Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc50.23 Carica papaya HOM05D004104 ORTHO05D004755 5.4e-81 304.3 156 100.0
QL09p038638 Quercus lobata HOM05D004104 ORTHO05D004755 7.3e-70 267.3 157 86.0
TWI12G1345 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 1.2e-69 266.5 158 85.4
Ca_09682_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 1.8e-68 262.7 158 85.4
Lalb_Chr21g0313851 Lupinus albus HOM05D004104 ORTHO05D004755 3.1e-68 261.9 158 84.8
arahy.Tifrunner.gnm1.ann1.QEJR01 Arachis hypogaea HOM05D004104 ORTHO05D004755 4.0e-68 261.5 158 84.8
CiPaw.03G263800 Carya illinoinensis HOM05D004104 ORTHO05D004755 6.9e-68 260.8 158 84.8
VMungo0720G2373 Vigna mungo HOM05D004104 ORTHO05D004755 6.9e-68 260.8 158 84.8
Phvul.007G193100 Phaseolus vulgaris HOM05D004104 ORTHO05D004755 1.2e-67 260.0 158 84.2
Glyma.10G036900 Glycine max HOM05D004104 ORTHO05D004755 1.5e-67 259.6 158 84.8
Manes.12G032000 Manihot esculenta HOM05D004104 ORTHO05D004755 4.4e-67 258.1 158 84.2
Psat6g055120 Pisum sativum HOM05D004104 ORTHO05D004755 4.4e-67 258.1 158 84.2
CANSAT01G3088 Cannabis sativa HOM05D004104 ORTHO05D004755 2.9e-66 255.4 157 82.8
Medtr1g069925 Medicago truncatula HOM05D004104 ORTHO05D004755 4.9e-66 254.6 158 82.9
ClCG09G007780 Citrullus lanatus HOM05D000113 ORTHO05D004634 1.1e-65 253.4 158 82.3
CsaV3_7G027350 Cucumis sativus L. HOM05D004104 ORTHO05D004755 1.1e-65 253.4 158 82.3
Potri.005G223900 Populus trichocarpa HOM05D004104 ORTHO05D004755 1.9e-65 252.7 158 82.9
Thecc.01G258800 Theobroma cacao HOM05D004104 ORTHO05D004755 1.9e-65 252.7 159 84.3
TPR.G24709 Trifolium pratense HOM05D004104 ORTHO05D004755 2.4e-65 252.3 156 82.7
Gohir.A08G190000 Gossypium hirsutum HOM05D004104 ORTHO05D004755 3.2e-65 251.9 159 84.9
Atru.chr5.1672 Acer truncatum HOM05D004104 ORTHO05D004755 5.4e-65 251.1 157 82.2
Gohir.D08G208500 Gossypium hirsutum HOM05D004104 ORTHO05D004755 5.4e-65 251.1 159 84.9
Gorai.004G220900 Gossypium raimondii HOM05D004104 ORTHO05D004755 5.4e-65 251.1 159 84.9
Potri.002G038700 Populus trichocarpa HOM05D004104 ORTHO05D004755 7.1e-65 250.8 158 81.0
Sed0024271 Sechium edule HOM05D004104 ORTHO05D004755 9.3e-65 250.4 158 82.3
Duzib211G0552 Durio zibethinus HOM05D004104 ORTHO05D004755 2.1e-64 249.2 159 84.3
arahy.Tifrunner.gnm1.ann1.0Z487T Arachis hypogaea HOM05D000348 ORTHO05D000244 2.7e-64 248.8 152 82.9
Lj5g0006581 Lotus japonicus HOM05D004104 ORTHO05D004755 2.7e-64 248.8 156 82.1
Ca_09886_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 4.6e-64 248.1 155 83.9
TPR.G6322 Trifolium pratense HOM05D004104 ORTHO05D004755 4.6e-64 248.1 156 81.4
arahy.Tifrunner.gnm1.ann1.6K1PAL Arachis hypogaea HOM05D000348 ORTHO05D000244 1.3e-63 246.5 152 82.2
Prupe.8G224100 Prunus persica HOM05D004104 ORTHO05D004755 5.1e-63 244.6 158 81.0
PGR044G0499 Punica granatum HOM05D004104 ORTHO05D004755 3.3e-62 241.9 155 78.7
Eucgr.K03263 Eucalyptus grandis HOM05D004104 ORTHO05D004755 7.3e-62 240.7 155 80.6
Haze_24627 Corylus avellana HOM05D005758 ORTHO05D007218 1.6e-61 239.6 147 83.0
FAN15G0777 Fragaria x ananassa HOM05D005758 ORTHO05D007218 2.1e-61 239.2 156 79.5
