Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc49.18 Carica papaya HOM05D003792 ORTHO05D003195 2.9e-111 405.2 202 100.0
Dinv35957 Davidia involucrata HOM05D003792 ORTHO05D003195 2.1e-40 169.9 197 49.7
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 1.0e-39 167.5 187 49.7
Potri.014G029000 Populus trichocarpa HOM05D003792 ORTHO05D003195 1.0e-39 167.5 199 47.2
RcHm_v2.0_Chr6g0307971 Rosa chinensis HOM05D003792 ORTHO05D003195 5.1e-39 165.2 194 47.4
Prupe.1G435100 Prunus persica HOM05D003792 ORTHO05D003195 1.1e-38 164.1 189 47.1
CSS0021091 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 4.3e-38 162.2 197 45.2
Potri.002G125900 Populus trichocarpa HOM05D003792 ORTHO05D003195 4.8e-37 158.7 199 47.2
GSVIVG01009490001 Vitis vinifera HOM05D003792 ORTHO05D003195 3.1e-36 156.0 199 42.2
FAN15G1261 Fragaria x ananassa HOM05D003792 ORTHO05D003195 4.0e-36 155.6 193 46.1
FvH4_2g34400 Fragaria vesca HOM05D003792 ORTHO05D003195 6.9e-36 154.8 193 45.6
Duzib116G0066 Durio zibethinus HOM05D003792 ORTHO05D003195 9.0e-36 154.5 199 46.2
Manes.18G037600 Manihot esculenta HOM05D003792 ORTHO05D003195 2.0e-35 153.3 193 46.1
TAR628G0921 Trochodendron aralioides HOM05D003792 ORTHO05D003195 2.0e-35 153.3 191 44.5
COL.COLO4_26514 Corchorus olitorius HOM05D003792 ORTHO05D003195 2.6e-35 152.9 199 45.7
TWI36G1706 Tripterygium wilfordii HOM05D003792 ORTHO05D003195 2.6e-35 152.9 197 46.2
Thecc.08G006700 Theobroma cacao HOM05D003792 ORTHO05D003195 1.3e-34 150.6 201 44.8
Sabra14G0019900 Salix brachista HOM05D003792 ORTHO05D003195 1.7e-34 150.2 194 45.4
TAR381G1051 Trochodendron aralioides HOM05D003792 ORTHO05D003195 2.2e-34 149.8 199 44.2
CiPaw.16G043500 Carya illinoinensis HOM05D003792 ORTHO05D003195 2.9e-34 149.4 188 45.2
Actinidia23277 Actinidia chinensis HOM05D003792 ORTHO05D003195 6.4e-34 148.3 188 44.7
Cfa018558 Carpinus fangiana HOM05D000207 ORTHO05D000606 1.4e-33 147.1 200 43.5
Duzib093G2220 Durio zibethinus HOM05D003792 ORTHO05D003195 1.4e-33 147.1 199 44.2
MD15G1082300 Malus domestica HOM05D003792 ORTHO05D003195 1.4e-33 147.1 197 44.7
Actinidia22631 Actinidia chinensis HOM05D003792 ORTHO05D003195 1.9e-33 146.7 197 43.1
TAR376G0615 Trochodendron aralioides HOM05D003792 ORTHO05D003195 2.4e-33 146.4 195 43.6
MD08G1101100 Malus domestica HOM05D003792 ORTHO05D003195 5.4e-33 145.2 195 42.6
TWI36G0999 Tripterygium wilfordii HOM05D003792 ORTHO05D003195 3.5e-32 142.5 199 44.2
Gohir.D05G205900 Gossypium hirsutum HOM05D003792 ORTHO05D003195 3.9e-31 139.0 187 44.9
Gorai.009G212200 Gossypium raimondii HOM05D003792 ORTHO05D003195 1.9e-30 136.7 187 44.4
