Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc50.15 Carica papaya HOM05D005109 ORTHO05D006084 4.8e-206 721.1 404 100.0
Ciclev10024128m.g Citrus clementina HOM05D005109 ORTHO05D006084 3.0e-99 366.3 404 55.0
Thecc.01G257200 Theobroma cacao HOM05D005109 ORTHO05D006084 5.1e-99 365.5 385 59.5
Gorai.004G221100 Gossypium raimondii HOM05D005109 ORTHO05D006084 2.5e-98 363.2 386 56.2
Gohir.D08G208700 Gossypium hirsutum HOM05D005109 ORTHO05D006084 5.7e-98 362.1 386 56.5
Gohir.A08G190200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 1.6e-97 360.5 386 55.4
Dinv34633 Davidia involucrata HOM05D005109 ORTHO05D006084 8.5e-94 348.2 392 54.8
Duzib211G0434 Durio zibethinus HOM05D005109 ORTHO05D006084 2.1e-92 343.6 376 58.5
Potri.002G037800 Populus trichocarpa HOM05D005109 ORTHO05D006084 1.0e-91 341.3 388 57.0
GSVIVG01028346001 Vitis vinifera HOM05D005109 ORTHO05D006084 3.9e-91 339.3 395 54.7
Sabra02G0030500 Salix brachista HOM05D005109 ORTHO05D006084 6.7e-91 338.6 406 53.0
Duzib133G1173 Durio zibethinus HOM05D005109 ORTHO05D006084 8.8e-91 338.2 381 54.3
Eucgr.G01947 Eucalyptus grandis HOM05D005109 ORTHO05D006084 4.3e-90 335.9 384 54.7
QL09p039103 Quercus lobata HOM05D005109 ORTHO05D006084 4.3e-90 335.9 398 54.5
Eucgr.B01549 Eucalyptus grandis HOM05D005109 ORTHO05D006084 1.7e-89 334.0 384 54.7
Manes.13G034800 Manihot esculenta HOM05D005109 ORTHO05D006084 4.8e-89 332.4 396 52.5
Duzib138G0302 Durio zibethinus HOM05D005109 ORTHO05D006084 6.3e-89 332.0 381 56.2
CANSAT01G1854 Cannabis sativa HOM05D005109 ORTHO05D006084 2.5e-85 320.1 401 52.4
Haze_24641 Corylus avellana HOM05D005109 ORTHO05D006084 2.5e-85 320.1 417 50.8
COL.COLO4_03875 Corchorus olitorius HOM05D005109 ORTHO05D006084 7.2e-85 318.5 393 52.7
CiPaw.03G265200 Carya illinoinensis HOM05D005109 ORTHO05D006084 2.7e-84 316.6 397 52.4
Manes.12G033000 Manihot esculenta HOM05D005109 ORTHO05D006084 7.9e-84 315.1 396 51.0
Gorai.007G146600 Gossypium raimondii HOM05D005109 ORTHO05D006084 8.8e-83 311.6 382 52.4
Prupe.8G222600 Prunus persica HOM05D005109 ORTHO05D006084 2.2e-81 307.0 386 51.6
Cfa002435 Carpinus fangiana HOM05D005109 ORTHO05D006084 4.8e-81 305.8 406 50.2
Gohir.A11G131200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 1.4e-80 304.3 382 51.3
Gohir.D11G136900 Gossypium hirsutum HOM05D005109 ORTHO05D006084 1.8e-80 303.9 382 51.8
RcHm_v2.0_Chr6g0287941 Rosa chinensis HOM05D005109 ORTHO05D006084 3.1e-80 303.1 409 50.1
Sabra05G0173800 Salix brachista HOM05D005109 ORTHO05D006084 5.3e-80 302.4 389 51.4
CSS0032892 Camellia sinensis var. sinensis HOM05D005109 ORTHO05D006084 9.1e-80 301.6 396 49.0
MD10G1183500 Malus domestica HOM05D005109 ORTHO05D006084 1.1e-77 294.7 405 50.1
Cc01_g18260 Coffea canephora HOM05D005109 ORTHO05D006084 3.2e-77 293.1 391 48.6
MD05G1196200 Malus domestica HOM05D005109 ORTHO05D006084 4.2e-77 292.7 404 49.3
Oeu063313.1 Olea europaea HOM05D005109 ORTHO05D006084 4.2e-77 292.7 389 49.1
ClCG07G001090 Citrullus lanatus HOM05D005109 ORTHO05D006084 2.7e-76 290.0 405 50.1