FAN27G1683 Fragaria x ananassa HOM05D005758 ORTHO05D007218 2.8e-61 238.8 156 79.5
Glyma.13G123300 Glycine max HOM05D004104 ORTHO05D004755 3.6e-61 238.4 144 86.1
FAN20G0124 Fragaria x ananassa HOM05D004104 ORTHO05D004755 1.8e-60 236.1 154 79.2
MD10G1184400 Malus domestica HOM05D004104 ORTHO05D004755 1.8e-60 236.1 156 80.1
Ciclev10023660m.g Citrus clementina HOM05D004104 ORTHO05D004755 3.1e-60 235.3 172 75.0
GSVIVG01028325001 Vitis vinifera HOM05D004104 ORTHO05D004755 4.0e-60 235.0 155 77.4
Sabra02G0031000 Salix brachista HOM05D004104 ORTHO05D004755 6.9e-60 234.2 146 81.5
RcHm_v2.0_Chr6g0288171 Rosa chinensis HOM05D004104 ORTHO05D004755 4.5e-59 231.5 155 79.4
MD05G1197800 Malus domestica HOM05D004104 ORTHO05D004755 3.2e-57 225.3 163 76.1
CiPaw.01G185000 Carya illinoinensis HOM05D004104 ORTHO05D004755 4.6e-56 221.5 157 73.2
Haze_11377 Corylus avellana HOM05D004104 ORTHO05D004755 1.0e-55 220.3 157 72.6
COL.COLO4_05896 Corchorus olitorius HOM05D005758 ORTHO05D007218 2.3e-55 219.2 129 88.4
FvH4_2g21510 Fragaria vesca HOM05D005758 ORTHO05D007218 5.1e-55 218.0 200 62.0
Dinv27050 Davidia involucrata HOM05D004104 ORTHO05D004755 1.1e-54 216.9 157 71.3
Cc06_g07960 Coffea canephora HOM05D004104 ORTHO05D004755 1.9e-54 216.1 155 75.5
GSVIVG01027809001 Vitis vinifera HOM05D004104 ORTHO05D004755 2.5e-54 215.7 153 74.5
Rhsim01G0264300 Rhododendron simsii HOM05D004104 ORTHO05D004755 9.6e-54 213.8 155 74.2
Solyc09g072580.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 9.6e-54 213.8 155 72.9
Sopen09g028390 Solanum pennellii HOM05D004104 ORTHO05D004755 9.6e-54 213.8 155 72.9
PGSC0003DMG400010299 Solanum tuberosum HOM05D004104 ORTHO05D004755 9.6e-54 213.8 155 72.9
Aqoxy2G03638 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 1.6e-53 213.0 157 73.9
Sabra05G0172700 Salix brachista HOM05D004104 ORTHO05D004755 1.6e-53 213.0 223 55.6
Nitab4.5_0000470g0160 Nicotiana tabacum HOM05D004104 ORTHO05D004755 2.1e-53 212.6 155 72.3
Nitab4.5_0009483g0030 Nicotiana tabacum HOM05D004104 ORTHO05D004755 2.8e-53 212.2 155 72.3
Thecc.04G255000 Theobroma cacao HOM05D004104 ORTHO05D004755 4.8e-53 211.5 155 72.9
Atru.chr4.2063 Acer truncatum HOM05D004104 ORTHO05D004755 1.1e-52 210.3 159 68.6
EL10Ac5g10403 Beta vulgaris HOM05D004104 ORTHO05D004755 1.1e-52 210.3 154 70.1
Actinidia25786 Actinidia chinensis HOM05D004104 ORTHO05D004755 1.4e-52 209.9 159 72.3
HanXRQChr03g0091411 Helianthus annuus HOM05D004104 ORTHO05D004755 3.1e-52 208.8 152 70.4
AUR62011875 Chenopodium quinoa HOM05D004104 ORTHO05D004755 6.9e-52 207.6 154 69.5
Lsat_1_v5_gn_3_120420 Lactuca sativa HOM05D004104 ORTHO05D004755 6.9e-52 207.6 152 69.7
PSO357G0016 Papaver somniferum HOM05D004104 ORTHO05D004755 2.0e-51 206.1 157 70.7
COL.COLO4_15874 Corchorus olitorius HOM05D004104 ORTHO05D004755 3.4e-51 205.3 155 71.6
Duzib052G0511 Durio zibethinus HOM05D004104 ORTHO05D004755 3.4e-51 205.3 150 72.0
PSO170G1063 Papaver somniferum HOM05D004104 ORTHO05D004755 7.6e-51 204.1 157 70.1
Hund02913 Selenicereus undatus HOM05D004104 ORTHO05D004755 1.7e-50 203.0 159 67.3
CSS0037223 Camellia sinensis var. sinensis HOM05D004104 ORTHO05D004755 2.9e-50 202.2 158 69.6
