102 376.7 403 55.3
Potri.008G041900 Populus trichocarpa HOM05D003156 ORTHO05D003508 4.2e-98 362.5 383 55.4
Prupe.2G215600 Prunus persica HOM05D003156 ORTHO05D003508 4.2e-98 362.5 413 51.1
Sabra10G0169800 Salix brachista HOM05D003156 ORTHO05D003508 1.6e-97 360.5 403 53.6
COL.COLO4_23712 Corchorus olitorius HOM05D003156 ORTHO05D003508 4.8e-94 349.0 399 53.1
CSS0000465 Camellia sinensis var. sinensis HOM05D003156 ORTHO05D003508 1.1e-93 347.8 411 53.0
Duzib106G1668 Durio zibethinus HOM05D003156 ORTHO05D003508 2.4e-93 346.7 396 53.3
TWI15G0830 Tripterygium wilfordii HOM05D003156 ORTHO05D003508 1.2e-92 344.4 399 51.1
TWI38G2393 Tripterygium wilfordii HOM05D003156 ORTHO05D003508 2.2e-91 340.1 401 50.9
QL08p056552 Quercus lobata HOM05D003156 ORTHO05D003508 5.0e-91 339.0 419 50.6
Sabra08G0028800 Salix brachista HOM05D003156 ORTHO05D003508 9.4e-90 334.7 386 51.8
MD01G1110800 Malus domestica HOM05D003156 ORTHO05D003508 7.9e-89 331.6 412 50.2
CANSAT56G0537 Cannabis sativa HOM05D003156 ORTHO05D003508 2.0e-87 327.0 412 45.6
Dinv31359 Davidia involucrata HOM05D003156 ORTHO05D003508 2.5e-87 326.6 412 50.7
RcHm_v2.0_Chr1g0363841 Rosa chinensis HOM05D003156 ORTHO05D003508 1.4e-85 320.9 405 50.4
Glyma.10G212600 Glycine max HOM05D003156 ORTHO05D003508 5.3e-85 318.9 400 47.8
FvH4_7g19850 Fragaria vesca HOM05D003156 ORTHO05D003508 2.0e-84 317.0 411 48.4
Manes.07G103600 Manihot esculenta HOM05D003156 ORTHO05D003508 1.7e-83 313.9 414 47.8
FAN06G3106 Fragaria x ananassa HOM05D003156 ORTHO05D003508 2.9e-83 313.2 413 48.2
Hma1.2p1_1203F.1_g266910 Hydrangea macrophylla HOM05D003156 ORTHO05D003508 2.9e-83 313.2 411 49.1
CSS0022533 Camellia sinensis var. sinensis HOM05D003156 ORTHO05D003508 1.9e-82 310.5 394 50.8
Glyma.20G178500 Glycine max HOM05D003156 ORTHO05D003508 2.5e-82 310.1 408 46.8
Ca_10580_v3 Cicer arietinum L. HOM05D003156 ORTHO05D003508 1.6e-81 307.4 413 47.5
Eucgr.G02815 Eucalyptus grandis HOM05D003156 ORTHO05D003508 2.7e-81 306.6 410 46.6
Medtr1g095570 Medicago truncatula HOM05D003156 ORTHO05D003508 6.1e-81 305.4 407 47.2
FAN10G3307 Fragaria x ananassa HOM05D003156 ORTHO05D003508 6.7e-80 302.0 403 48.1
Gohir.A10G207200 Gossypium hirsutum HOM05D003156 ORTHO05D003508 3.3e-79 299.7 381 48.6
Lj5g0023323 Lotus japonicus HOM05D003156 ORTHO05D003508 5.7e-79 298.9 412 43.9
CSS0028910 Camellia sinensis var. sinensis HOM05D003156 ORTHO05D003508 1.7e-78 297.4 414 48.1
Gohir.D10G215300 Gossypium hirsutum HOM05D003156 ORTHO05D003508 2.8e-78 296.6 381 48.0
Gorai.011G240800 Gossypium raimondii HOM05D003156 ORTHO05D003508 3.7e-78 296.2 384 49.5
VMungo0720G1431 Vigna mungo HOM05D003156 ORTHO05D003508 1.4e-77 294.3 402 48.5
Phvul.007G093100 Phaseolus vulgaris HOM05D003156 ORTHO05D003508 1.8e-77 293.9 399 47.4
FAN01G2311 Fragaria x ananassa HOM05D003156 ORTHO05D003508 1.2e-76 291.2 410 45.6
