Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc52.91 Carica papaya HOM05D004045 ORTHO05D004923 0.0e+00 1149.8 593 100.0
Manes.01G201500 Manihot esculenta HOM05D004045 ORTHO05D004923 8.8e-233 810.4 595 74.3
Gorai.001G243100 Gossypium raimondii HOM05D004045 ORTHO05D004923 6.3e-231 804.3 600 73.3
Gohir.D07G215300 Gossypium hirsutum HOM05D004045 ORTHO05D004923 1.1e-230 803.5 600 72.8
Atru.chr5.1570 Acer truncatum HOM05D004045 ORTHO05D004923 4.5e-229 798.1 591 73.9
Gorai.001G243000 Gossypium raimondii HOM05D004045 ORTHO05D004923 7.7e-229 797.3 600 71.3
Gohir.A07G209100 Gossypium hirsutum HOM05D004045 ORTHO05D004923 1.3e-228 796.6 599 71.6
Gohir.D07G215000 Gossypium hirsutum HOM05D004045 ORTHO05D004923 2.1e-226 789.3 600 71.0
CiPaw.03G257500 Carya illinoinensis HOM05D004045 ORTHO05D004923 8.3e-223 777.3 606 70.3
Duzib133G0161 Durio zibethinus HOM05D004045 ORTHO05D004923 3.1e-222 775.4 610 70.2
Actinidia09090 Actinidia chinensis HOM05D004045 ORTHO05D004923 1.2e-221 773.5 595 69.2
TWI12G0443 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 3.5e-221 771.9 577 70.9
Dinv22479 Davidia involucrata HOM05D004045 ORTHO05D004923 1.3e-220 770.0 605 69.4
Haze_24534 Corylus avellana HOM05D004045 ORTHO05D004923 2.9e-220 768.8 567 73.7
TAR362G1267 Trochodendron aralioides HOM05D004045 ORTHO05D004923 8.6e-220 767.3 590 69.5
Thecc.01G267300 Theobroma cacao HOM05D004045 ORTHO05D004923 1.1e-219 766.9 604 70.5
TWI18G1228 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 3.3e-219 765.4 593 68.5
Ciclev10019274m.g Citrus clementina HOM05D004045 ORTHO05D004923 1.6e-218 763.1 598 71.7
Duzib138G0995 Durio zibethinus HOM05D004045 ORTHO05D004923 1.6e-218 763.1 597 70.7
Duzib211G0616 Durio zibethinus HOM05D004045 ORTHO05D004923 1.6e-218 763.1 600 70.0
GSVIVG01000724001 Vitis vinifera HOM05D004045 ORTHO05D004923 3.6e-218 761.9 585 70.9
Cfa002328 Carpinus fangiana HOM05D004045 ORTHO05D004923 8.0e-218 760.8 567 72.7
Potri.005G218400 Populus trichocarpa HOM05D004045 ORTHO05D004923 8.0e-218 760.8 589 69.4
Potri.002G044800 Populus trichocarpa HOM05D004045 ORTHO05D004923 1.0e-217 760.4 589 70.3
QL12p042733 Quercus lobata HOM05D004045 ORTHO05D004923 7.5e-216 754.2 616 67.5
PGR119G1275 Punica granatum HOM05D004045 ORTHO05D004923 1.7e-215 753.1 604 67.7
Cc01_g18840 Coffea canephora HOM05D004045 ORTHO05D004923 1.9e-211 739.6 593 68.0
Nn1g02572 Nelumbo nucifera HOM05D004045 ORTHO05D004923 8.0e-210 734.2 602 67.6
Nitab4.5_0000187g0210 Nicotiana tabacum HOM05D004045 ORTHO05D004923 8.9e-209 730.7 631 63.5
Phvul.007G176500 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 1.2e-208 730.3 583 66.9
vmacro14871 Vaccinium macrocarpon HOM05D004045 ORTHO05D004923 1.5e-208 729.9 591 68.0
CSS0003244 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 5.8e-208 728.0 594 67.7
CSS0008019 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 1.3e-207 726.9 595 67.7
VMungo0720G0425 Vigna mungo HOM05D004045 ORTHO05D004923 2.2e-207 726.1 578 66.6