Eucgr.F00223 Eucalyptus grandis HOM05D003792 ORTHO05D003195 4.3e-30 135.6 194 42.3
QL02p004753 Quercus lobata HOM05D003792 ORTHO05D003195 9.6e-30 134.4 175 44.0
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 3.6e-29 132.5 207 39.6
Gohir.A05G202700 Gossypium hirsutum HOM05D003792 ORTHO05D003195 4.8e-29 132.1 187 44.4
Aa31LG9G12960 Aethionema arabicum HOM05D003792 ORTHO05D003195 1.8e-28 130.2 202 42.6
Gohir.A06G018700 Gossypium hirsutum HOM05D003792 ORTHO05D003195 4.0e-28 129.0 201 41.8
Aqoxy6G01313 Aquilegia oxysepala HOM05D003792 ORTHO05D003195 9.0e-28 127.9 195 39.5
CiPaw.15G055900 Carya illinoinensis HOM05D003792 ORTHO05D003195 9.0e-28 127.9 197 40.1
DCAR_019451 Daucus carota HOM05D003792 ORTHO05D003195 9.0e-28 127.9 190 41.1
Gorai.010G020000 Gossypium raimondii HOM05D003792 ORTHO05D003195 1.2e-27 127.5 198 42.9
Gohir.D06G017100 Gossypium hirsutum HOM05D003792 ORTHO05D003195 1.5e-27 127.1 195 42.6
VMungo0647G0635 Vigna mungo HOM05D003792 ORTHO05D003195 4.5e-27 125.6 190 36.3
Rhsim06G0050200 Rhododendron simsii HOM05D003792 ORTHO05D003195 1.7e-26 123.6 188 39.9
Glyma.17G242100 Glycine max HOM05D003792 ORTHO05D003195 2.9e-26 122.9 182 37.9
GSVIVG01024176001 Vitis vinifera HOM05D003792 ORTHO05D003195 2.9e-26 122.9 175 44.6
Ciclev10002531m.g Citrus clementina HOM05D003792 ORTHO05D003195 3.2e-25 119.4 191 39.3
vmacro21518 Vaccinium macrocarpon HOM05D003792 ORTHO05D003195 3.2e-25 119.4 180 40.0
Glyma.14G083000 Glycine max HOM05D003792 ORTHO05D003195 4.2e-25 119.0 182 37.9
Nitab4.5_0002760g0070 Nicotiana tabacum HOM05D003792 ORTHO05D003195 4.2e-25 119.0 186 41.4
Phvul.001G022200 Phaseolus vulgaris HOM05D003792 ORTHO05D003195 4.2e-25 119.0 184 38.0
PGSC0003DMG402007970 Solanum tuberosum HOM05D003792 ORTHO05D003195 5.4e-25 118.6 182 39.0
PSO210G6487 Papaver somniferum HOM05D003792 ORTHO05D003195 7.1e-25 118.2 190 42.6
Sopen04g032480 Solanum pennellii HOM05D003792 ORTHO05D003195 9.3e-25 117.9 182 39.6
MSTRG.24332 Avicennia marina HOM05D003792 ORTHO05D003195 1.6e-24 117.1 189 39.2
PGR031G0673 Punica granatum HOM05D003792 ORTHO05D003195 1.6e-24 117.1 185 38.9
Solyc04g078880.3 Solanum lycopersicum HOM05D003792 ORTHO05D003195 1.6e-24 117.1 181 39.8
Nitab4.5_0000287g0270 Nicotiana tabacum HOM05D003792 ORTHO05D003195 2.7e-24 116.3 196 39.3
Dinv42162 Davidia involucrata HOM05D003792 ORTHO05D003195 3.5e-24 115.9 174 42.5
Medtr1g019360 Medicago truncatula HOM05D003792 ORTHO05D003195 3.5e-24 115.9 193 36.8
Dinv15716 Davidia involucrata HOM05D003792 ORTHO05D003195 6.0e-24 115.2 195 39.5
Haze_17521 Corylus avellana HOM05D000207 ORTHO05D000606 1.3e-23 114.0 199 37.7