Atru.chr12.725 Acer truncatum HOM05D003156 ORTHO05D003508 1.6e-76 290.8 375 48.0
Lalb_Chr06g0162221 Lupinus albus HOM05D003156 ORTHO05D003508 1.6e-76 290.8 401 44.4
FAN03G0982 Fragaria x ananassa HOM05D003156 ORTHO05D003508 7.7e-76 288.5 413 46.2
Actinidia38262 Actinidia chinensis HOM05D003156 ORTHO05D003508 5.0e-75 285.8 381 49.1
Lj1C919T3 Lonicera japonica HOM05D003156 ORTHO05D003508 2.1e-73 280.4 376 51.1
Psat6g185160 Pisum sativum HOM05D003156 ORTHO05D003508 2.7e-73 280.0 410 44.4
arahy.Tifrunner.gnm1.ann1.PUBH8J Arachis hypogaea HOM05D003156 ORTHO05D003508 8.0e-73 278.5 416 45.0
PGR142G2490 Punica granatum HOM05D003156 ORTHO05D003508 8.0e-73 278.5 373 48.8
Lalb_Chr02g0141981 Lupinus albus HOM05D003156 ORTHO05D003508 1.1e-71 274.6 406 44.1
arahy.Tifrunner.gnm1.ann1.0MFP8V Arachis hypogaea HOM05D003156 ORTHO05D003508 1.5e-71 274.2 413 45.3
Lalb_Chr01g0010131 Lupinus albus HOM05D003156 ORTHO05D003508 1.8e-69 267.3 411 41.8
Lalb_Chr03g0035991 Lupinus albus HOM05D003156 ORTHO05D003508 5.3e-69 265.8 415 41.9
Rhsim09G0153200 Rhododendron simsii HOM05D003156 ORTHO05D003508 4.5e-68 262.7 377 46.4
Peaxi162Scf00108g00911 Petunia axillaris HOM05D003156 ORTHO05D003508 1.0e-67 261.5 300 50.3
Nn2g13035 Nelumbo nucifera HOM05D003156 ORTHO05D003508 1.3e-67 261.2 391 44.0
AUR62027953 Chenopodium quinoa HOM05D003156 ORTHO05D003508 1.6e-65 254.2 347 46.7
vmacro04882 Vaccinium macrocarpon HOM05D003156 ORTHO05D003508 2.7e-65 253.4 378 45.0
Nitab4.5_0004081g0040 Nicotiana tabacum HOM05D003156 ORTHO05D003508 3.6e-65 253.1 283 54.1
Nitab4.5_0000233g0120 Nicotiana tabacum HOM05D003156 ORTHO05D003508 4.7e-65 252.7 283 54.1
SalBow3G0597 Salvia bowleyana HOM05D003156 ORTHO05D003508 6.1e-65 252.3 373 44.2
TPR.G1826 Trifolium pratense HOM05D003156 ORTHO05D003508 1.0e-64 251.5 409 43.3
AUR62020759 Chenopodium quinoa HOM05D003156 ORTHO05D003508 4.0e-64 249.6 346 46.2
Lalb_Chr19g0129611 Lupinus albus HOM05D003156 ORTHO05D003508 5.2e-64 249.2 410 40.5
MSTRG.8149 Avicennia marina HOM05D003156 ORTHO05D003508 1.3e-62 244.6 373 42.4
DCAR_006452 Daucus carota HOM05D003156 ORTHO05D003508 1.1e-61 241.5 398 45.2
Duzib114G0389 Durio zibethinus HOM05D003156 ORTHO05D003508 1.8e-61 240.7 311 48.6
Sopen04g018550 Solanum pennellii HOM05D003156 ORTHO05D003508 4.1e-61 239.6 353 46.5
ClCG05G020880 Citrullus lanatus HOM05D003156 ORTHO05D003508 5.4e-61 239.2 391 42.7
CAN.G131.2 Capsicum annuum HOM05D003156 ORTHO05D003508 5.9e-60 235.7 303 48.5
Solyc04g049120.4 Solanum lycopersicum HOM05D003156 ORTHO05D003508 5.9e-60 235.7 353 45.3
Actinidia03046 Actinidia chinensis HOM05D003156 ORTHO05D003508 7.7e-60 235.3 362 45.3
MSTRG.370 Avicennia marina HOM05D003156 ORTHO05D003508 7.7e-60 235.3 407 39.1
Oeu007399.2 Olea europaea HOM05D003156 ORTHO05D003508 1.5e-58 231.1 382 40.3