Glyma.19G161300 Glycine max HOM05D004045 ORTHO05D004923 2.9e-207 725.7 594 66.8
Sabra05G0167500 Salix brachista HOM05D004045 ORTHO05D004923 2.9e-207 725.7 591 66.7
MD05G1205600 Malus domestica HOM05D004045 ORTHO05D004923 6.4e-207 724.5 584 68.0
Rhsim01G0269600 Rhododendron simsii HOM05D004045 ORTHO05D004923 7.0e-206 721.1 593 67.8
Sopen09g027670 Solanum pennellii HOM05D004045 ORTHO05D004923 1.2e-205 720.3 577 66.6
PGSC0003DMG400019300 Solanum tuberosum HOM05D004045 ORTHO05D004923 3.5e-205 718.8 604 64.4
Sabra02G0035900 Salix brachista HOM05D004045 ORTHO05D004923 4.6e-205 718.4 664 62.2
Nn3g19505 Nelumbo nucifera HOM05D004045 ORTHO05D004923 6.0e-205 718.0 562 68.3
CANSAT01G0779 Cannabis sativa HOM05D004045 ORTHO05D004923 7.8e-205 717.6 604 64.1
CiPaw.04G182000 Carya illinoinensis HOM05D004045 ORTHO05D004923 3.9e-204 715.3 522 74.3
Eucgr.B01491 Eucalyptus grandis HOM05D004045 ORTHO05D004923 3.9e-204 715.3 621 65.1
Lalb_Chr02g0142411 Lupinus albus HOM05D004045 ORTHO05D004923 6.6e-204 714.5 600 64.3
Ca_09715_v3 Cicer arietinum L. HOM05D004045 ORTHO05D004923 8.6e-204 714.1 602 65.8
Solyc06g084060.3 Solanum lycopersicum HOM05D004045 ORTHO05D004923 1.5e-203 713.4 599 64.1
Prupe.8G232000 Prunus persica HOM05D004045 ORTHO05D004923 3.3e-203 712.2 613 65.4
MD10G1192800 Malus domestica HOM05D004045 ORTHO05D004923 9.5e-203 710.7 569 68.4
Dinv34570 Davidia involucrata HOM05D004045 ORTHO05D004923 2.8e-202 709.1 518 73.4
Glyma.02G142300 Glycine max HOM05D004045 ORTHO05D004923 3.6e-202 708.8 600 65.3
Sopen06g035450 Solanum pennellii HOM05D004045 ORTHO05D004923 3.6e-202 708.8 599 63.6
PGSC0003DMG400020140 Solanum tuberosum HOM05D004045 ORTHO05D004923 3.6e-202 708.8 599 63.8
CsaV3_7G027590 Cucumis sativus L. HOM05D004045 ORTHO05D004923 4.7e-202 708.4 581 66.3
MELO3C015764.2 Cucumis melo HOM05D004045 ORTHO05D004923 8.1e-202 707.6 594 65.5
Nitab4.5_0003053g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 1.1e-201 707.2 623 63.1
Lj2A1159T22 Lonicera japonica HOM05D004045 ORTHO05D004923 1.8e-201 706.4 541 71.2
Glyma.10G032000 Glycine max HOM05D004045 ORTHO05D004923 1.2e-200 703.7 597 65.7
Nitab4.5_0004899g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 2.0e-200 703.0 584 64.2
THA.LOC104804696 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 2.6e-200 702.6 573 64.0
Nitab4.5_0001044g0050 Nicotiana tabacum HOM05D004045 ORTHO05D004923 3.4e-200 702.2 596 63.6
Sed0019687 Sechium edule HOM05D004045 ORTHO05D004923 4.4e-200 701.8 590 66.1
THA.LOC104824390 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 5.8e-200 701.4 576 66.3
MBI11_g02060_MAGBIO Magnolia biondii HOM05D004045 ORTHO05D004923 7.5e-200 701.0 563 67.3
Actinidia19983 Actinidia chinensis HOM05D004045 ORTHO05D004923 9.9e-200 700.7 486 75.1
CAN.G1259.1 Capsicum annuum HOM05D004045 ORTHO05D004923 1.4e-198 696.8 591 65.0
DCAR_018449 Daucus carota HOM05D004045 ORTHO05D004923 2.4e-198 696.0 576 66.5
ClCG09G007540 Citrullus lanatus HOM05D004045 ORTHO05D004923 9.2e-198 694.1 554 70.0
