Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc523.4 Carica papaya HOM05D007606 ORTHO05D009600 3.9e-40 169.1 99 100.0
MELO3C017454.2 Cucumis melo HOM05D007606 ORTHO05D009600 6.1e-33 145.2 99 76.8
CsaV3_1G031690 Cucumis sativus L. HOM05D007606 ORTHO05D009600 1.0e-32 144.4 99 75.8
Sed0005573 Sechium edule HOM05D007606 ORTHO05D009600 3.0e-32 142.9 99 76.8
FvH4_4g07990 Fragaria vesca HOM05D007606 ORTHO05D009600 1.5e-31 140.6 99 75.8
THA.LOC104813519 Tarenaya hassleriana HOM05D007606 ORTHO05D009600 3.3e-31 139.4 105 73.3
Prupe.1G084400 Prunus persica HOM05D007606 ORTHO05D009600 4.3e-31 139.0 99 73.7
Medtr4g127860 Medicago truncatula HOM05D007606 ORTHO05D009600 5.7e-31 138.7 98 80.6
Atru.chr7.594 Acer truncatum HOM05D007606 ORTHO05D009600 9.7e-31 137.9 99 82.8
CiPaw.07G193100 Carya illinoinensis HOM05D007606 ORTHO05D009600 1.3e-30 137.5 102 79.4
FAN07G2281 Fragaria x ananassa HOM05D007606 ORTHO05D009600 6.3e-30 135.2 99 74.7
FAN17G2268 Fragaria x ananassa HOM05D007606 ORTHO05D009600 6.3e-30 135.2 99 75.8
Carub.0008s1789 Capsella rubella HOM05D007606 ORTHO05D009600 1.1e-29 134.4 107 71.0
Manes.14G154600 Manihot esculenta HOM05D007606 ORTHO05D009600 1.1e-29 134.4 102 70.6
Potri.018G091300 Populus trichocarpa HOM05D007606 ORTHO05D009600 1.1e-29 134.4 99 71.7
Glyma.17G062400 Glycine max HOM05D007606 ORTHO05D009600 1.8e-29 133.7 99 74.7
Nn5g27171 Nelumbo nucifera HOM05D007606 ORTHO05D009600 1.8e-29 133.7 99 70.7
Actinidia01312 Actinidia chinensis HOM05D007606 ORTHO05D009600 2.4e-29 133.3 96 75.0
Sabra18G0078500 Salix brachista HOM05D007606 ORTHO05D009600 2.4e-29 133.3 96 72.9
QL02p097943 Quercus lobata HOM05D007606 ORTHO05D009600 3.1e-29 132.9 102 76.5
COL.COLO4_37736 Corchorus olitorius HOM05D007606 ORTHO05D009600 4.1e-29 132.5 98 79.6
Aa31LG3G13250 Aethionema arabicum HOM05D007606 ORTHO05D009600 5.3e-29 132.1 102 68.6
Ciclev10009582m.g Citrus clementina HOM05D007606 ORTHO05D009600 6.9e-29 131.7 101 81.2
Gohir.D08G193500 Gossypium hirsutum HOM05D007606 ORTHO05D009600 6.9e-29 131.7 99 78.8
Sc18g0007510 Simmondsia chinensis HOM05D007606 ORTHO05D009600 6.9e-29 131.7 99 72.7
BolC2t07555H Brassica oleracea HOM05D007606 ORTHO05D009600 9.0e-29 131.3 99 72.7
AL8G33350 Arabidopsis lyrata HOM05D007606 ORTHO05D009600 1.2e-28 131.0 103 68.0
RcHm_v2.0_Chr4g0401721 Rosa chinensis HOM05D007606 ORTHO05D009600 1.2e-28 131.0 99 78.8
EL10Ac8g18293 Beta vulgaris HOM05D007606 ORTHO05D009600 1.5e-28 130.6 104 69.2
MD16G1256400 Malus domestica HOM05D007606 ORTHO05D009600 1.5e-28 130.6 98 72.4
Ah.09g229950 Amaranthus hybridus HOM05D007606 ORTHO05D009600 2.0e-28 130.2 102 68.6
TAR383G0717 Trochodendron aralioides HOM05D007606 ORTHO05D009600 2.6e-28 129.8 99 79.8
