Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc48.76 Carica papaya HOM05D007200 ORTHO05D009030 8.7e-162 573.5 284 100.0
Ciclev10002020m.g Citrus clementina HOM05D007200 ORTHO05D009030 6.3e-112 407.9 291 69.8
TAR365G0308 Trochodendron aralioides HOM05D007200 ORTHO05D009030 2.6e-105 386.0 292 66.1
Manes.08G119500 Manihot esculenta HOM05D007200 ORTHO05D009030 7.5e-105 384.4 289 67.8
QL03p012758 Quercus lobata HOM05D007200 ORTHO05D009030 1.7e-104 383.3 291 64.9
TAR365G0906 Trochodendron aralioides HOM05D007200 ORTHO05D009030 2.2e-104 382.9 292 65.8
GSVIVG01031113001 Vitis vinifera HOM05D007200 ORTHO05D009030 2.4e-103 379.4 272 70.6
CANSAT54G2021 Cannabis sativa HOM05D007200 ORTHO05D009030 4.5e-102 375.2 291 64.3
Glyma.10G153100 Glycine max HOM05D007200 ORTHO05D009030 5.9e-102 374.8 287 66.6
TWI12G0470 Tripterygium wilfordii HOM05D007200 ORTHO05D009030 7.7e-102 374.4 288 63.9
Prupe.6G323000 Prunus persica HOM05D007200 ORTHO05D009030 2.9e-101 372.5 281 66.2
Gohir.A11G266300 Gossypium hirsutum HOM05D007200 ORTHO05D009030 3.8e-101 372.1 289 67.1
Sabra05G0032400 Salix brachista HOM05D007200 ORTHO05D009030 5.0e-101 371.7 289 65.7
Haze_04164 Corylus avellana HOM05D007200 ORTHO05D009030 1.1e-100 370.5 282 64.9
Atru.chr12.1493 Acer truncatum HOM05D007200 ORTHO05D009030 1.9e-100 369.8 291 66.0
Gohir.D11G276600 Gossypium hirsutum HOM05D007200 ORTHO05D009030 1.9e-100 369.8 289 67.1
Duzib177G0869 Durio zibethinus HOM05D007200 ORTHO05D009030 2.5e-100 369.4 293 65.9
Thecc.05G310900 Theobroma cacao HOM05D007200 ORTHO05D009030 3.3e-100 369.0 293 65.5
Gorai.007G298700 Gossypium raimondii HOM05D007200 ORTHO05D009030 9.5e-100 367.5 289 66.4
Cfa006611 Carpinus fangiana HOM05D007200 ORTHO05D009030 2.1e-99 366.3 280 63.9
VMungo0720G1786 Vigna mungo HOM05D007200 ORTHO05D009030 1.8e-98 363.2 252 71.4
RcHm_v2.0_Chr3g0455321 Rosa chinensis HOM05D007200 ORTHO05D009030 3.0e-98 362.5 292 64.4
Lj9C128T5 Lonicera japonica HOM05D007200 ORTHO05D009030 5.2e-98 361.7 259 69.1
Phvul.007G196200 Phaseolus vulgaris HOM05D007200 ORTHO05D009030 6.8e-98 361.3 250 71.2
Nn3g21404 Nelumbo nucifera HOM05D007200 ORTHO05D009030 1.2e-97 360.5 298 63.1
Eucgr.B01933 Eucalyptus grandis HOM05D007200 ORTHO05D009030 1.5e-97 360.1 288 63.9
Aqoxy5G00700 Aquilegia oxysepala HOM05D007200 ORTHO05D009030 1.3e-96 357.1 292 61.0
Actinidia24645 Actinidia chinensis HOM05D007200 ORTHO05D009030 1.7e-96 356.7 290 63.8
FvH4_6g06280 Fragaria vesca HOM05D007200 ORTHO05D009030 4.9e-96 355.1 294 63.3
FAN14G1797 Fragaria x ananassa HOM05D007200 ORTHO05D009030 1.8e-95 353.2 294 62.9
arahy.Tifrunner.gnm1.ann1.PH9A9F Arachis hypogaea HOM05D007200 ORTHO05D009030 2.4e-95 352.8 247 71.3
Lalb_Chr21g0310651 Lupinus albus HOM05D007200 ORTHO05D009030 4.1e-95 352.1 281 65.8