Oeu025793.1 Olea europaea HOM05D004045 ORTHO05D004923 9.2e-198 694.1 605 63.5
TPR.G35731 Trifolium pratense HOM05D004045 ORTHO05D004923 9.2e-198 694.1 621 63.4
MSTRG.21511 Avicennia marina HOM05D004045 ORTHO05D004923 4.6e-197 691.8 603 63.5
Lsat_1_v5_gn_9_9980 Lactuca sativa HOM05D004045 ORTHO05D004923 4.6e-197 691.8 587 63.4
Lalb_Chr21g0306291 Lupinus albus HOM05D004045 ORTHO05D004923 4.6e-197 691.8 600 63.2
Sed0014339 Sechium edule HOM05D004045 ORTHO05D004923 1.0e-196 690.6 595 65.0
SGA_v2.0_scaffold138G35275 Striga asiatica HOM05D004045 ORTHO05D004923 1.3e-196 690.3 611 61.9
Thhalv10010227m.g Eutrema salsugineum HOM05D004045 ORTHO05D004923 1.7e-196 689.9 605 61.2
Medtr1g070515 Medicago truncatula HOM05D004045 ORTHO05D004923 5.1e-196 688.3 620 63.4
Peaxi162Scf00049g00208 Petunia axillaris HOM05D004045 ORTHO05D004923 1.5e-195 686.8 596 64.8
Carub.0005s2125 Capsella rubella HOM05D004045 ORTHO05D004923 4.3e-195 685.3 601 61.9
Psat6g057800 Pisum sativum HOM05D004045 ORTHO05D004923 1.2e-194 683.7 653 60.6
Lj5g0016746 Lotus japonicus HOM05D004045 ORTHO05D004923 1.6e-194 683.3 607 64.9
SalBow4G0878 Salvia bowleyana HOM05D004045 ORTHO05D004923 8.1e-194 681.0 541 66.5
ECA247G4082 Erigeron canadensis HOM05D004045 ORTHO05D004923 1.4e-193 680.2 622 59.6
Peaxi162Scf01311g00024 Petunia axillaris HOM05D004045 ORTHO05D004923 2.4e-193 679.5 590 63.6
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 4.0e-193 678.7 579 63.4
arahy.Tifrunner.gnm1.ann1.M5F7QZ Arachis hypogaea HOM05D004045 ORTHO05D004923 8.9e-193 677.6 618 63.3
Glyma.03G158900 Glycine max HOM05D004045 ORTHO05D004923 1.2e-192 677.2 592 63.5
arahy.Tifrunner.gnm1.ann1.CU0E1J Arachis hypogaea HOM05D004045 ORTHO05D004923 1.5e-192 676.8 619 63.3
Aqoxy5G00345 Aquilegia oxysepala HOM05D004045 ORTHO05D004923 5.8e-192 674.9 580 64.0
HanXRQChr10g0281461 Helianthus annuus HOM05D004045 ORTHO05D004923 1.3e-191 673.7 612 59.6
arahy.Tifrunner.gnm1.ann1.4ZN8WV Arachis hypogaea HOM05D004045 ORTHO05D004923 3.8e-191 672.2 601 62.1
arahy.Tifrunner.gnm1.ann1.ZDV5ZG Arachis hypogaea HOM05D004045 ORTHO05D004923 4.9e-191 671.8 600 62.0
Aa31sc64G70 Aethionema arabicum HOM05D004045 ORTHO05D004923 3.2e-190 669.1 587 61.7
FAN20G1895 Fragaria x ananassa HOM05D004045 ORTHO05D004923 9.2e-190 667.5 589 63.5
RcHm_v2.0_Chr6g0289551 Rosa chinensis HOM05D004045 ORTHO05D004923 9.2e-190 667.5 578 64.2
Gohir.A07G209200 Gossypium hirsutum HOM05D004045 ORTHO05D004923 3.5e-189 665.6 491 73.3
FvH4_2g22510 Fragaria vesca HOM05D004045 ORTHO05D004923 6.0e-189 664.8 602 62.3
AL5G35730 Arabidopsis lyrata HOM05D004045 ORTHO05D004923 7.8e-189 664.5 600 60.7
CARHR164560 Cardamine hirsuta HOM05D004045 ORTHO05D004923 3.0e-188 662.5 587 60.6
HanXRQChr15g0467051 Helianthus annuus HOM05D004045 ORTHO05D004923 3.0e-188 662.5 625 57.9
Phvul.001G156800 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 3.9e-188 662.1 573 63.2
TAR633G0766 Trochodendron aralioides HOM05D004045 ORTHO05D004923 6.6e-188 661.4 583 63.1