Nn5g30305 Nelumbo nucifera HOM05D003792 ORTHO05D003195 5.1e-23 112.1 200 36.5
Sp2g07640 Schrenkiella parvula HOM05D003792 ORTHO05D003195 2.5e-22 109.8 206 41.3
SpUn0117_0010 Schrenkiella parvula HOM05D003792 ORTHO05D003195 2.5e-22 109.8 206 41.3
Gohir.A01G120000 Gossypium hirsutum HOM05D003792 ORTHO05D003195 3.3e-22 109.4 197 40.6
Sabra02G0098600 Salix brachista HOM05D000207 ORTHO05D003195 5.6e-22 108.6 230 34.8
Peaxi162Scf00252g00410 Petunia axillaris HOM05D003792 ORTHO05D003195 7.4e-22 108.2 189 37.0
THA.LOC104812575 Tarenaya hassleriana HOM05D003792 ORTHO05D003195 7.4e-22 108.2 197 39.6
Rhsim07G0228200 Rhododendron simsii HOM05D003792 ORTHO05D003195 9.6e-22 107.8 239 33.9
BcaC02g10794 Brassica carinata HOM05D003792 ORTHO05D003195 1.3e-21 107.5 198 40.9
Lsat_1_v5_gn_4_125741 Lactuca sativa HOM05D003792 ORTHO05D003195 1.3e-21 107.5 181 38.7
AL8G18050 Arabidopsis lyrata HOM05D003792 ORTHO05D003195 1.6e-21 107.1 201 38.8
Carub.0008s0601 Capsella rubella HOM05D003792 ORTHO05D003195 1.6e-21 107.1 202 39.6
Lalb_Chr14g0368651 Lupinus albus HOM05D003792 ORTHO05D003195 2.1e-21 106.7 188 33.5
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 2.8e-21 106.3 189 37.0
MELO3C016754.2 Cucumis melo HOM05D003792 ORTHO05D003195 2.8e-21 106.3 185 37.8
TPR.G3791 Trifolium pratense HOM05D003792 ORTHO05D003195 4.8e-21 105.5 185 35.7
AT5G42900 Arabidopsis thaliana HOM05D003792 ORTHO05D003195 6.2e-21 105.1 202 38.6
Gohir.D01G108300 Gossypium hirsutum HOM05D003792 ORTHO05D003195 1.4e-20 104.0 179 40.2
arahy.Tifrunner.gnm1.ann1.ND8QY1 Arachis hypogaea HOM05D003792 ORTHO05D003195 3.1e-20 102.8 190 35.8
arahy.Tifrunner.gnm1.ann1.V1SQNE Arachis hypogaea HOM05D003792 ORTHO05D003195 3.1e-20 102.8 190 35.8
C04p25040 Brassica napus HOM05D003792 ORTHO05D003195 3.1e-20 102.8 199 40.7
BolC4t24005H Brassica oleracea HOM05D003792 ORTHO05D003195 3.1e-20 102.8 199 40.7
Thhalv10003264m.g Eutrema salsugineum HOM05D003792 ORTHO05D003195 4.0e-20 102.4 208 38.0
THA.LOC104822850 Tarenaya hassleriana HOM05D003792 ORTHO05D003195 5.3e-20 102.1 182 36.3
Nn1g04847 Nelumbo nucifera HOM05D003792 ORTHO05D003195 6.9e-20 101.7 190 36.3
CsaV3_4G034340 Cucumis sativus L. HOM05D003792 ORTHO05D003195 9.0e-20 101.3 187 36.4
Sed0003020 Sechium edule HOM05D003792 ORTHO05D003195 1.5e-19 100.5 197 34.5
Gorai.002G132500 Gossypium raimondii HOM05D003792 ORTHO05D003195 2.0e-19 100.1 179 39.1
A06p48190 Brassica napus HOM05D003792 ORTHO05D003195 4.5e-19 99.0 205 39.5
BraA06t27688Z Brassica rapa HOM05D003792 ORTHO05D003195 4.5e-19 99.0 205 39.5
