Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc5.183 Carica papaya HOM05D003729 ORTHO05D004384 2.9e-114 415.2 207 100.0
THA.LOC104802558 Tarenaya hassleriana HOM05D003729 ORTHO05D004384 3.7e-77 292.0 255 62.4
Manes.15G116200 Manihot esculenta HOM05D003729 ORTHO05D004384 1.4e-76 290.0 256 61.7
C08p32320 Brassica napus HOM05D003729 ORTHO05D004384 5.3e-76 288.1 255 62.4
Aqoxy3G00221 Aquilegia oxysepala HOM05D003729 ORTHO05D004384 6.9e-76 287.7 255 61.6
Sp5g05590 Schrenkiella parvula HOM05D003729 ORTHO05D004384 6.9e-76 287.7 255 62.0
BcaC07g40019 Brassica carinata HOM05D003729 ORTHO05D004384 9.1e-76 287.3 255 62.4
BolC8t50846H Brassica oleracea HOM05D003729 ORTHO05D004384 9.1e-76 287.3 255 62.4
BraA09t40443Z Brassica rapa HOM05D003729 ORTHO05D004384 9.1e-76 287.3 255 62.0
A09p49920 Brassica napus HOM05D003729 ORTHO05D004384 1.2e-75 287.0 255 62.0
FAN24G0230 Fragaria x ananassa HOM05D003729 ORTHO05D004384 3.4e-75 285.4 207 71.0
RcHm_v2.0_Chr6g0270881 Rosa chinensis HOM05D003729 ORTHO05D004384 7.7e-75 284.3 256 61.3
Thhalv10005807m.g Eutrema salsugineum HOM05D003729 ORTHO05D004384 1.7e-74 283.1 255 61.6
Nitab4.5_0000381g0340 Nicotiana tabacum HOM05D003729 ORTHO05D004384 5.0e-74 281.6 256 60.5
Eucgr.B01227 Eucalyptus grandis HOM05D003729 ORTHO05D004384 6.5e-74 281.2 256 61.3
FvH4_2g11640 Fragaria vesca HOM05D003729 ORTHO05D004384 6.5e-74 281.2 256 60.9
Nitab4.5_0005447g0050 Nicotiana tabacum HOM05D003729 ORTHO05D004384 8.5e-74 280.8 256 60.5
Sopen10g034990 Solanum pennellii HOM05D003729 ORTHO05D004384 8.5e-74 280.8 256 59.8
GSVIVG01033615001 Vitis vinifera HOM05D003729 ORTHO05D004384 1.1e-73 280.4 256 60.5
Atru.chr11.1446 Acer truncatum HOM05D003729 ORTHO05D004384 1.9e-73 279.6 253 61.3
Atru.chr11.1476 Acer truncatum HOM05D003729 ORTHO05D004384 1.9e-73 279.6 253 61.3
Actinidia38159 Actinidia chinensis HOM05D003729 ORTHO05D004384 1.9e-73 279.6 256 59.0
Prupe.8G004300 Prunus persica HOM05D003729 ORTHO05D004384 1.9e-73 279.6 256 60.5
AL5G38440 Arabidopsis lyrata HOM05D003729 ORTHO05D004384 3.2e-73 278.9 255 60.4
CARHR167140 Cardamine hirsuta HOM05D003729 ORTHO05D004384 4.2e-73 278.5 255 60.4
CiPaw.09G047000 Carya illinoinensis HOM05D003729 ORTHO05D004384 5.5e-73 278.1 256 60.2
MD06G1011700 Malus domestica HOM05D003729 ORTHO05D004384 5.5e-73 278.1 256 59.8
CAN.G1099.5 Capsicum annuum HOM05D003729 ORTHO05D004384 7.2e-73 277.7 256 59.8
COL.COLO4_31341 Corchorus olitorius HOM05D003729 ORTHO05D004384 7.2e-73 277.7 256 59.8
Peaxi162Scf00146g00613 Petunia axillaris HOM05D003729 ORTHO05D004384 9.4e-73 277.3 256 59.4
AT3G56990 Arabidopsis thaliana HOM05D003729 ORTHO05D004384 2.1e-72 276.2 255 60.0
Prupe.5G014500 Prunus persica HOM05D003729 ORTHO05D004384 3.6e-72 275.4 256 59.4
TAR629G1039 Trochodendron aralioides HOM05D003729 ORTHO05D004384 3.6e-72 275.4 256 60.2
Aa31LG10G11890 Aethionema arabicum HOM05D003729 ORTHO05D004384 4.7e-72 275.0 255 58.8
