Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc5.59 Carica papaya HOM05D006439 ORTHO05D008152 0.0e+00 1830.5 938 100.0
CiPaw.09G010200 Carya illinoinensis HOM05D006439 ORTHO05D008152 1.9e-234 816.6 960 50.9
QL07p039851 Quercus lobata HOM05D006439 ORTHO05D008152 1.3e-233 813.9 957 50.6
Manes.08G022900 Manihot esculenta HOM05D006439 ORTHO05D008152 1.5e-226 790.4 963 49.7
MD12G1021400 Malus domestica HOM05D006439 ORTHO05D008152 2.6e-223 779.6 960 49.8
Gorai.007G371000 Gossypium raimondii HOM05D006439 ORTHO05D008152 3.8e-222 775.8 959 49.3
GSVIVG01033817001 Vitis vinifera HOM05D006439 ORTHO05D008152 1.1e-221 774.2 997 47.6
Prupe.7G115000 Prunus persica HOM05D006439 ORTHO05D008152 9.4e-221 771.2 957 49.7
Cfa016567 Carpinus fangiana HOM05D006439 ORTHO05D008152 2.1e-220 770.0 961 48.8
Hma1.2p1_0232F.1_g097640 Hydrangea macrophylla HOM05D006439 ORTHO05D008152 1.4e-219 767.3 961 48.0
Gohir.D11G340900 Gossypium hirsutum HOM05D006439 ORTHO05D008152 5.7e-218 761.9 951 49.0
TWI74G0883 Tripterygium wilfordii HOM05D006439 ORTHO05D008152 3.2e-213 746.1 960 47.3
Psat3g034720 Pisum sativum HOM05D006439 ORTHO05D008152 1.4e-211 740.7 964 46.3
Phvul.001G188000 Phaseolus vulgaris HOM05D006439 ORTHO05D008152 5.2e-211 738.8 960 46.2
Glyma.03G192900 Glycine max HOM05D006439 ORTHO05D008152 2.8e-209 733.0 959 46.5
Lalb_Chr01g0018261 Lupinus albus HOM05D006439 ORTHO05D008152 6.3e-209 731.9 959 45.8
TPR.G19544 Trifolium pratense HOM05D006439 ORTHO05D008152 1.8e-208 730.3 959 46.4
Haze_19565 Corylus avellana HOM05D006439 ORTHO05D008152 9.1e-208 728.0 1016 45.5
Lj1g0012097 Lotus japonicus HOM05D006439 ORTHO05D008152 2.0e-207 726.9 959 45.9
FAN02G3052 Fragaria x ananassa HOM05D006439 ORTHO05D008152 6.5e-206 721.8 1028 44.4
THA.LOC104823488 Tarenaya hassleriana HOM05D006439 ORTHO05D008152 1.0e-203 714.5 958 44.9
Gohir.A11G321900 Gossypium hirsutum HOM05D006439 ORTHO05D008152 2.3e-203 713.4 899 48.6
Medtr7g104170 Medicago truncatula HOM05D006439 ORTHO05D008152 4.8e-201 705.7 960 44.6
Duzib093G0471 Durio zibethinus HOM05D006439 ORTHO05D008152 2.7e-199 699.9 961 46.0
arahy.Tifrunner.gnm1.ann1.YQ8CLY Arachis hypogaea HOM05D006439 ORTHO05D008152 5.9e-199 698.7 985 44.2
arahy.Tifrunner.gnm1.ann1.JQB9X3 Arachis hypogaea HOM05D006439 ORTHO05D008152 2.0e-194 683.7 991 43.2
RcHm_v2.0_Chr3g0472491 Rosa chinensis HOM05D006439 ORTHO05D008152 1.8e-192 677.2 861 48.8
Ca_08981_v3 Cicer arietinum L. HOM05D006439 ORTHO05D008152 1.0e-190 671.4 898 45.3
FAN14G3294 Fragaria x ananassa HOM05D006439 ORTHO05D008152 2.3e-190 670.2 968 44.3
Migut.L01768 Erythranthe guttata HOM05D006439 ORTHO05D008152 4.3e-189 666.0 963 43.4
Sc07g0005420 Simmondsia chinensis HOM05D006439 ORTHO05D008152 5.7e-186 655.6 950 44.1
Nn2g14057 Nelumbo nucifera HOM05D006439 ORTHO05D008152 2.9e-185 653.3 959 43.2
BcaB06g28933 Brassica carinata HOM05D006439 ORTHO05D008152 1.0e-182 644.8 960 42.8
Thhalv10017885m.g Eutrema salsugineum HOM05D006439 ORTHO05D008152 1.0e-182 644.8 960 42.8
Sp4g18660 Schrenkiella parvula HOM05D006439 ORTHO05D008152 1.7e-182 644.0 897 43.8
AL4G32530 Arabidopsis lyrata HOM05D006439 ORTHO05D008152 9.5e-181 638.3 960 42.0
Sopen10g035010 Solanum pennellii HOM05D006439 ORTHO05D008152 9.5e-181 638.3 968 42.5
HanXRQChr09g0247281 Helianthus annuus HOM05D006439 ORTHO05D008152 2.1e-180 637.1 957 42.2