Medtr1g083110 Medicago truncatula HOM05D007200 ORTHO05D009030 7.0e-95 351.3 274 67.2
Psat6g149880 Pisum sativum HOM05D007200 ORTHO05D009030 1.2e-94 350.5 252 71.4
TPR.G6036 Trifolium pratense HOM05D007200 ORTHO05D009030 1.2e-94 350.5 252 71.0
arahy.Tifrunner.gnm1.ann1.H2XQXC Arachis hypogaea HOM05D007200 ORTHO05D009030 1.6e-94 350.1 247 70.9
Lj9C124T9 Lonicera japonica HOM05D007200 ORTHO05D009030 2.0e-94 349.7 283 63.3
Rhsim05G0141700 Rhododendron simsii HOM05D007200 ORTHO05D009030 2.0e-94 349.7 269 67.3
CSS0011307 Camellia sinensis var. sinensis HOM05D007200 ORTHO05D009030 4.6e-94 348.6 277 65.0
CsaV3_2G006520 Cucumis sativus L. HOM05D007200 ORTHO05D009030 5.9e-94 348.2 290 62.4
COL.COLO4_10491 Corchorus olitorius HOM05D007200 ORTHO05D009030 1.0e-93 347.4 253 70.4
FAN09G0829 Fragaria x ananassa HOM05D007200 ORTHO05D009030 1.3e-93 347.1 294 61.2
Nitab4.5_0002420g0030 Nicotiana tabacum HOM05D007200 ORTHO05D009030 1.5e-92 343.6 290 60.3
CARHR079750 Cardamine hirsuta HOM05D007200 ORTHO05D009030 1.9e-92 343.2 294 61.6
Sed0020284 Sechium edule HOM05D007200 ORTHO05D009030 2.5e-92 342.8 290 60.7
MD12G1216700 Malus domestica HOM05D007200 ORTHO05D009030 9.5e-92 340.9 292 59.2
PGR083G0889 Punica granatum HOM05D007200 ORTHO05D009030 9.5e-92 340.9 253 67.2
AUR62005175 Chenopodium quinoa HOM05D007200 ORTHO05D009030 1.2e-91 340.5 290 60.7
CiPaw.07G020000 Carya illinoinensis HOM05D007200 ORTHO05D009030 1.6e-91 340.1 271 63.5
AUR62000793 Chenopodium quinoa HOM05D007200 ORTHO05D009030 8.0e-91 337.8 291 60.5
THA.LOC104818708 Tarenaya hassleriana HOM05D007200 ORTHO05D009030 8.0e-91 337.8 293 62.1
AL3G15960 Arabidopsis lyrata HOM05D007200 ORTHO05D009030 1.4e-90 337.0 293 60.8
Aa31LG5G15970 Aethionema arabicum HOM05D007200 ORTHO05D009030 2.3e-90 336.3 293 60.1
Lsat_1_v5_gn_9_87521 Lactuca sativa HOM05D007200 ORTHO05D009030 2.3e-90 336.3 254 66.1
AT3G05410 Arabidopsis thaliana HOM05D007200 ORTHO05D009030 4.0e-90 335.5 252 66.3
Peaxi162Scf00071g00636 Petunia axillaris HOM05D007200 ORTHO05D009030 4.0e-90 335.5 292 59.9
MELO3C004233.2 Cucumis melo HOM05D007200 ORTHO05D009030 5.2e-90 335.1 293 59.7
Lj5g0005198 Lotus japonicus HOM05D007200 ORTHO05D009030 1.2e-89 334.0 273 64.1
Sp3g04270 Schrenkiella parvula HOM05D007200 ORTHO05D009030 1.2e-89 334.0 252 66.3
Thhalv10021289m.g Eutrema salsugineum HOM05D007200 ORTHO05D009030 2.0e-89 333.2 268 63.8
Carub.0003s0469 Capsella rubella HOM05D007200 ORTHO05D009030 3.4e-89 332.4 290 61.4
ECA236G3394 Erigeron canadensis HOM05D007200 ORTHO05D009030 9.8e-89 330.9 268 63.1
HanXRQChr11g0339441 Helianthus annuus HOM05D007200 ORTHO05D009030 1.7e-88 330.1 263 63.9
BolC5t34842H Brassica oleracea HOM05D007200 ORTHO05D000438 2.2e-88 329.7 252 64.7
BcaC05g30124 Brassica carinata HOM05D007200 ORTHO05D009030 8.3e-88 327.8 252 64.3