Sp5g07800 Schrenkiella parvula HOM05D004045 ORTHO05D004923 2.5e-187 659.4 594 61.6
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 3.3e-187 659.1 545 65.5
BolC8t50591H Brassica oleracea HOM05D004045 ORTHO05D004923 5.6e-187 658.3 584 61.0
AT3G54650 Arabidopsis thaliana HOM05D004045 ORTHO05D004923 7.3e-187 657.9 586 61.3
A09p47600 Brassica napus HOM05D004045 ORTHO05D004923 7.3e-187 657.9 584 61.8
BraA09t40216Z Brassica rapa HOM05D004045 ORTHO05D004923 7.3e-187 657.9 584 62.0
FAN27G3048 Fragaria x ananassa HOM05D004045 ORTHO05D004923 9.6e-187 657.5 600 61.8
BcaC07g39799 Brassica carinata HOM05D004045 ORTHO05D004923 1.6e-186 656.8 586 60.8
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 2.1e-186 656.4 594 62.3
C08p29800 Brassica napus HOM05D004045 ORTHO05D004923 3.6e-186 655.6 586 60.8
BcaB01g00171 Brassica carinata HOM05D004045 ORTHO05D004923 6.2e-186 654.8 584 60.8
Migut.D00375 Erythranthe guttata HOM05D004045 ORTHO05D004923 3.1e-185 652.5 595 62.0
FAN24G3385 Fragaria x ananassa HOM05D004045 ORTHO05D004923 2.9e-183 646.0 615 60.5
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 2.4e-182 642.9 629 58.8
PSO832G0351 Papaver somniferum HOM05D004045 ORTHO05D004923 3.5e-181 639.0 663 56.1
PSO210G5962 Papaver somniferum HOM05D004045 ORTHO05D004923 1.7e-180 636.7 660 55.9
A04p05190 Brassica napus HOM05D004045 ORTHO05D004923 1.9e-179 633.3 582 59.6
EL10Ac5g10476 Beta vulgaris HOM05D004045 ORTHO05D004923 2.1e-178 629.8 588 61.2
Ah.11g049960 Amaranthus hybridus HOM05D004045 ORTHO05D004923 2.8e-178 629.4 571 61.1
BcaC02g09055 Brassica carinata HOM05D004045 ORTHO05D004923 1.5e-176 623.6 572 60.0
BraA04t16229Z Brassica rapa HOM05D004045 ORTHO05D004923 3.8e-175 619.0 571 60.1
Hund02880 Selenicereus undatus HOM05D004045 ORTHO05D004923 4.9e-175 618.6 579 60.4
C04p37930 Brassica napus HOM05D004045 ORTHO05D004923 5.6e-171 605.1 560 59.3
CDE06G0297 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 5.3e-169 598.6 551 61.3
AUR62032255 Chenopodium quinoa HOM05D004045 ORTHO05D004923 9.0e-169 597.8 471 67.5
ATR0665G431 Amborella trichopoda HOM05D004045 ORTHO05D004923 3.4e-168 595.9 586 57.3
CDE02G4505 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 1.0e-164 584.3 544 60.5
HPP92_015890 Vanilla planifolia HOM05D004045 ORTHO05D004923 1.5e-163 580.5 576 55.9
unitig_22.g5466 Utricularia gibba HOM05D004045 ORTHO05D004923 1.9e-163 580.1 566 56.9
Sc24g0004300 Simmondsia chinensis HOM05D004045 ORTHO05D004923 9.7e-155 551.2 506 61.1
BcaB02g08450 Brassica carinata HOM05D004045 ORTHO05D004923 1.7e-151 540.4 589 54.0
HPP92_026284 Vanilla planifolia HOM05D004045 ORTHO05D004923 6.5e-151 538.5 619 51.4
BolC4t25368H Brassica oleracea HOM05D004045 ORTHO05D004923 3.3e-147 526.2 455 62.4
Os12g0601000 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 6.3e-146 521.9 580 51.9
Zm00001eb135530 Zea mays HOM05D004045 ORTHO05D004923 5.0e-143 512.3 607 51.1
SHI09942 Sapria himalayana HOM05D004045 ORTHO05D004923 2.4e-137 493.4 596 51.3
AUR62011940 Chenopodium quinoa HOM05D004045 ORTHO05D004923 9.1e-137 491.5 364 72.5