PGR031G2313 Punica granatum HOM05D003729 ORTHO05D004384 1.8e-71 273.1 256 58.6
Rhsim04G0111000 Rhododendron simsii HOM05D003729 ORTHO05D004384 2.3e-71 272.7 256 58.2
Gohir.A11G307900 Gossypium hirsutum HOM05D003729 ORTHO05D004384 3.9e-71 271.9 256 58.2
CSS0000349 Camellia sinensis var. sinensis HOM05D003729 ORTHO05D004384 5.2e-71 271.6 256 57.8
A07p23200 Brassica napus HOM05D003729 ORTHO05D004384 6.7e-71 271.2 251 59.4
BraA07t29984Z Brassica rapa HOM05D003729 ORTHO05D004384 6.7e-71 271.2 251 59.4
Ciclev10027979m.g Citrus clementina HOM05D003729 ORTHO05D004384 6.7e-71 271.2 253 59.3
Gohir.D11G323300 Gossypium hirsutum HOM05D003729 ORTHO05D004384 6.7e-71 271.2 256 58.2
Gorai.007G353300 Gossypium raimondii HOM05D003729 ORTHO05D004384 6.7e-71 271.2 256 58.2
Dinv26813 Davidia involucrata HOM05D003729 ORTHO05D004384 1.1e-70 270.4 256 58.6
Duzib106G1244 Durio zibethinus HOM05D003729 ORTHO05D004384 2.0e-70 269.6 256 57.8
Hma1.2p1_0402F.1_g145090 Hydrangea macrophylla HOM05D003729 ORTHO05D004384 2.6e-70 269.2 256 59.0
HanXRQChr12g0359771 Helianthus annuus HOM05D003729 ORTHO05D004384 1.3e-69 266.9 256 58.6
QL06p031735 Quercus lobata HOM05D003729 ORTHO05D004384 2.2e-69 266.2 256 57.4
Carub.0005s2373 Capsella rubella HOM05D003729 ORTHO05D004384 2.8e-69 265.8 255 58.4
Sc13g0001200 Simmondsia chinensis HOM05D003729 ORTHO05D004384 3.7e-69 265.4 256 58.6
BcaC08g44817 Brassica carinata HOM05D003729 ORTHO05D004384 4.8e-69 265.0 255 57.3
Lsat_1_v5_gn_5_75341 Lactuca sativa HOM05D003729 ORTHO05D004384 6.3e-69 264.6 256 57.8
BcaB02g07627 Brassica carinata HOM05D003729 ORTHO05D004384 8.2e-69 264.2 261 57.5
HanXRQChr10g0311271 Helianthus annuus HOM05D003729 ORTHO05D004384 1.4e-68 263.5 258 57.4
Dinv34365 Davidia involucrata HOM05D003729 ORTHO05D004384 2.4e-68 262.7 256 57.8
SGA_v2.0_scaffold149G36565 Striga asiatica HOM05D003729 ORTHO05D004384 2.4e-68 262.7 255 55.3
BolC6t37563H Brassica oleracea HOM05D003729 ORTHO05D004384 3.1e-68 262.3 255 56.9
arahy.Tifrunner.gnm1.ann1.UC9EW5 Arachis hypogaea HOM05D003729 ORTHO05D004384 4.1e-68 261.9 256 57.0
Migut.N03364 Erythranthe guttata HOM05D003729 ORTHO05D004384 4.1e-68 261.9 256 56.6
Cfa020012 Carpinus fangiana HOM05D003729 ORTHO05D004384 5.3e-68 261.5 256 56.6
C06p24040 Brassica napus HOM05D003729 ORTHO05D004384 7.0e-68 261.2 280 53.9
vmacro09025 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 9.1e-68 260.8 266 54.9
Cc06_g19080 Coffea canephora HOM05D003729 ORTHO05D004384 1.6e-67 260.0 257 58.0
EL10Ac3g07219 Beta vulgaris HOM05D003729 ORTHO05D004384 2.0e-67 259.6 256 57.8
AUR62003735 Chenopodium quinoa HOM05D003729 ORTHO05D004384 3.5e-67 258.8 256 57.8
Ca_11233_v3 Cicer arietinum L. HOM05D003729 ORTHO05D004384 4.5e-67 258.5 256 55.9
Psat5g246840 Pisum sativum HOM05D003729 ORTHO05D004384 4.5e-67 258.5 256 56.2
ECA234G1736 Erigeron canadensis HOM05D003729 ORTHO05D004384 1.7e-66 256.5 256 56.6