BcaC05g30148 Brassica carinata HOM05D007200 ORTHO05D009030 1.9e-87 326.6 268 62.7
vmacro19623 Vaccinium macrocarpon HOM05D007200 ORTHO05D009030 4.1e-87 325.5 264 64.4
BraA05t23030Z Brassica rapa HOM05D007200 ORTHO05D009030 9.2e-87 324.3 252 63.5
DCAR_001939 Daucus carota HOM05D007200 ORTHO05D009030 9.2e-87 324.3 267 60.7
EL10Ac4g09392 Beta vulgaris HOM05D007200 ORTHO05D009030 2.7e-86 322.8 291 58.1
PGSC0003DMG400007427 Solanum tuberosum HOM05D007200 ORTHO05D009030 3.5e-86 322.4 275 60.0
MBI19_g12813_MAGBIO Magnolia biondii HOM05D007200 ORTHO05D009030 1.7e-85 320.1 254 65.4
Zm00001eb142170 Zea mays HOM05D007200 ORTHO05D009030 1.7e-85 320.1 251 62.2
Ah.04g160430 Amaranthus hybridus HOM05D007200 ORTHO05D009030 8.6e-85 317.8 269 60.2
CAN.G321.37 Capsicum annuum HOM05D007200 ORTHO05D009030 1.1e-84 317.4 250 61.2
Solyc11g008480.2 Solanum lycopersicum HOM05D007200 ORTHO05D009030 1.5e-84 317.0 268 59.7
Sopen11g004260 Solanum pennellii HOM05D007200 ORTHO05D009030 1.5e-84 317.0 248 62.9
ClCG02G015570 Citrullus lanatus HOM05D007200 ORTHO05D009030 2.5e-84 316.2 293 57.7
Nitab4.5_0009303g0010 Nicotiana tabacum HOM05D007200 ORTHO05D009030 1.2e-83 313.9 283 58.0
Cc02_g31060 Coffea canephora HOM05D007200 ORTHO05D009030 3.6e-83 312.4 279 60.6
Migut.O00553 Erythranthe guttata HOM05D007200 ORTHO05D009030 8.1e-83 311.2 271 59.8
Migut.N01991 Erythranthe guttata HOM05D007200 ORTHO05D009030 3.1e-82 309.3 286 57.0
FAN02G4393 Fragaria x ananassa HOM05D007200 ORTHO05D009030 4.4e-81 305.4 291 57.0
SGA_v2.0_scaffold98G29315 Striga asiatica HOM05D007200 ORTHO05D009030 1.7e-80 303.5 271 57.9
BcaC05g30126 Brassica carinata HOM05D007200 ORTHO05D009030 8.3e-80 301.2 247 61.1
PSO210G0998 Papaver somniferum HOM05D007200 ORTHO05D009030 5.4e-79 298.5 256 60.2
FAN05G3823 Fragaria x ananassa HOM05D000179 ORTHO05D009030 2.1e-78 296.6 225 66.2
ATR0706G032 Amborella trichopoda HOM05D007200 ORTHO05D009030 1.0e-77 294.3 263 56.3
PSO832G2855 Papaver somniferum HOM05D007200 ORTHO05D009030 1.0e-77 294.3 290 55.2
MSTRG.27987 Avicennia marina HOM05D007200 ORTHO05D009030 3.0e-77 292.7 286 55.2
CDE02G3507 Ceratophyllum demersum HOM05D007200 ORTHO05D009030 5.1e-77 292.0 287 54.7
unitig_746.g26859 Utricularia gibba HOM05D004477 ORTHO05D005615 6.6e-77 291.6 248 58.5
Potri.005G027100 Populus trichocarpa HOM05D007200 ORTHO05D009030 3.3e-76 289.3 225 67.6
CANSAT54G2778 Cannabis sativa HOM05D007200 ORTHO05D009030 9.5e-76 287.7 220 64.1
HPP92_006928 Vanilla planifolia HOM05D000065 ORTHO05D001606 5.1e-69 265.4 236 57.6
Os01g0934400 Oryza sativa ssp. japonica HOM05D007200 ORTHO05D009030 9.9e-57 224.6 174 60.9
Pp3c2_22000 Physcomitrium patens HOM05D007200 ORTHO05D009030 3.6e-51 206.1 277 45.8
AagrBONN_evm.TU.Sc2ySwM_228.2760 Anthoceros agrestis HOM05D007200 ORTHO05D009030 4.8e-51 205.7 271 45.4