TWI18G0717 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 2.7e-76 290.0 382 50.0
Hma1.2p1_0273F.1_g109610 Hydrangea macrophylla HOM05D005109 ORTHO05D006084 6.1e-76 288.9 396 47.0
TWI12G1013 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 3.0e-75 286.6 393 52.2
FAN15G3301 Fragaria x ananassa HOM05D005109 ORTHO05D006084 3.9e-75 286.2 400 47.8
THA.LOC104826217 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 2.0e-74 283.9 397 48.1
MBI10_g20266_MAGBIO Magnolia biondii HOM05D005109 ORTHO05D006084 5.7e-74 282.3 390 49.5
FAN20G2708 Fragaria x ananassa HOM05D005109 ORTHO05D006084 7.4e-74 282.0 384 49.7
FvH4_2g21350 Fragaria vesca HOM05D005109 ORTHO05D006084 3.7e-73 279.6 392 50.8
Aa31LG5G5770 Aethionema arabicum HOM05D005109 ORTHO05D006084 6.3e-73 278.9 400 50.8
EL10As5g23493 Beta vulgaris HOM05D005109 ORTHO05D006084 1.1e-72 278.1 399 48.4
Potri.005G225200 Populus trichocarpa HOM05D005109 ORTHO05D006084 1.1e-72 278.1 387 47.8
Nn1g02784 Nelumbo nucifera HOM05D005109 ORTHO05D006084 1.8e-72 277.3 384 51.0
Sp1g05000 Schrenkiella parvula HOM05D005109 ORTHO05D006084 3.5e-71 273.1 394 51.0
CsaV3_3G022220 Cucumis sativus L. HOM05D005109 ORTHO05D006084 4.5e-71 272.7 400 47.8
Carub.0001s0555 Capsella rubella HOM05D005109 ORTHO05D006084 1.3e-70 271.2 421 48.5
Migut.D00430 Erythranthe guttata HOM05D005109 ORTHO05D006084 1.3e-70 271.2 399 45.6
Sed0018169 Sechium edule HOM05D005109 ORTHO05D006084 1.7e-70 270.8 394 49.2
FAN24G2940 Fragaria x ananassa HOM05D005109 ORTHO05D006084 2.2e-70 270.4 392 50.0
Phvul.007G192400 Phaseolus vulgaris HOM05D005109 ORTHO05D006084 2.9e-70 270.0 392 44.6
PSO210G5198 Papaver somniferum HOM05D005109 ORTHO05D006084 6.5e-70 268.9 367 50.7
AT1G06190 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 8.5e-70 268.5 401 47.4
Glyma.10G037400 Glycine max HOM05D005109 ORTHO05D006084 3.2e-69 266.5 389 45.2
CAN.G1147.5 Capsicum annuum HOM05D005109 ORTHO05D006084 4.2e-69 266.2 393 44.3
THA.LOC104800869 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 5.5e-69 265.8 394 49.5
Glyma.13G124000 Glycine max HOM05D005109 ORTHO05D006084 7.2e-69 265.4 387 45.7
PSO832G0134 Papaver somniferum HOM05D005109 ORTHO05D006084 7.2e-69 265.4 362 49.4
Lalb_Chr21g0313891 Lupinus albus HOM05D005109 ORTHO05D006084 2.7e-68 263.5 390 47.9
Nitab4.5_0000470g0030 Nicotiana tabacum HOM05D005109 ORTHO05D006084 6.1e-68 262.3 383 44.9
AL163U10030 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 1.0e-67 261.5 417 44.6
Peaxi162Scf01280g00016 Petunia axillaris HOM05D005109 ORTHO05D006084 1.8e-67 260.8 388 44.8
VMungo0720G0144 Vigna mungo HOM05D005109 ORTHO05D006084 2.3e-67 260.4 381 44.6
Sp4g13630 Schrenkiella parvula HOM05D005109 ORTHO05D006084 4.0e-67 259.6 401 48.9
Ah.11g049450 Amaranthus hybridus HOM05D005109 ORTHO05D006084 8.8e-67 258.5 384 46.4
MELO3C012881.2 Cucumis melo HOM05D005109 ORTHO05D006084 1.2e-66 258.1 396 47.0
DCAR_012551 Daucus carota HOM05D005109 ORTHO05D006084 1.5e-66 257.7 345 48.7
Sopen09g028260 Solanum pennellii HOM05D005109 ORTHO05D006084 2.0e-66 257.3 389 44.7