Glyma.09G171000 Glycine max HOM05D003729 ORTHO05D004384 1.7e-66 256.5 257 56.4
Phvul.004G146700 Phaseolus vulgaris HOM05D003729 ORTHO05D004384 1.7e-66 256.5 256 55.1
Glyma.07G106900 Glycine max HOM05D003729 ORTHO05D004384 2.2e-66 256.1 257 56.0
Lj6g0002169 Lotus japonicus HOM05D003729 ORTHO05D004384 2.2e-66 256.1 256 55.9
ATR0757G154 Amborella trichopoda HOM05D003729 ORTHO05D004384 3.8e-66 255.4 255 54.9
VMungo0464G0714 Vigna mungo HOM05D003729 ORTHO05D004384 3.8e-66 255.4 256 55.5
AUR62023904 Chenopodium quinoa HOM05D003729 ORTHO05D004384 6.5e-66 254.6 256 57.0
Medtr2g081080 Medicago truncatula HOM05D003729 ORTHO05D004384 1.9e-65 253.1 256 55.5
Nn7g37723 Nelumbo nucifera HOM05D003729 ORTHO05D004384 4.2e-65 251.9 253 56.1
PSO782G2431 Papaver somniferum HOM05D003729 ORTHO05D004384 5.5e-65 251.5 255 52.5
PSO478G2512 Papaver somniferum HOM05D003729 ORTHO05D004384 7.2e-65 251.1 255 52.5
ClCG09G015010 Citrullus lanatus HOM05D003729 ORTHO05D004384 6.1e-64 248.1 257 54.1
Lalb_Chr06g0173631 Lupinus albus HOM05D003729 ORTHO05D004384 8.0e-64 247.7 256 55.1
CsaV3_7G006250 Cucumis sativus L. HOM05D003729 ORTHO05D004384 1.4e-63 246.9 257 54.1
Sed0006249 Sechium edule HOM05D003729 ORTHO05D004384 5.2e-63 245.0 257 52.9
DCAR_013638 Daucus carota HOM05D003729 ORTHO05D004384 8.8e-63 244.2 252 54.0
MELO3C018665.2 Cucumis melo HOM05D003729 ORTHO05D004384 1.2e-62 243.8 257 53.3
Lj1g0021267 Lotus japonicus HOM05D003729 ORTHO05D004384 5.7e-62 241.5 256 53.9
Potri.016G037400 Populus trichocarpa HOM05D003729 ORTHO05D004384 5.7e-62 241.5 256 53.5
Ah.04g151040 Amaranthus hybridus HOM05D003729 ORTHO05D004384 1.7e-61 240.0 256 55.5
unitig_27.g24938 Utricularia gibba HOM05D003729 ORTHO05D004384 3.7e-61 238.8 257 52.9
Os06g0128400 Oryza sativa ssp. japonica HOM05D003729 ORTHO05D004384 8.2e-61 237.7 248 52.0
Sabra16G0039300 Salix brachista HOM05D003729 ORTHO05D004384 8.2e-61 237.7 290 49.7
Sabra16G0044200 Salix brachista HOM05D003729 ORTHO05D004384 8.2e-61 237.7 290 49.7
Thecc.05G137800 Theobroma cacao HOM05D003729 ORTHO05D004384 7.7e-59 231.1 223 57.0
Zm00001eb373800 Zea mays HOM05D003729 ORTHO05D004384 2.2e-58 229.6 255 50.2
MBI04_g42401_MAGBIO Magnolia biondii HOM05D003729 ORTHO05D004384 2.9e-58 229.2 230 54.8
HPP92_002023 Vanilla planifolia HOM05D003729 ORTHO05D004384 2.9e-58 229.2 248 50.4
TPR.G32867 Trifolium pratense HOM05D003729 ORTHO05D004384 6.5e-58 228.0 209 60.3
CANSAT64G1452 Cannabis sativa HOM05D003729 ORTHO05D004384 8.0e-56 221.1 254 50.0
Lj1A1094G13 Lonicera japonica HOM05D003729 ORTHO05D004384 4.0e-55 218.8 252 50.8
MSTRG.19814 Avicennia marina HOM05D003729 ORTHO05D004384 2.0e-51 206.5 210 55.7
Mapoly0009s0077 Marchantia polymorpha HOM05D003729 ORTHO05D004384 2.0e-51 206.5 248 43.5
BcaC07g40088 Brassica carinata HOM05D003729 ORTHO05D004384 7.7e-51 204.5 257 49.0