CsaV3_5G036430 Cucumis sativus L. HOM05D003156 ORTHO05D003508 2.5e-58 230.3 390 41.8
TAR633G1985 Trochodendron aralioides HOM05D003156 ORTHO05D003508 3.2e-58 229.9 409 42.8
Cc02_g11460 Coffea canephora HOM05D003156 ORTHO05D003508 7.2e-58 228.8 413 42.4
MELO3C012441.2 Cucumis melo HOM05D003156 ORTHO05D003508 7.2e-58 228.8 345 43.5
Oeu043931.1 Olea europaea HOM05D003156 ORTHO05D003508 9.5e-58 228.4 357 43.7
EL10Ac2g03591 Beta vulgaris HOM05D003156 ORTHO05D003508 1.6e-57 227.6 352 44.0
Nn2g10723 Nelumbo nucifera HOM05D003156 ORTHO05D003508 2.1e-57 227.3 417 42.0
THA.LOC104819148 Tarenaya hassleriana HOM05D003156 ORTHO05D003508 2.7e-57 226.9 372 40.1
Oeu033854.1 Olea europaea HOM05D003156 ORTHO05D003508 1.3e-54 218.0 353 41.1
Aqoxy2G01803 Aquilegia oxysepala HOM05D003156 ORTHO05D003508 1.1e-53 214.9 356 44.4
Ah.11g043470 Amaranthus hybridus HOM05D003156 ORTHO05D003508 1.3e-51 208.0 381 40.9
Sed0017725 Sechium edule HOM05D003156 ORTHO05D003508 3.8e-51 206.5 361 39.1
Hund19345 Selenicereus undatus HOM05D003156 ORTHO05D003508 1.8e-48 197.6 365 38.9
Migut.F01767 Erythranthe guttata HOM05D003156 ORTHO05D003508 6.8e-48 195.7 418 37.1
TAR369G0111 Trochodendron aralioides HOM05D003156 ORTHO05D003508 1.1e-45 188.3 386 39.6
Gohir.A13G024600 Gossypium hirsutum HOM05D003156 ORTHO05D003508 3.5e-44 183.3 272 46.3
Sed0017215 Sechium edule HOM05D003156 ORTHO05D003508 3.9e-43 179.9 358 38.0
Gorai.013G026300 Gossypium raimondii HOM05D003156 ORTHO05D003508 1.2e-41 174.9 272 44.5
MBI14_g09786_MAGBIO Magnolia biondii HOM05D003156 ORTHO05D003508 2.8e-41 173.7 436 35.6
SGA_v2.0_scaffold51G18682 Striga asiatica HOM05D003156 ORTHO05D003508 8.0e-41 172.2 377 35.5
Sc20g0001950 Simmondsia chinensis HOM05D003156 ORTHO05D003508 6.8e-40 169.1 328 38.7
Psat1g100160 Pisum sativum HOM05D003156 ORTHO05D003508 1.2e-39 168.3 345 36.5
ECA238G0789 Erigeron canadensis HOM05D003156 ORTHO05D003508 2.2e-38 164.1 278 45.0
SGA_v2.0_scaffold341G49358 Striga asiatica HOM05D003156 ORTHO05D003508 8.3e-38 162.2 421 34.4
PSO384G3096 Papaver somniferum HOM05D003156 ORTHO05D003508 6.0e-36 156.0 386 36.8
Lj2g0025480 Lotus japonicus HOM05D003156 ORTHO05D003508 1.9e-34 151.0 385 34.5
PSO339G2433 Papaver somniferum HOM05D003156 ORTHO05D003508 1.9e-34 151.0 436 34.2
Ca_04674_v3 Cicer arietinum L. HOM05D003156 ORTHO05D003508 7.5e-31 139.0 399 33.1
Oeu042736.1 Olea europaea HOM05D003156 ORTHO05D003508 8.3e-30 135.6 329 34.0
Actinidia08030 Actinidia chinensis HOM05D003156 ORTHO05D003508 3.2e-29 133.7 294 36.1
HanXRQChr14g0457261 Helianthus annuus HOM05D003156 ORTHO05D003508 1.0e-27 128.6 301 37.5
Nn3g21281 Nelumbo nucifera HOM05D003156 ORTHO05D003508 1.5e-26 124.8 155 48.4
SalBow4G2724 Salvia bowleyana HOM05D003156 ORTHO05D003508 7.3e-26 122.5 395 31.6