Lj5g0011614 Lotus japonicus HOM05D005109 ORTHO05D006084 2.6e-66 256.9 391 44.5
CARHR005720 Cardamine hirsuta HOM05D005109 ORTHO05D006084 4.4e-66 256.1 405 47.7
PGR031G1666 Punica granatum HOM05D005109 ORTHO05D006084 7.5e-66 255.4 391 45.0
HanXRQChr04g0110521 Helianthus annuus HOM05D005109 ORTHO05D006084 1.3e-65 254.6 389 45.0
TAR633G2233 Trochodendron aralioides HOM05D005109 ORTHO05D006084 1.3e-65 254.6 406 47.3
Atru.chr5.1705 Acer truncatum HOM05D005109 ORTHO05D006084 3.7e-65 253.1 407 44.2
MSTRG.17494 Avicennia marina HOM05D005109 ORTHO05D006084 6.3e-65 252.3 391 45.5
BcaC01g05971 Brassica carinata HOM05D005109 ORTHO05D006084 6.3e-65 252.3 397 46.9
C03p20590 Brassica napus HOM05D005109 ORTHO05D006084 6.3e-65 252.3 397 46.9
BolC3t14465H Brassica oleracea HOM05D005109 ORTHO05D006084 6.3e-65 252.3 397 46.9
PGSC0003DMG400010318 Solanum tuberosum HOM05D005109 ORTHO05D006084 8.2e-65 251.9 386 44.3
Aqoxy5G00221 Aquilegia oxysepala HOM05D005109 ORTHO05D006084 1.4e-64 251.1 393 47.8
arahy.Tifrunner.gnm1.ann1.ZTJ4VR Arachis hypogaea HOM05D005109 ORTHO05D006084 1.4e-64 251.1 393 47.3
SalBow4G0920 Salvia bowleyana HOM05D005109 ORTHO05D006084 2.4e-64 250.4 391 46.3
arahy.Tifrunner.gnm1.ann1.A1W3C7 Arachis hypogaea HOM05D005109 ORTHO05D006084 5.3e-64 249.2 393 47.1
AUR62011844 Chenopodium quinoa HOM05D005109 ORTHO05D006084 9.1e-64 248.4 365 46.3
Sed0014438 Sechium edule HOM05D005109 ORTHO05D006084 1.2e-63 248.1 412 45.1
A10p04820 Brassica napus HOM05D005109 ORTHO05D006084 1.7e-62 244.2 404 45.0
BraA10t42751Z Brassica rapa HOM05D005109 ORTHO05D006084 1.7e-62 244.2 404 45.0
CARHR124750 Cardamine hirsuta HOM05D005109 ORTHO05D006084 1.7e-62 244.2 379 48.8
Solyc09g025260.4 Solanum lycopersicum HOM05D005109 ORTHO05D006084 1.7e-62 244.2 387 44.4
Cpa.g.c44470 Carica papaya HOM05D005109 ORTHO05D006084 3.8e-62 243.0 154 100.0
Lalb_Chr06g0170501 Lupinus albus HOM05D005109 ORTHO05D006084 3.8e-62 243.0 449 43.9
Lalb_Chr02g0152441 Lupinus albus HOM05D005109 ORTHO05D006084 6.5e-62 242.3 403 42.9
ECA236G0222 Erigeron canadensis HOM05D005109 ORTHO05D006084 4.2e-61 239.6 402 42.3
Thhalv10016746m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 5.5e-61 239.2 395 47.6
BcaC05g24297 Brassica carinata HOM05D005109 ORTHO05D006084 2.1e-60 237.3 399 47.9
C05p04510 Brassica napus HOM05D005109 ORTHO05D006084 2.1e-60 237.3 399 47.9
Aa31LG1G7210 Aethionema arabicum HOM05D005109 ORTHO05D006084 1.0e-59 235.0 410 43.2
BcaB02g06816 Brassica carinata HOM05D005109 ORTHO05D006084 1.0e-59 235.0 406 46.6
BolC5t29222H Brassica oleracea HOM05D005109 ORTHO05D006084 1.0e-59 235.0 404 47.3
BcaC01g05975 Brassica carinata HOM05D005109 ORTHO05D006084 2.6e-58 230.3 399 46.1
C03p20550 Brassica napus HOM05D005109 ORTHO05D006084 2.6e-58 230.3 399 46.1
BolC3t14435H Brassica oleracea HOM05D005109 ORTHO05D006084 2.6e-58 230.3 399 46.1
Ca_28090_v3 Cicer arietinum L. HOM05D005109 ORTHO05D006084 3.4e-58 229.9 397 45.3
BcaB01g04060 Brassica carinata HOM05D005109 ORTHO05D006084 7.5e-58 228.8 391 47.1
Migut.N02209 Erythranthe guttata HOM05D005109 ORTHO05D006084 2.8e-57 226.9 398 41.0