SGA_v2.0_scaffold184G39949 Striga asiatica HOM05D006439 ORTHO05D008152 2.3e-179 633.6 998 40.8
A04p27880 Brassica napus HOM05D006439 ORTHO05D008152 3.1e-179 633.3 957 41.7
CARHR130670 Cardamine hirsuta HOM05D006439 ORTHO05D008152 5.8e-178 629.0 959 42.2
BolC4t28018H Brassica oleracea HOM05D006439 ORTHO05D008152 4.9e-177 625.9 960 41.7
AT2G36370 Arabidopsis thaliana HOM05D006439 ORTHO05D008152 6.4e-177 625.5 959 41.2
EL10Ac7g16960 Beta vulgaris HOM05D006439 ORTHO05D008152 6.4e-177 625.5 971 42.1
Cc06_g05440 Coffea canephora HOM05D006439 ORTHO05D008152 6.4e-177 625.5 959 41.3
Solyc10g085600.2 Solanum lycopersicum HOM05D006439 ORTHO05D008152 1.1e-176 624.8 968 42.1
BcaC02g07604 Brassica carinata HOM05D006439 ORTHO05D008152 1.4e-176 624.4 958 41.3
BraA04t18280Z Brassica rapa HOM05D006439 ORTHO05D008152 1.4e-176 624.4 960 41.1
Thecc.05G084500 Theobroma cacao HOM05D006439 ORTHO05D008152 3.3e-173 613.2 741 50.7
ECA233G3232 Erigeron canadensis HOM05D006439 ORTHO05D008152 1.1e-171 608.2 965 40.1
Aa31LG5G21550 Aethionema arabicum HOM05D006439 ORTHO05D008152 6.8e-171 605.5 945 42.1
Lsat_1_v5_gn_6_69500 Lactuca sativa HOM05D006439 ORTHO05D008152 1.5e-170 604.4 971 41.2
PSO384G3820 Papaver somniferum HOM05D006439 ORTHO05D008152 3.4e-170 603.2 955 40.6
SalBow5G0766 Salvia bowleyana HOM05D006439 ORTHO05D008152 4.1e-160 569.7 908 40.2
VMungo1383G0775 Vigna mungo HOM05D006439 ORTHO05D008152 2.7e-159 567.0 757 45.3
Peaxi162Scf00146g00718 Petunia axillaris HOM05D006439 ORTHO05D008152 2.3e-158 563.9 911 40.5
PGR142G3529 Punica granatum HOM05D006439 ORTHO05D008152 1.5e-154 551.2 936 41.2
Actinidia31281 Actinidia chinensis HOM05D006439 ORTHO05D008152 9.3e-152 542.0 799 43.6
vmacro08831 Vaccinium macrocarpon HOM05D006439 ORTHO05D008152 3.4e-146 523.5 734 43.6
Oeu034357.1 Olea europaea HOM05D006439 ORTHO05D008152 1.1e-144 518.5 982 36.3
FvH4_6g18170 Fragaria vesca HOM05D006439 ORTHO05D008152 1.4e-144 518.1 954 36.9
AUR62028585 Chenopodium quinoa HOM05D006439 ORTHO05D008152 9.6e-141 505.4 818 40.8
Ah.15g091040 Amaranthus hybridus HOM05D006439 ORTHO05D008152 2.8e-140 503.8 905 38.3
CAN.G1099.9 Capsicum annuum HOM05D006439 ORTHO05D008152 1.2e-138 498.4 795 41.6
Aqoxy2G01352 Aquilegia oxysepala HOM05D006439 ORTHO05D008152 7.1e-136 489.2 767 40.8
Ciclev10011131m.g Citrus clementina HOM05D006439 ORTHO05D008152 1.0e-134 485.3 705 45.5
Atru.chr8.1601 Acer truncatum HOM05D006439 ORTHO05D008152 8.7e-134 482.3 419 61.1
Nitab4.5_0000381g0240 Nicotiana tabacum HOM05D006439 ORTHO05D008152 4.0e-131 473.4 737 41.1
HPP92_005462 Vanilla planifolia HOM05D006439 ORTHO05D008152 4.9e-129 466.5 963 34.1
Os01g0968600 Oryza sativa ssp. japonica HOM05D006439 ORTHO05D008152 1.1e-125 455.3 960 33.2
DCAR_009146 Daucus carota HOM05D006439 ORTHO05D008152 7.4e-117 426.0 959 33.7
TAR623G1631 Trochodendron aralioides HOM05D006439 ORTHO05D008152 9.7e-117 425.6 424 56.4
Carub.0004s1817 Capsella rubella HOM05D006439 ORTHO05D008152 7.7e-114 416.0 482 49.4
Rhsim04G0133900 Rhododendron simsii HOM05D006439 ORTHO05D008152 5.5e-112 409.8 377 56.8
PSO801G0048 Papaver somniferum HOM05D006439 ORTHO05D008152 8.2e-108 396.0 892 33.4
Dinv21235 Davidia involucrata HOM05D000103 ORTHO05D008152 1.8e-107 394.8 376 58.0
Atru.chr8.1600 Acer truncatum HOM05D006439 ORTHO05D008152 6.5e-105 386.3 389 55.3
CSS0038647 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 6.1e-103 379.8 320 61.2