Migut.N02709 Erythranthe guttata HOM05D003792 ORTHO05D003195 4.5e-19 99.0 179 36.9
PGR083G2840 Punica granatum HOM05D003792 ORTHO05D003195 4.5e-19 99.0 101 51.5
GSVIVG01031734001 Vitis vinifera HOM05D003792 ORTHO05D003195 4.5e-19 99.0 194 34.0
Lj5g0016368 Lotus japonicus HOM05D003792 ORTHO05D003195 5.8e-19 98.6 182 35.2
ECA232G3551 Erigeron canadensis HOM05D003792 ORTHO05D003195 1.0e-18 97.8 103 48.5
Sc02g0007160 Simmondsia chinensis HOM05D003792 ORTHO05D003195 2.9e-18 96.3 198 35.4
QL11p035325 Quercus lobata HOM05D003792 ORTHO05D003195 1.1e-17 94.4 182 36.3
Lalb_Chr22g0355111 Lupinus albus HOM05D003792 ORTHO05D003195 1.9e-17 93.6 171 33.3
CDE04G2954 Ceratophyllum demersum HOM05D000925 ORTHO05D002746 3.2e-17 92.8 195 32.8
Cc10_g04110 Coffea canephora HOM05D003792 ORTHO05D003195 3.2e-17 92.8 184 34.8
CANSAT25G2784 Cannabis sativa HOM05D003792 ORTHO05D003195 5.5e-17 92.0 186 37.1
Lsat_1_v5_gn_6_111920 Lactuca sativa HOM05D003792 ORTHO05D003195 7.1e-17 91.7 106 42.5
Oeu012963.1 Olea europaea HOM05D003792 ORTHO05D003195 1.2e-16 90.9 191 32.5
CANSAT25G3506 Cannabis sativa HOM05D003792 ORTHO05D003195 1.6e-16 90.5 182 36.8
MSTRG.25091 Avicennia marina HOM05D003792 ORTHO05D003195 6.0e-16 88.6 179 33.0
Hund23000 Selenicereus undatus HOM05D003792 ORTHO05D003195 7.9e-16 88.2 132 37.1
BolC9t55450H Brassica oleracea HOM05D003792 ORTHO05D003195 2.3e-15 86.7 205 35.1
THA.LOC104814167 Tarenaya hassleriana HOM05D003792 ORTHO05D003195 2.3e-15 86.7 186 37.6
ECA246G0047 Erigeron canadensis HOM05D003792 ORTHO05D003195 3.0e-15 86.3 187 31.6
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 6.7e-15 85.1 201 31.8
Haze_10092 Corylus avellana HOM05D003792 ORTHO05D003195 8.7e-15 84.7 186 36.0
Psat6g012520 Pisum sativum HOM05D003792 ORTHO05D003195 1.1e-14 84.3 192 31.2
CARHR181240 Cardamine hirsuta HOM05D003792 ORTHO05D003195 1.5e-14 84.0 195 36.4
CDE08G1351 Ceratophyllum demersum HOM05D003792 ORTHO05D003195 1.9e-14 83.6 90 42.2
HanXRQChr09g0267581 Helianthus annuus HOM05D003792 ORTHO05D003195 1.9e-14 83.6 104 41.3
MBI03_g13463_MAGBIO Magnolia biondii HOM05D003792 ORTHO05D003195 1.9e-14 83.6 190 33.2
BcaB07g31033 Brassica carinata HOM05D003792 ORTHO05D003195 2.5e-14 83.2 181 35.9
SalBow7G2289 Salvia bowleyana HOM05D003792 ORTHO05D003195 2.5e-14 83.2 197 29.4
HanXRQChr05g0150801 Helianthus annuus HOM05D003792 ORTHO05D003195 3.3e-14 82.8 98 43.9
Prupe.8G126300 Prunus persica HOM05D003792 ORTHO05D003195 4.3e-14 82.4 136 37.5
CSS0036112 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 5.7e-14 82.0 187 35.3
HanXRQChr14g0439641 Helianthus annuus HOM05D003792 ORTHO05D003195 5.7e-14 82.0 101 48.5