ECA240G4332 Erigeron canadensis HOM05D004104 ORTHO05D004755 4.9e-50 201.4 152 67.8
SalBow4G1878 Salvia bowleyana HOM05D004104 ORTHO05D004755 6.4e-50 201.1 154 71.4
CDE04G2476 Ceratophyllum demersum HOM05D004104 ORTHO05D004755 1.1e-49 200.3 156 69.9
Gohir.A07G212800 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.4e-49 199.1 159 72.3
SEGI_09266 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 2.4e-49 199.1 151 69.5
arahy.Tifrunner.gnm1.ann1.2HR6HW Arachis hypogaea HOM05D004104 ORTHO05D004755 3.2e-49 198.7 185 62.2
MSTRG.21496 Avicennia marina HOM05D004104 ORTHO05D004755 4.2e-49 198.4 154 70.8
SGA_v2.0_scaffold138G35232 Striga asiatica HOM05D000374 ORTHO05D000238 9.3e-49 197.2 154 70.8
Aqoxy2G03648 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 1.2e-48 196.8 147 72.8
Gohir.D02G045400 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.2e-48 196.8 155 67.1
Gorai.005G050100 Gossypium raimondii HOM05D004104 ORTHO05D004755 1.2e-48 196.8 155 67.1
Migut.D00423 Erythranthe guttata HOM05D004104 ORTHO05D004755 1.6e-48 196.4 154 70.8
QL06p017873 Quercus lobata HOM05D004104 ORTHO05D004755 1.6e-48 196.4 157 67.5
SGA_v2.0_scaffold1G00613 Striga asiatica HOM05D004104 ORTHO05D004755 1.6e-48 196.4 153 69.3
Cc03_g05510 Coffea canephora HOM05D004104 ORTHO05D004755 6.0e-48 194.5 157 65.0
THA.LOC104822244 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 6.0e-48 194.5 155 68.4
Duzib151G0362 Durio zibethinus HOM05D004104 ORTHO05D004755 7.9e-48 194.1 155 67.7
Gohir.A02G039300 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.0e-47 193.7 155 66.5
MSTRG.18320 Avicennia marina HOM05D004104 ORTHO05D004755 3.0e-47 192.2 154 69.5
Ciclev10006103m.g Citrus clementina HOM05D004104 ORTHO05D004755 3.0e-47 192.2 152 65.8
Gorai.001G253400 Gossypium raimondii HOM05D004104 ORTHO05D004755 3.0e-47 192.2 167 68.9
TAR636G3439 Trochodendron aralioides HOM05D004104 ORTHO05D004755 3.9e-47 191.8 151 67.5
TWI18G1001 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 5.1e-47 191.4 159 67.3
HanXRQChr04g0112651 Helianthus annuus HOM05D004104 ORTHO05D004755 1.1e-46 190.3 155 65.8
SalBow3G2247 Salvia bowleyana HOM05D004104 ORTHO05D004755 2.5e-46 189.1 155 62.6
AT4G14385 Arabidopsis thaliana HOM05D004104 ORTHO05D004755 4.3e-46 188.3 156 66.7
Nitab4.5_0001005g0090 Nicotiana tabacum HOM05D004104 ORTHO05D004755 9.6e-46 187.2 152 65.1
AL7G41830 Arabidopsis lyrata HOM05D004104 ORTHO05D004755 1.6e-45 186.4 155 66.5
Migut.G00520 Erythranthe guttata HOM05D004104 ORTHO05D004755 1.6e-45 186.4 155 64.5
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 3.7e-45 185.3 155 69.0
Actinidia01846 Actinidia chinensis HOM05D004104 ORTHO05D004755 4.8e-45 184.9 152 61.8
Sopen09g033030 Solanum pennellii HOM05D004104 ORTHO05D004755 4.8e-45 184.9 152 65.1
Nitab4.5_0000044g0340 Nicotiana tabacum HOM05D004104 ORTHO05D004755 8.2e-45 184.1 152 64.5
THA.LOC104825277 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 8.2e-45 184.1 172 62.8
Aa31LG9G2930 Aethionema arabicum HOM05D004104 ORTHO05D004755 1.8e-44 183.0 156 64.1
MELO3C015732.2 Cucumis melo HOM05D004104 ORTHO05D004755 1.8e-44 183.0 270 45.2