MBI17_g23163_MAGBIO Magnolia biondii HOM05D006439 ORTHO05D008152 6.6e-81 306.6 403 45.7
Zm00001eb139990 Zea mays HOM05D006439 ORTHO05D008152 7.8e-74 283.1 672 33.0
QL11p044009 Quercus lobata HOM05D006439 ORTHO05D009270 1.0e-73 282.7 375 46.4
Lj3A1001T30 Lonicera japonica HOM05D006439 ORTHO05D008152 2.9e-73 281.2 248 60.1
Dinv21234 Davidia involucrata HOM05D006439 ORTHO05D008152 2.7e-66 258.1 318 47.2
Carub.0004s1816 Capsella rubella HOM05D006439 ORTHO05D008152 3.3e-56 224.6 308 42.9
Nitab4.5_0005447g0020 Nicotiana tabacum HOM05D006439 ORTHO05D008152 1.8e-54 218.8 332 41.0
Pp3c16_1040 Physcomitrium patens HOM05D006439 ORTHO05D008152 1.5e-53 215.7 976 25.9
Ciclev10013912m.g Citrus clementina HOM05D006439 ORTHO05D008152 5.8e-53 213.8 203 57.1
QL07p039868 Quercus lobata HOM05D006439 ORTHO05D008152 4.1e-51 207.6 228 51.3
PGSC0003DMG402008399 Solanum tuberosum HOM05D006439 ORTHO05D008152 1.4e-46 192.6 203 51.2
SEGI_26522 Sequoiadendron giganteum HOM05D006439 ORTHO05D000001 2.1e-42 178.7 220 43.6
Mapoly0116s0006 Marchantia polymorpha HOM05D006439 ORTHO05D008152 1.7e-41 175.6 977 23.8
Lj3A1001T29 Lonicera japonica HOM05D006439 ORTHO05D008152 7.3e-40 170.2 204 47.5
VMungo1127G2301 Vigna mungo HOM05D006439 ORTHO05D008152 1.3e-36 159.5 196 45.9
Lj3A1001G26 Lonicera japonica HOM05D006439 ORTHO05D008152 8.4e-36 156.8 209 41.6
SMO238G0046 Selaginella moellendorffii HOM05D006439 ORTHO05D008152 7.1e-35 153.7 747 25.2
AagrBONN_evm.TU.Sc2ySwM_117.1948 Anthoceros agrestis HOM05D006439 ORTHO05D008152 9.3e-35 153.3 401 31.2
CAN.G1099.8 Capsicum annuum HOM05D006439 ORTHO05D008152 1.8e-30 139.0 160 47.5
Lj3A1001T31 Lonicera japonica HOM05D006439 ORTHO05D008152 4.0e-30 137.9 98 65.3
FAN09G3024 Fragaria x ananassa HOM05D006439 ORTHO05D008152 9.0e-30 136.7 165 46.1
CSS0030357 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 3.4e-29 134.8 172 48.8
Nitab4.5_0000381g0270 Nicotiana tabacum HOM05D006502 ORTHO05D007704 3.8e-28 131.3 156 48.1
AUR62028586 Chenopodium quinoa HOM05D006439 ORTHO05D008152 2.7e-26 125.2 97 64.9
VMungo1383G1144 Vigna mungo HOM05D006439 ORTHO05D008152 6.2e-23 114.0 130 46.9
SEGI_37059 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 6.9e-22 110.5 168 41.1
Thecc.10G111400 Theobroma cacao HOM05D006439 ORTHO05D008152 7.1e-19 100.5 75 62.7
RcHm_v2.0_Chr3g0472501 Rosa chinensis HOM05D006439 ORTHO05D008152 8.7e-17 93.6 91 50.5
SEGI_02684 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 1.5e-16 92.8 104 47.1
AUR62033535 Chenopodium quinoa HOM05D006439 ORTHO05D008152 1.8e-14 85.9 95 48.4
AL4G34560 Arabidopsis lyrata HOM05D006439 ORTHO05D008152 2.6e-13 82.0 116 42.2
CSS0035414 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 2.5e-11 75.5 97 41.2
Psat6g076200 Pisum sativum HOM05D006439 ORTHO05D008152 7.4e-08 63.9 47 57.4
CSS0045256 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 9.7e-08 63.5 49 65.3
SEGI_31112 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 9.7e-08 63.5 349 27.2
TAR623G0848 Trochodendron aralioides HOM05D006439 ORTHO05D008152 1.6e-07 62.8 47 61.7
ECA232G2349 Erigeron canadensis HOM05D006439 ORTHO05D008321 5.3e-06 57.8 66 42.4
AL4G34520 Arabidopsis lyrata HOM05D006439 ORTHO05D008152 6.9e-06 57.4 47 55.3
Aqoxy2G01351 Aquilegia oxysepala HOM05D006439 ORTHO05D008152 9.0e-06 57.0 73 38.4


User provided reference genes

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