Cpa.g.sc62.6 Carica papaya HOM05D003792 ORTHO05D003195 9.6e-14 81.3 238 30.7
MD05G1081700 Malus domestica HOM05D003792 ORTHO05D003195 1.3e-13 80.9 172 34.9
Gorai.008G024800 Gossypium raimondii HOM05D003792 ORTHO05D003195 2.8e-13 79.7 195 32.8
CSS0015140 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 3.7e-13 79.3 176 32.4
Gohir.D12G024500 Gossypium hirsutum HOM05D003792 ORTHO05D003195 3.7e-13 79.3 195 32.3
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 3.7e-13 79.3 189 33.9
Actinidia00436 Actinidia chinensis HOM05D003792 ORTHO05D003195 6.2e-13 78.6 172 34.9
BcaC06g31740 Brassica carinata HOM05D003792 ORTHO05D003195 8.2e-13 78.2 196 35.7
Ah.11g043080 Amaranthus hybridus HOM05D003792 ORTHO05D003195 1.4e-12 77.4 102 43.1
Gohir.A12G023800 Gossypium hirsutum HOM05D003792 ORTHO05D003195 1.8e-12 77.0 105 39.0
Thecc.02G101400 Theobroma cacao HOM05D003792 ORTHO05D003195 1.8e-12 77.0 190 31.6
A09p20080 Brassica napus HOM05D003792 ORTHO05D003195 4.1e-12 75.9 206 33.5
BraA09t37621Z Brassica rapa HOM05D003792 ORTHO05D003195 4.1e-12 75.9 206 33.5
Duzib248G0608 Durio zibethinus HOM05D003792 ORTHO05D003195 1.5e-11 73.9 195 30.3
Oeu049982.1 Olea europaea HOM05D003792 ORTHO05D003195 3.4e-11 72.8 174 31.6
Manes.10G080100 Manihot esculenta HOM05D003792 ORTHO05D003195 4.5e-11 72.4 110 42.7
Atru.chr5.2692 Acer truncatum HOM05D003792 ORTHO05D003195 1.3e-10 70.9 182 35.7
Ciclev10029147m.g Citrus clementina HOM05D003792 ORTHO05D003195 2.2e-10 70.1 183 32.8
Lj5C209G18 Lonicera japonica HOM05D003792 ORTHO05D003195 2.9e-10 69.7 159 33.3
EL10As7g23733 Beta vulgaris HOM05D003792 ORTHO05D003195 3.8e-10 69.3 189 32.8
THA.LOC104819577 Tarenaya hassleriana HOM05D009953 ORTHO05D003195 1.9e-09 67.0 188 30.3
Aqoxy5G01231 Aquilegia oxysepala HOM05D003792 ORTHO05D003195 2.5e-09 66.6 181 33.1
Sabra09G0077200 Salix brachista HOM05D003792 ORTHO05D003195 2.5e-09 66.6 182 36.8
Aa31LG2G16400 Aethionema arabicum HOM05D009953 ORTHO05D003195 3.2e-09 66.2 187 31.0
Zm00001eb006310 Zea mays HOM05D003792 ORTHO05D003195 3.2e-09 66.2 181 30.4
C09p25480 Brassica napus HOM05D003792 ORTHO05D003195 4.2e-09 65.9 202 32.7
CiPaw.05G007500 Carya illinoinensis HOM05D003792 ORTHO05D003195 4.2e-09 65.9 109 36.7
vmacro02043 Vaccinium macrocarpon HOM05D003792 ORTHO05D003195 9.3e-09 64.7 125 35.2
BcaC04g21959 Brassica carinata HOM05D003792 ORTHO05D003195 1.6e-08 63.9 202 32.2
vmacro04447 Vaccinium macrocarpon HOM05D003792 ORTHO05D003195 1.6e-08 63.9 72 47.2
Potri.009G101400 Populus trichocarpa HOM05D003792 ORTHO05D003195 2.1e-08 63.5 175 34.9
Oeu025580.1 Olea europaea HOM05D003792 ORTHO05D003195 2.7e-08 63.2 101 36.6