Sp6g19090 Schrenkiella parvula HOM05D007606 ORTHO05D009600 3.4e-28 129.4 103 68.9
CAN.G321.18 Capsicum annuum HOM05D007606 ORTHO05D009600 4.5e-28 129.0 98 78.6
MD13G1252200 Malus domestica HOM05D007606 ORTHO05D009600 4.5e-28 129.0 99 72.7
PGSC0003DMG400004088 Solanum tuberosum HOM05D007606 ORTHO05D009600 4.5e-28 129.0 105 81.0
BcaC03g14159 Brassica carinata HOM05D007606 ORTHO05D009600 5.9e-28 128.6 99 71.7
Glyma.13G097200 Glycine max HOM05D007606 ORTHO05D009600 5.9e-28 128.6 98 77.6
Sopen07g006820 Solanum pennellii HOM05D007606 ORTHO05D009600 5.9e-28 128.6 106 79.2
CANSAT11G0497 Cannabis sativa HOM05D007606 ORTHO05D009600 1.0e-27 127.9 100 73.0
HanXRQChr12g0365451 Helianthus annuus HOM05D007606 ORTHO05D009600 1.0e-27 127.9 94 72.3
TWI32G0742 Tripterygium wilfordii HOM05D007606 ORTHO05D009600 1.0e-27 127.9 99 73.7
Aqoxy7G03025 Aquilegia oxysepala HOM05D007606 ORTHO05D009600 1.3e-27 127.5 100 69.0
PSO063G2142 Papaver somniferum HOM05D007606 ORTHO05D009600 1.3e-27 127.5 95 69.5
BcaC04g19971 Brassica carinata HOM05D007606 ORTHO05D009600 2.2e-27 126.7 102 69.6
C09p49270 Brassica napus HOM05D007606 ORTHO05D009600 2.2e-27 126.7 102 69.6
BolC9t57778H Brassica oleracea HOM05D007606 ORTHO05D009600 2.2e-27 126.7 102 69.6
Hma1.2p1_1025F.1_g249400 Hydrangea macrophylla HOM05D007606 ORTHO05D009600 2.9e-27 126.3 70 90.0
Eucgr.C02351 Eucalyptus grandis HOM05D007606 ORTHO05D009600 3.8e-27 125.9 98 69.4
AT5G57370 Arabidopsis thaliana HOM05D007606 ORTHO05D009600 5.0e-27 125.6 101 67.3
Gorai.004G203800 Gossypium raimondii HOM05D007606 ORTHO05D009600 6.5e-27 125.2 100 78.0
Psat4g012880 Pisum sativum HOM05D007606 ORTHO05D009600 1.1e-26 124.4 68 89.7
SHI02893 Sapria himalayana HOM05D007606 ORTHO05D009600 1.1e-26 124.4 98 64.3
Gohir.A08G174900 Gossypium hirsutum HOM05D007606 ORTHO05D009600 2.5e-26 123.2 104 76.0
C02p14290 Brassica napus HOM05D007606 ORTHO05D009600 5.5e-26 122.1 99 73.7
Rhsim03G0264900 Rhododendron simsii HOM05D007606 ORTHO05D009600 5.5e-26 122.1 96 69.8
Lsat_1_v5_gn_8_67821 Lactuca sativa HOM05D007606 ORTHO05D009600 7.2e-26 121.7 97 70.1
CARHR271170 Cardamine hirsuta HOM05D007606 ORTHO05D009600 1.2e-25 120.9 107 61.7
Duzib168G1965 Durio zibethinus HOM05D007606 ORTHO05D009600 1.6e-25 120.6 99 75.8
A02p08550 Brassica napus HOM05D007606 ORTHO05D009600 2.7e-25 119.8 98 67.3
Phvul.003G144300 Phaseolus vulgaris HOM05D007606 ORTHO05D009600 3.6e-25 119.4 98 71.4
BcaB05g22341 Brassica carinata HOM05D007606 ORTHO05D009600 4.6e-25 119.0 98 67.3
Lj5P601T23 Lonicera japonica HOM05D007606 ORTHO05D009600 6.1e-25 118.6 99 75.8
CSS0005882 Camellia sinensis var. sinensis HOM05D007606 ORTHO05D009600 7.9e-25 118.2 71 87.3