Solyc09g090120.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 2.4e-44 182.6 152 64.5
Rhsim02G0037300 Rhododendron simsii HOM05D004104 ORTHO05D004755 3.1e-44 182.2 157 58.6
Os01g0233400 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 6.9e-44 181.0 145 69.0
Os12g0298600 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 6.9e-44 181.0 145 69.0
TAR365G1233 Trochodendron aralioides HOM05D004104 ORTHO05D004755 6.9e-44 181.0 152 65.8
Nn3g19649 Nelumbo nucifera HOM05D004104 ORTHO05D004755 9.0e-44 180.6 123 76.4
A04p07650 Brassica napus HOM05D004104 ORTHO05D004755 1.2e-43 180.3 182 57.7
Lsat_1_v5_gn_8_92980 Lactuca sativa HOM05D004104 ORTHO05D004755 1.0e-42 177.2 156 64.7
Manes.03G164300 Manihot esculenta HOM05D004104 ORTHO05D004755 6.5e-42 174.5 125 71.2
THA.LOC104825278 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 1.1e-41 173.7 93 93.5
vmacro15441 Vaccinium macrocarpon HOM05D004104 ORTHO05D004755 2.5e-41 172.6 158 57.0
Pp3c8_15220 Physcomitrium patens HOM05D004104 ORTHO05D004755 3.5e-40 168.7 152 61.2
Hund11888 Selenicereus undatus HOM05D004104 ORTHO05D004755 2.3e-39 166.0 133 68.4
MSTRG.9892 Avicennia marina HOM05D004104 ORTHO05D004755 3.0e-39 165.6 141 62.4
Manes.13G033700 Manihot esculenta HOM05D004104 ORTHO05D004755 3.0e-39 165.6 97 86.6
BcaC02g09319 Brassica carinata HOM05D004104 ORTHO05D004755 5.1e-39 164.9 152 59.9
C04p41340 Brassica napus HOM05D004104 ORTHO05D004755 5.1e-39 164.9 152 59.9
BraA04t16456Z Brassica rapa HOM05D004104 ORTHO05D004755 5.1e-39 164.9 152 59.9
Mapoly0055s0054 Marchantia polymorpha HOM05D004104 ORTHO05D004755 8.7e-39 164.1 156 60.3
CARHR220610 Cardamine hirsuta HOM05D004104 ORTHO05D004755 1.1e-38 163.7 153 58.8
Thhalv10026437m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 1.1e-38 163.7 153 59.5
Peaxi162Scf00855g00233 Petunia axillaris HOM05D004104 ORTHO05D004755 1.9e-38 162.9 166 58.4
BolC4t25712H Brassica oleracea HOM05D004104 ORTHO05D004755 3.3e-38 162.2 112 73.2
ECA236G2125 Erigeron canadensis HOM05D004104 ORTHO05D004755 3.3e-38 162.2 159 59.1
unitig_21.g20174 Utricularia gibba HOM05D004104 ORTHO05D004755 3.3e-38 162.2 150 60.0
Sp7g12470 Schrenkiella parvula HOM05D004104 ORTHO05D004755 5.7e-38 161.4 153 58.8
Lj1A66T60 Lonicera japonica HOM05D004104 ORTHO05D004755 9.7e-38 160.6 157 56.7
Carub.0007s2785 Capsella rubella HOM05D004104 ORTHO05D004755 1.6e-37 159.8 153 56.9
Pp3c24_15450 Physcomitrium patens HOM05D004104 ORTHO05D004755 1.6e-37 159.8 152 58.6
Duzib138G1233 Durio zibethinus HOM05D004104 ORTHO05D004755 3.7e-37 158.7 156 61.5
Ah.11g049720 Amaranthus hybridus HOM05D004104 ORTHO05D004755 4.8e-37 158.3 115 69.6
BcaB02g08611 Brassica carinata HOM05D004104 ORTHO05D004755 4.8e-37 158.3 154 59.1
HPP92_004791 Vanilla planifolia HOM05D004104 ORTHO05D004755 6.3e-37 157.9 121 68.6
Gohir.D07G218900 Gossypium hirsutum HOM05D004104 ORTHO05D004755 8.2e-37 157.5 95 87.4
Sc24g0003130 Simmondsia chinensis HOM05D004104 ORTHO05D004755 4.1e-36 155.2 93 81.7
CBR_g31961 Chara braunii HOM05D004104 ORTHO05D004755 2.0e-35 152.9 150 57.3
SEGI_16929 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 3.4e-35 152.1 98 78.6