Zm00001eb051080 Zea mays HOM05D004045 ORTHO05D004923 3.4e-136 489.6 583 49.2
HPP92_015894 Vanilla planifolia HOM05D004045 ORTHO05D004923 2.5e-134 483.4 438 59.6
Solyc09g065880.4 Solanum lycopersicum HOM05D004045 ORTHO05D004923 2.6e-123 446.8 338 70.7
Zm00001eb031170 Zea mays HOM05D004045 ORTHO05D004923 9.1e-113 411.8 399 57.6
Oeu010137.1 Olea europaea HOM05D004045 ORTHO05D004923 1.8e-105 387.5 316 66.8
COL.COLO4_06074 Corchorus olitorius HOM05D004045 ORTHO05D004923 8.6e-103 378.6 378 57.4
SEGI_41615 Sequoiadendron giganteum HOM05D004045 ORTHO05D004923 1.5e-102 377.9 630 37.9
Os03g0633400 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 7.5e-99 365.5 323 63.2
Oeu009234.1 Olea europaea HOM05D004045 ORTHO05D004923 6.0e-64 249.6 163 81.6
arahy.Tifrunner.gnm1.ann1.RJD5GQ Arachis hypogaea HOM05D004045 ORTHO05D004923 3.1e-60 237.3 272 55.5
Oeu039511.1 Olea europaea HOM05D004045 ORTHO05D004923 2.1e-56 224.6 247 51.8
arahy.Tifrunner.gnm1.ann1.X4NPJI Arachis hypogaea HOM05D004045 ORTHO05D004923 7.6e-51 206.1 222 59.5
Hma1.2p1_0744F.1_g211840 Hydrangea macrophylla HOM05D004045 ORTHO05D004923 1.9e-46 191.4 138 76.1
CBR_g27883 Chara braunii HOM05D004045 ORTHO05D004923 3.0e-39 167.5 385 32.7
CBR_g29330 Chara braunii HOM05D004045 ORTHO05D004923 2.7e-32 144.4 477 25.6
Sc24g0004260 Simmondsia chinensis HOM05D004045 ORTHO05D004923 4.6e-32 143.7 165 56.4
PRCOL_00001919 Prasinoderma coloniale HOM05D004045 ORTHO05D004923 5.7e-30 136.7 556 24.8
Medtr2g066740 Medicago truncatula HOM05D004045 ORTHO05D004923 1.4e-23 115.5 110 55.5
Medtr0878s0020 Medicago truncatula HOM05D004045 ORTHO05D004923 2.3e-23 114.8 85 62.4
Lj1g0005140 Lotus japonicus HOM05D004045 ORTHO05D004923 7.4e-22 109.8 70 65.7
Psat7g235240 Pisum sativum HOM05D004045 ORTHO05D004923 7.0e-20 103.2 122 49.2
PSO591G0166 Papaver somniferum HOM05D004045 ORTHO05D004923 3.2e-17 94.4 83 63.9
arahy.Tifrunner.gnm1.ann1.KW8Q2S Arachis hypogaea HOM05D000023 ORTHO05D000014 5.5e-17 93.6 66 78.8
Os03g0633100 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 2.3e-15 88.2 195 34.4
Rhsim04G0076300 Rhododendron simsii HOM05D004045 ORTHO05D004923 3.0e-15 87.8 72 59.7
Rhsim07G0057800 Rhododendron simsii HOM05D003247 ORTHO05D003974 9.7e-14 82.8 62 64.5
Psat7g221000 Pisum sativum HOM05D004045 ORTHO05D004923 1.8e-12 78.6 101 47.5
AUR62027361 Chenopodium quinoa HOM05D004045 ORTHO05D005832 3.1e-12 77.8 103 45.6
Lsat_1_v5_gn_5_80480 Lactuca sativa HOM05D004045 ORTHO05D002405 2.3e-07 61.6 35 85.7
Lsat_1_v5_gn_1_65601 Lactuca sativa HOM05D001017 ORTHO05D001025 6.8e-07 60.1 36 83.3
TPR.G16396 Trifolium pratense HOM05D001219 ORTHO05D001017 2.0e-06 58.5 201 29.9
Hma1.2p1_0172F.1_g076230 Hydrangea macrophylla HOM05D004045 ORTHO05D004923 2.6e-06 58.2 35 82.9
AUR62026403 Chenopodium quinoa HOM05D012008 ORTHO05D014086 3.4e-06 57.8 70 50.0
arahy.Tifrunner.gnm1.ann1.5E42VB Arachis hypogaea HOM05D004045 ORTHO05D083177 7.5e-06 56.6 36 83.3


User provided reference genes

Program Settings