Gohir.D13G023500 Gossypium hirsutum HOM05D003156 ORTHO05D003508 5.2e-24 116.3 217 40.6
HanXRQChr11g0323301 Helianthus annuus HOM05D003156 ORTHO05D003508 6.6e-19 99.4 268 35.4
AL5G32840 Arabidopsis lyrata HOM05D003156 ORTHO05D003508 8.6e-19 99.0 232 34.1
AT3G52250 Arabidopsis thaliana HOM05D003156 ORTHO05D003508 1.1e-18 98.6 231 35.9
Oeu014390.1 Olea europaea HOM05D003156 ORTHO05D003508 4.3e-18 96.7 324 32.1
Sp5g10010 Schrenkiella parvula HOM05D003156 ORTHO05D003508 4.3e-18 96.7 198 35.9
Carub.0005s1861 Capsella rubella HOM05D003156 ORTHO05D003508 5.6e-18 96.3 162 39.5
Dinv11794 Davidia involucrata HOM05D003156 ORTHO05D003508 1.2e-17 95.1 171 41.5
GSVIVG01016309001 Vitis vinifera HOM05D003156 ORTHO05D003508 6.2e-17 92.8 190 34.2
THA.LOC104806084 Tarenaya hassleriana HOM05D003156 ORTHO05D003508 8.1e-17 92.4 279 29.7
Aa31LG10G7350 Aethionema arabicum HOM05D003156 ORTHO05D003508 1.8e-16 91.3 207 35.7
Thhalv10010054m.g Eutrema salsugineum HOM05D003156 ORTHO05D003508 2.4e-16 90.9 195 35.4
MELO3C002897.2 Cucumis melo HOM05D003156 ORTHO05D003508 4.0e-16 90.1 251 33.9
CDE02G1002 Ceratophyllum demersum HOM05D003156 ORTHO05D003508 5.2e-16 89.7 379 28.5
CARHR162010 Cardamine hirsuta HOM05D003156 ORTHO05D003508 8.9e-16 89.0 213 33.3
A09p45310 Brassica napus HOM05D003156 ORTHO05D003508 1.2e-15 88.6 160 37.5
C08p27500 Brassica napus HOM05D003156 ORTHO05D003508 1.2e-15 88.6 160 37.5
BolC8t50370H Brassica oleracea HOM05D003156 ORTHO05D003508 1.2e-15 88.6 160 37.5
CsaV3_5G025770 Cucumis sativus L. HOM05D003156 ORTHO05D003508 1.2e-15 88.6 237 34.2
TPR.G36666 Trifolium pratense HOM05D003156 ORTHO05D003508 1.2e-15 88.6 397 29.2
BraA03t13976Z Brassica rapa HOM05D003156 ORTHO05D003508 3.4e-15 87.0 163 37.4
BraA09t39994Z Brassica rapa HOM05D003156 ORTHO05D003508 7.6e-15 85.9 160 36.9
A03p48760 Brassica napus HOM05D003156 ORTHO05D003508 1.7e-14 84.7 163 36.8
C07p46850 Brassica napus HOM05D003156 ORTHO05D003508 1.7e-14 84.7 186 34.4
BolC7t45201H Brassica oleracea HOM05D003156 ORTHO05D003508 1.7e-14 84.7 186 34.4
Nn2g15341 Nelumbo nucifera HOM05D003156 ORTHO05D003508 6.4e-14 82.8 117 41.0
PGR044G0836 Punica granatum HOM05D003156 ORTHO05D003508 8.4e-14 82.4 258 31.4
BcaC07g39597 Brassica carinata HOM05D003156 ORTHO05D003508 1.1e-13 82.0 155 36.8
Sed0022604 Sechium edule HOM05D003156 ORTHO05D003508 4.2e-13 80.1 168 35.7
Sed0025548 Sechium edule HOM05D003156 ORTHO05D003508 4.6e-12 76.6 245 31.4
Nn6g34188 Nelumbo nucifera HOM05D003156 ORTHO05D003508 2.5e-10 70.9 100 43.0
Lsat_1_v5_gn_2_113780 Lactuca sativa HOM05D003156 ORTHO05D003508 7.3e-10 69.3 238 33.6
unitig_0.g194 Utricularia gibba HOM05D003156 ORTHO05D003508 9.6e-10 68.9 266 27.8
Actinidia03043 Actinidia chinensis HOM05D003156 ORTHO05D003508 1.3e-09 68.6 49 65.3


User provided reference genes

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