Thecc.09G175900 Theobroma cacao HOM05D007606 ORTHO05D009600 7.9e-25 118.2 98 74.5
Hund26341 Selenicereus undatus HOM05D007606 ORTHO05D009600 2.3e-24 116.7 109 69.7
GSVIVG01029223001 Vitis vinifera HOM05D007606 ORTHO05D009600 3.0e-24 116.3 63 90.5
Oeu025687.1 Olea europaea HOM05D007606 ORTHO05D009600 8.8e-24 114.8 64 85.9
SGA_v2.0_scaffold66G22417 Striga asiatica HOM05D007606 ORTHO05D009600 1.1e-23 114.4 67 83.6
BraA02t05924Z Brassica rapa HOM05D007606 ORTHO05D009600 1.5e-23 114.0 66 86.4
Cc06_g13140 Coffea canephora HOM05D007606 ORTHO05D009600 2.5e-23 113.2 65 86.2
FAN12G2299 Fragaria x ananassa HOM05D007606 ORTHO05D009600 2.5e-23 113.2 85 71.8
arahy.Tifrunner.gnm1.ann1.TB3R4X Arachis hypogaea HOM05D007606 ORTHO05D009600 4.3e-23 112.5 86 70.9
Lalb_Chr13g0300161 Lupinus albus HOM05D007606 ORTHO05D009600 4.3e-23 112.5 98 69.4
MSTRG.6226 Avicennia marina HOM05D007606 ORTHO05D009600 7.4e-23 111.7 65 83.1
Migut.J01493 Erythranthe guttata HOM05D007606 ORTHO05D009600 7.4e-23 111.7 65 83.1
HPP92_010764 Vanilla planifolia HOM05D007606 ORTHO05D009600 1.3e-22 110.9 62 87.1
Os02g0461600 Oryza sativa ssp. japonica HOM05D007606 ORTHO05D009600 1.7e-22 110.5 71 78.9
A10p14850 Brassica napus HOM05D007606 ORTHO05D009600 2.2e-22 110.2 62 87.1
BraA10t43563Z Brassica rapa HOM05D007606 ORTHO05D009600 2.2e-22 110.2 62 87.1
Zm00001eb327770 Zea mays HOM05D007606 ORTHO05D009600 2.2e-22 110.2 63 85.7
HanXRQChr08g0212621 Helianthus annuus HOM05D007606 ORTHO05D009600 3.7e-22 109.4 93 64.5
SEGI_36552 Sequoiadendron giganteum HOM05D007606 ORTHO05D009600 3.7e-22 109.4 99 65.7
Nitab4.5_0000055g0310 Nicotiana tabacum HOM05D007606 ORTHO05D009600 1.8e-21 107.1 98 69.4
AUR62021308 Chenopodium quinoa HOM05D007606 ORTHO05D009600 4.1e-21 105.9 55 92.7
PSO339G0750 Papaver somniferum HOM05D007606 ORTHO05D009600 4.1e-21 105.9 96 62.5
BcaB08g36096 Brassica carinata HOM05D007606 ORTHO05D009600 6.9e-21 105.1 66 83.3
Ca_21234_v3 Cicer arietinum L. HOM05D007606 ORTHO05D009600 9.1e-21 104.8 52 96.2
FAN22G0657 Fragaria x ananassa HOM05D007606 ORTHO05D009600 1.7e-19 100.5 85 67.1
AagrBONN_evm.TU.Sc2ySwM_362.441 Anthoceros agrestis HOM05D007606 ORTHO05D009600 3.2e-18 96.3 95 56.8
Mapoly0026s0023 Marchantia polymorpha HOM05D007606 ORTHO05D009600 9.4e-18 94.7 101 53.5
Pp3c7_10050 Physcomitrium patens HOM05D007606 ORTHO05D009600 1.6e-17 94.0 99 54.5
CBR_g51476 Chara braunii HOM05D007606 ORTHO05D009600 6.1e-17 92.0 62 74.2
SMO358G0723 Selaginella moellendorffii HOM05D007606 ORTHO05D009600 3.0e-16 89.7 60 73.3
Cre10.g465950 Chlamydomonas reinhardtii HOM05D007606 ORTHO05D009600 5.5e-10 68.9 60 58.3


User provided reference genes

Program Settings