Pp3c18_60 Physcomitrium patens HOM05D003729 ORTHO05D004384 1.7e-50 203.4 248 44.8
arahy.Tifrunner.gnm1.ann1.HP2N24 Arachis hypogaea HOM05D003729 ORTHO05D004384 5.0e-50 201.8 114 84.2
SMO334G0073 Selaginella moellendorffii HOM05D003729 ORTHO05D004384 5.5e-49 198.4 254 41.3
AagrBONN_evm.TU.Sc2ySwM_228.5647 Anthoceros agrestis HOM05D003729 ORTHO05D004384 2.1e-48 196.4 248 44.0
Thecc.05G137700 Theobroma cacao HOM05D003729 ORTHO05D004384 2.1e-48 196.4 227 51.5
FAN15G2573 Fragaria x ananassa HOM05D003729 ORTHO05D004384 3.6e-48 195.7 207 55.1
SEGI_35907 Sequoiadendron giganteum HOM05D003729 ORTHO05D004384 5.6e-41 171.8 113 69.9
Zm00001eb378550 Zea mays HOM05D003729 ORTHO05D004384 8.0e-40 167.9 111 72.1
AUR62016564 Chenopodium quinoa HOM05D003729 ORTHO05D004384 1.5e-38 163.7 115 71.3
vmacro10989 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 1.2e-35 154.1 212 44.3
CBR_g12410 Chara braunii HOM05D003729 ORTHO05D004384 4.6e-35 152.1 248 37.1
Cpa.g.sc1212.1 Carica papaya HOM05D003729 ORTHO05D004384 5.6e-33 145.2 78 92.3
Cre03.g159950 Chlamydomonas reinhardtii HOM05D003729 ORTHO05D004384 6.2e-32 141.7 248 33.9
Thecc.05G137400 Theobroma cacao HOM05D003729 ORTHO05D004384 5.8e-30 135.2 198 41.9
Atru.chr1.117 Acer truncatum HOM05D003729 ORTHO05D004384 4.1e-28 129.0 168 47.0
arahy.Tifrunner.gnm1.ann1.7FD8QN Arachis hypogaea HOM05D003729 ORTHO05D004384 1.0e-26 124.4 158 51.3
SHI40172 Sapria himalayana HOM05D003729 ORTHO05D004384 2.5e-25 119.8 85 71.8
MCO06G073 Micromonas commoda HOM05D003729 ORTHO05D004384 4.3e-25 119.0 251 30.7
Glyma.03G135700 Glycine max HOM05D003729 ORTHO05D004384 4.0e-23 112.5 159 42.1
SHI42965 Sapria himalayana HOM05D003729 ORTHO05D004384 5.2e-23 112.1 84 70.2
Sabra16G0029600 Salix brachista HOM05D000075 ORTHO05D000073 1.1e-20 104.4 85 64.7
Haze_16231 Corylus avellana HOM05D003729 ORTHO05D004384 2.4e-20 103.2 63 74.6
PRCOL_00000752 Prasinoderma coloniale HOM05D003729 ORTHO05D004384 1.7e-18 97.1 269 28.6
Haze_16233 Corylus avellana HOM05D003729 ORTHO05D004384 8.6e-18 94.7 79 64.6
QL07p009838 Quercus lobata HOM05D003729 ORTHO05D004384 2.8e-16 89.7 78 62.8
Sabra16G0022500 Salix brachista HOM05D000075 ORTHO05D000073 2.6e-14 83.2 57 75.4
SHI43747 Sapria himalayana HOM05D003729 ORTHO05D004384 2.2e-13 80.1 64 64.1
Sabra16G0039200 Salix brachista HOM05D002722 ORTHO05D003076 3.8e-13 79.3 77 57.1
Rhsim06G0100100 Rhododendron simsii HOM05D003729 ORTHO05D004384 8.4e-13 78.2 49 73.5
QL01p046327 Quercus lobata HOM05D003729 ORTHO05D004384 3.2e-12 76.3 62 64.5
QL93p0119_0007 Quercus lobata HOM05D003729 ORTHO05D004384 3.2e-12 76.3 62 64.5
SHI45339 Sapria himalayana HOM05D003729 ORTHO05D004384 3.5e-11 72.8 76 52.6
Sabra16G0044400 Salix brachista HOM05D002722 ORTHO05D003076 5.6e-09 65.5 77 50.6
SHI46293 Sapria himalayana HOM05D003729 ORTHO05D004384 2.4e-07 60.1 31 77.4


User provided reference genes

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