AagrBONN_evm.TU.Sc2ySwM_228.2514 Anthoceros agrestis HOM05D004104 ORTHO05D004755 1.3e-34 150.2 143 58.0
HPP92_008311 Vanilla planifolia HOM05D004104 ORTHO05D004755 1.7e-34 149.8 154 52.6
AagrBONN_evm.TU.Sc2ySwM_368.1944 Anthoceros agrestis HOM05D004104 ORTHO05D004755 1.1e-33 147.1 142 58.5
Dinv34620 Davidia involucrata HOM05D004104 ORTHO05D004755 1.9e-33 146.4 161 56.5
MBI10_g37181_MAGBIO Magnolia biondii HOM05D004104 ORTHO05D004755 1.2e-32 143.7 122 65.6
Ah.13g072460 Amaranthus hybridus HOM05D004104 ORTHO05D004755 1.6e-32 143.3 119 65.5
Dinv29861 Davidia involucrata HOM05D004104 ORTHO05D004755 7.9e-32 141.0 96 72.9
AUR62002135 Chenopodium quinoa HOM05D004104 ORTHO05D004755 1.8e-31 139.8 178 49.4
SGA_v2.0_scaffold67G22747 Striga asiatica HOM05D004104 ORTHO05D004755 1.8e-31 139.8 155 51.6
Oeu011497.1 Olea europaea HOM05D004104 ORTHO05D004755 2.3e-31 139.4 102 68.6
Actinidia32304 Actinidia chinensis HOM05D004104 ORTHO05D004755 3.0e-31 139.0 126 58.7
AUR62015575 Chenopodium quinoa HOM05D004104 ORTHO05D004755 2.2e-26 122.9 94 67.0
EL10Ac3g05008 Beta vulgaris HOM05D004104 ORTHO05D004755 6.5e-26 121.3 143 51.0
Ah.04g155820 Amaranthus hybridus HOM05D004104 ORTHO05D004755 8.5e-26 120.9 92 66.3
PGSC0003DMG400017224 Solanum tuberosum HOM05D004104 ORTHO05D004755 8.5e-26 120.9 170 46.5
Peaxi162Scf00543g00310 Petunia axillaris HOM05D004104 ORTHO05D004755 1.4e-25 120.2 143 51.7
CAN.G896.9 Capsicum annuum HOM05D004104 ORTHO05D004755 5.7e-22 108.2 85 70.6
CAN.G2012.3 Capsicum annuum HOM05D004104 ORTHO05D004755 3.7e-21 105.5 87 67.8
MCO10G151 Micromonas commoda HOM05D004104 ORTHO05D004755 1.0e-18 97.4 71 66.2
Thhalv10002280m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 1.7e-18 96.7 89 62.9
PRCOL_00002727 Prasinoderma coloniale HOM05D004104 ORTHO05D004755 3.2e-17 92.4 83 53.0
Thhalv10029502m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 5.5e-17 91.7 89 58.4
Zm00001eb188390 Zea mays HOM05D004104 ORTHO05D004755 1.2e-16 90.5 61 73.8
THA.LOC104825261 Tarenaya hassleriana HOM05D013951 ORTHO05D021024 2.3e-15 86.3 88 55.7
arahy.Tifrunner.gnm1.ann1.A8QM82 Arachis hypogaea HOM05D004104 ORTHO05D004755 2.4e-12 76.3 46 76.1
Gohir.D03G080833 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.0e-11 73.2 58 60.3
Gorai.003G083000 Gossypium raimondii HOM05D004104 ORTHO05D004755 7.7e-11 71.2 58 60.3
Actinidia11346 Actinidia chinensis HOM05D004104 ORTHO05D004755 1.7e-10 70.1 66 51.5
Cre06.g291200 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 1.1e-09 67.4 86 45.3
SHI09794 Sapria himalayana HOM05D004104 ORTHO05D004755 3.2e-09 65.9 41 78.0
Aqoxy2G03647 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 5.5e-09 65.1 93 44.1
Cc01_g11500 Coffea canephora HOM05D004104 ORTHO05D004755 5.5e-09 65.1 62 61.3
DCAR_012546 Daucus carota HOM05D004104 ORTHO05D004755 1.4e-07 60.5 92 47.8
Cre07.g328450 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 3.0e-07 59.3 76 43.4
QL09p049090 Quercus lobata HOM05D005758 ORTHO05D007218 9.7e-06 54.3 36 75.0


User provided reference genes

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