SEGI_08793 Sequoiadendron giganteum HOM05D019663 ORTHO05D003195 3.5e-08 62.8 210 26.2
ClCG02G005970 Citrullus lanatus HOM05D003792 ORTHO05D003195 6.1e-08 62.0 176 29.5
MELO3C018454.2 Cucumis melo HOM05D003792 ORTHO05D003195 7.9e-08 61.6 195 29.2
SGA_v2.0_scaffold14G07003 Striga asiatica HOM05D000207 ORTHO05D000606 1.0e-07 61.2 85 40.0
Carub.0007s0642 Capsella rubella HOM05D009953 ORTHO05D003195 1.8e-07 60.5 96 38.5
Os03g0184100 Oryza sativa ssp. japonica HOM05D003792 ORTHO05D003195 2.3e-07 60.1 207 27.1
AL7G17410 Arabidopsis lyrata HOM05D009953 ORTHO05D003195 3.0e-07 59.7 93 36.6
COL.COLO4_32649 Corchorus olitorius HOM05D003465 ORTHO05D004034 3.9e-07 59.3 117 31.6
SEGI_40396 Sequoiadendron giganteum HOM05D003792 ORTHO05D003195 3.9e-07 59.3 126 31.7
SGA_v2.0_scaffold32G13060 Striga asiatica HOM05D003792 ORTHO05D003195 3.9e-07 59.3 170 30.0
Potri.004G140701 Populus trichocarpa HOM05D003792 ORTHO05D003195 5.1e-07 58.9 187 34.2
AT4G33980 Arabidopsis thaliana HOM05D009953 ORTHO05D003195 6.7e-07 58.5 70 44.3
MSTRG.20159 Avicennia marina HOM05D011234 ORTHO05D003195 6.7e-07 58.5 180 32.2
C07p60100 Brassica napus HOM05D009953 ORTHO05D003195 6.7e-07 58.5 82 41.5
BolC7t46450H Brassica oleracea HOM05D009953 ORTHO05D003195 6.7e-07 58.5 82 41.5
CARHR242110 Cardamine hirsuta HOM05D009953 ORTHO05D003195 8.7e-07 58.2 210 27.6
CDE10G0229 Ceratophyllum demersum HOM05D000955 ORTHO05D003340 1.5e-06 57.4 185 28.6
FAN20G1193 Fragaria x ananassa HOM05D025254 ORTHO05D003195 1.5e-06 57.4 183 31.1
Oeu007289.1 Olea europaea HOM05D011234 ORTHO05D003195 1.5e-06 57.4 116 31.9
BcaB03g11864 Brassica carinata HOM05D009953 ORTHO05D003195 1.9e-06 57.0 89 39.3
Cc02_g18840 Coffea canephora HOM05D011234 ORTHO05D003195 1.9e-06 57.0 174 27.6
FAN27G2730 Fragaria x ananassa HOM05D025254 ORTHO05D003195 1.9e-06 57.0 183 31.1
Sp7g31720 Schrenkiella parvula HOM05D009953 ORTHO05D003195 2.5e-06 56.6 93 37.6
Migut.C00575 Erythranthe guttata HOM05D003792 ORTHO05D003195 3.3e-06 56.2 181 30.4
PSO170G6463 Papaver somniferum HOM05D003792 ORTHO05D003195 3.3e-06 56.2 198 30.3
FAN15G2062 Fragaria x ananassa HOM05D025254 ORTHO05D003195 4.3e-06 55.8 183 30.6
Rhsim11G0165200 Rhododendron simsii HOM05D003792 ORTHO05D003195 4.3e-06 55.8 172 32.6
FvH4_2g05920 Fragaria vesca HOM05D025254 ORTHO05D003195 7.4e-06 55.1 183 30.6
PGR042G0828 Punica granatum HOM05D003792 ORTHO05D003195 7.4e-06 55.1 187 30.5
Gohir.D01G007300 Gossypium hirsutum HOM05D003792 ORTHO05D003195 9.7e-06 54.7 176 31.2


User provided reference genes

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