Hund07085 Selenicereus undatus HOM05D007200 ORTHO05D009030 6.2e-51 205.3 174 60.9
AUR62004827 Chenopodium quinoa HOM05D007200 ORTHO05D009030 7.6e-49 198.4 179 55.9
SMO140G0101 Selaginella moellendorffii HOM05D007200 ORTHO05D009030 1.2e-46 191.0 244 43.4
Mapoly0092s0016 Marchantia polymorpha HOM05D007200 ORTHO05D009030 4.6e-46 189.1 252 42.9
Sc16g0008540 Simmondsia chinensis HOM05D007200 ORTHO05D009030 3.9e-45 186.0 169 59.2
SGA_v2.0_scaffold95G28806 Striga asiatica HOM05D007200 ORTHO05D009030 3.1e-42 176.4 170 57.1
CBR_g32304 Chara braunii HOM05D007200 ORTHO05D009030 2.6e-41 173.3 285 36.8
Cre09.g389578 Chlamydomonas reinhardtii HOM05D007200 ORTHO05D009030 4.3e-36 156.0 258 39.1
MCO07G015 Micromonas commoda HOM05D007200 ORTHO05D009030 4.2e-31 139.4 243 35.8
Oeu012109.1 Olea europaea HOM05D007200 ORTHO05D009030 7.2e-31 138.7 104 62.5
PRCOL_00003141 Prasinoderma coloniale HOM05D007200 ORTHO05D009030 1.2e-30 137.9 255 37.3
Actinidia19786 Actinidia chinensis HOM05D007200 ORTHO05D009030 9.7e-28 128.3 105 57.1
Os01g0934350 Oryza sativa ssp. japonica HOM05D007200 ORTHO05D009030 6.1e-22 109.0 75 64.0
C05p61820 Brassica napus HOM05D000205 ORTHO05D000438 3.9e-21 106.3 143 45.5
MD04G1202900 Malus domestica HOM05D007200 ORTHO05D009030 2.4e-18 97.1 116 50.9
CAN.G1228.6 Capsicum annuum HOM05D002933 ORTHO05D007742 3.5e-09 66.6 138 31.9
AUR62039657 Chenopodium quinoa HOM05D002933 ORTHO05D007742 1.3e-08 64.7 114 32.5
AUR62032114 Chenopodium quinoa HOM05D002933 ORTHO05D007742 2.2e-08 63.9 114 32.5
BcaC02g09745 Brassica carinata HOM05D002933 ORTHO05D007742 1.1e-07 61.6 140 31.4
BolC4t25275H Brassica oleracea HOM05D002933 ORTHO05D007742 1.1e-07 61.6 140 31.4
A04p04610 Brassica napus HOM05D002933 ORTHO05D007742 1.9e-07 60.8 140 31.4
BraA04t16171Z Brassica rapa HOM05D002933 ORTHO05D007742 1.9e-07 60.8 140 31.4
Carub.0005s2198 Capsella rubella HOM05D002933 ORTHO05D007742 1.9e-07 60.8 140 31.4
Thhalv10010685m.g Eutrema salsugineum HOM05D002933 ORTHO05D007742 2.5e-07 60.5 140 31.4
Solyc03g114930.3 Solanum lycopersicum HOM05D002933 ORTHO05D007742 2.5e-07 60.5 138 32.6
Sopen03g034010 Solanum pennellii HOM05D002933 ORTHO05D007742 2.5e-07 60.5 138 32.6
PGSC0003DMG400024531 Solanum tuberosum HOM05D002933 ORTHO05D007742 2.5e-07 60.5 138 31.9
BcaB02g08429 Brassica carinata HOM05D002933 ORTHO05D007742 3.2e-07 60.1 140 30.7
EL10Ac5g11164 Beta vulgaris HOM05D002933 ORTHO05D007742 4.2e-07 59.7 101 32.7
Hund02566 Selenicereus undatus HOM05D002933 ORTHO05D007742 5.5e-07 59.3 101 33.7
Ah.11g047550 Amaranthus hybridus HOM05D006809 ORTHO05D008609 1.6e-06 57.8 59 40.7
Migut.B00505 Erythranthe guttata HOM05D002933 ORTHO05D007742 2.7e-06 57.0 138 30.4


User provided reference genes

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