Medtr1g069855 Medicago truncatula HOM05D005109 ORTHO05D006084 6.3e-57 225.7 388 42.8
Thhalv10007829m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 1.4e-56 224.6 394 46.4
Nitab4.5_0005001g0040 Nicotiana tabacum HOM05D005109 ORTHO05D006084 3.5e-55 219.9 315 45.4
A03p17410 Brassica napus HOM05D005109 ORTHO05D006084 1.7e-54 217.6 400 43.8
BraA03t11013Z Brassica rapa HOM05D005109 ORTHO05D006084 1.7e-54 217.6 400 43.8
Sc17g0000590 Simmondsia chinensis HOM05D005109 ORTHO05D006084 1.7e-54 217.6 444 37.6
TPR.G18473 Trifolium pratense HOM05D005109 ORTHO05D006084 2.3e-54 217.2 384 42.2
ATR0736G115 Amborella trichopoda HOM05D005109 ORTHO05D006084 3.8e-54 216.5 353 45.0
Actinidia09543 Actinidia chinensis HOM05D005109 ORTHO05D006084 8.6e-54 215.3 344 42.4
DCAR_018491 Daucus carota HOM05D005109 ORTHO05D006084 2.1e-52 210.7 373 42.1
AL4G26340 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 3.0e-51 206.8 414 40.1
Dinv33475 Davidia involucrata HOM05D005109 ORTHO05D006084 9.2e-48 195.3 172 64.5
unitig_8.g3734 Utricularia gibba HOM05D005109 ORTHO05D006084 2.0e-47 194.1 381 39.9
Rhsim13G0035600 Rhododendron simsii HOM05D005109 ORTHO05D006084 5.9e-47 192.6 415 36.4
Psat6g041760 Pisum sativum HOM05D005109 ORTHO05D006084 1.5e-45 188.0 383 41.3
COL.COLO4_04035 Corchorus olitorius HOM05D005109 ORTHO05D006084 9.5e-45 185.3 282 47.5
Actinidia07301 Actinidia chinensis HOM05D005109 ORTHO05D006084 1.2e-44 184.9 207 56.0
SGA_v2.0_scaffold1G00618 Striga asiatica HOM05D003989 ORTHO05D004626 3.6e-44 183.3 409 40.1
Cc05_g01680 Coffea canephora HOM05D005109 ORTHO05D006084 1.4e-43 181.4 178 61.2
AL1G16170 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 2.0e-42 177.6 399 40.4
Glyma.03G163800 Glycine max HOM05D005109 ORTHO05D006084 9.8e-42 175.3 389 39.8
SGA_v2.0_scaffold138G35226 Striga asiatica HOM05D003989 ORTHO05D004626 2.0e-39 167.5 379 39.1
vmacro02668 Vaccinium macrocarpon HOM05D005109 ORTHO05D006084 7.8e-39 165.6 355 37.5
Actinidia30161 Actinidia chinensis HOM05D005109 ORTHO05D006084 3.0e-38 163.7 264 45.8
Zm00001eb258380 Zea mays HOM05D005109 ORTHO05D006084 1.6e-36 157.9 350 36.3
Glyma.19G165100 Glycine max HOM05D005109 ORTHO05D006084 8.9e-35 152.1 388 33.8
AT2G31150 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 8.3e-33 145.6 224 46.4
Os03g0183100 Oryza sativa ssp. japonica HOM05D005109 ORTHO05D006084 9.2e-32 142.1 349 37.0
HPP92_012858 Vanilla planifolia HOM05D005109 ORTHO05D006084 6.6e-30 136.0 352 33.2
Psat0s1200g0040 Pisum sativum HOM05D005109 ORTHO05D006084 1.1e-29 135.2 258 40.3
Hund00596 Selenicereus undatus HOM05D005109 ORTHO05D006084 6.6e-22 109.4 190 43.2
Rhsim01G0262800 Rhododendron simsii HOM05D005109 ORTHO05D006084 1.6e-20 104.8 215 37.7
CDE02G3939 Ceratophyllum demersum HOM05D005109 ORTHO05D006084 2.6e-18 97.4 149 45.0
Lj1C67T4 Lonicera japonica HOM05D005109 ORTHO05D006084 7.8e-15 85.9 348 34.2
Actinidia37514 Actinidia chinensis HOM05D000378 ORTHO05D006084 2.7e-07 60.8 52 65.4


User provided reference genes

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