Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc48.66 Carica papaya HOM05D002009 ORTHO05D006817 4.0e-75 284.6 140 100.0
Cpa.g.sc48.67 Carica papaya HOM05D002009 ORTHO05D006831 1.8e-35 152.9 224 46.0
QL03p007353 Quercus lobata HOM05D002009 ORTHO05D006831 1.8e-19 99.8 83 67.5
QL03p007751 Quercus lobata HOM05D002009 ORTHO05D006831 1.8e-19 99.8 83 67.5
Ciclev10003639m.g Citrus clementina HOM05D002009 ORTHO05D006831 5.3e-19 98.2 83 61.4
COL.COLO4_13444 Corchorus olitorius HOM05D002009 ORTHO05D006831 6.9e-19 97.8 116 50.9
Eucgr.B01945 Eucalyptus grandis HOM05D002009 ORTHO05D006831 1.2e-18 97.1 85 60.0
Haze_04184 Corylus avellana HOM05D002009 ORTHO05D006831 1.5e-18 96.7 83 62.7
Gohir.A08G210100 Gossypium hirsutum HOM05D002009 ORTHO05D006831 2.0e-18 96.3 82 63.4
Prupe.6G324000 Prunus persica HOM05D002009 ORTHO05D006831 2.6e-18 95.9 85 62.4
Thecc.05G301300 Theobroma cacao HOM05D002009 ORTHO05D006831 2.6e-18 95.9 82 64.6
Gohir.D08G227001 Gossypium hirsutum HOM05D002009 ORTHO05D006831 3.4e-18 95.5 82 62.2
Gorai.004G241000 Gossypium raimondii HOM05D002009 ORTHO05D006831 3.4e-18 95.5 82 62.2
CiPaw.07G018700 Carya illinoinensis HOM05D002009 ORTHO05D006831 7.6e-18 94.4 84 63.1
GSVIVG01000087001 Vitis vinifera HOM05D002009 ORTHO05D006831 7.6e-18 94.4 91 59.3
TAR633G0909 Trochodendron aralioides HOM05D002009 ORTHO05D006831 1.0e-17 94.0 83 60.2
CANSAT54G3017 Cannabis sativa HOM05D002009 ORTHO05D006831 1.7e-17 93.2 84 60.7
Dinv40301 Davidia involucrata HOM05D002009 ORTHO05D006831 1.7e-17 93.2 91 52.7
Hma1.2p1_1077F.1_g254700 Hydrangea macrophylla HOM05D002009 ORTHO05D006831 2.9e-17 92.4 92 52.2
Atru.chr2.372 Acer truncatum HOM05D002009 ORTHO05D006831 4.9e-17 91.7 84 63.1
Oeu002661.1 Olea europaea HOM05D002009 ORTHO05D006831 1.4e-16 90.1 91 52.7
TWI36G1702 Tripterygium wilfordii HOM05D002009 ORTHO05D006831 1.9e-16 89.7 84 58.3
CSS0006817 Camellia sinensis var. sinensis HOM05D002009 ORTHO05D006831 2.5e-16 89.4 88 54.5
CSS0012384 Camellia sinensis var. sinensis HOM05D002009 ORTHO05D006831 2.5e-16 89.4 88 54.5
MD12G1217900 Malus domestica HOM05D002009 ORTHO05D006831 5.5e-16 88.2 84 59.5
Actinidia23644 Actinidia chinensis HOM05D002009 ORTHO05D006831 2.7e-15 85.9 107 48.6
FAN09G2733 Fragaria x ananassa HOM05D002009 ORTHO05D006831 1.8e-14 83.2 86 61.6
MD05G1053500 Malus domestica HOM05D005153 ORTHO05D006817 5.1e-14 81.6 82 58.5
TPR.G33207 Trifolium pratense HOM05D002009 ORTHO05D006831 5.1e-14 81.6 80 56.2
Potri.013G022200 Populus trichocarpa HOM05D002009 ORTHO05D006831 6.7e-14 81.3 83 57.8
Lj1g0026508 Lotus japonicus HOM05D002009 ORTHO05D006831 8.7e-14 80.9 85 54.1
Medtr7g113380 Medicago truncatula HOM05D002009 ORTHO05D006831 1.1e-13 80.5 83 54.2
Phvul.006G091300 Phaseolus vulgaris HOM05D002009 ORTHO05D006831 1.1e-13 80.5 73 60.3
Sed0001711 Sechium edule HOM05D002009 ORTHO05D006831 1.5e-13 80.1 84 53.6
MSTRG.27991 Avicennia marina HOM05D002009 ORTHO05D006831 1.9e-13 79.7 84 51.2
vmacro04986 Vaccinium macrocarpon HOM05D002009 ORTHO05D006831 1.9e-13 79.7 83 53.0
Sabra13G0024400 Salix brachista HOM05D002009 ORTHO05D006831 2.5e-13 79.3 83 55.4
Lju1040C0G1 Lonicera japonica HOM05D002009 ORTHO05D006831 3.3e-13 79.0 116 41.4
Ca_05812_v3 Cicer arietinum L. HOM05D002009 ORTHO05D006831 4.3e-13 78.6 80 55.0
FAN14G2713 Fragaria x ananassa HOM05D002009 ORTHO05D006831 4.3e-13 78.6 86 60.5
Lj9C89G5 Lonicera japonica HOM05D002009 ORTHO05D006831 4.3e-13 78.6 113 42.5
FvH4_6g06120 Fragaria vesca HOM05D002009 ORTHO05D006831 5.7e-13 78.2 84 60.7
arahy.Tifrunner.gnm1.ann1.V7WSHY Arachis hypogaea HOM05D002009 ORTHO05D006831 7.4e-13 77.8 84 51.2
Rhsim12G0060600 Rhododendron simsii HOM05D002009 ORTHO05D006831 1.3e-12 77.0 83 53.0
arahy.Tifrunner.gnm1.ann1.UY60S3 Arachis hypogaea HOM05D002009 ORTHO05D006831 1.6e-12 76.6 89 49.4
RcHm_v2.0_Chr3g0455131 Rosa chinensis HOM05D002009 ORTHO05D006831 2.1e-12 76.3 88 59.1
THA.LOC104823729 Tarenaya hassleriana HOM05D002009 ORTHO05D006831 2.1e-12 76.3 108 48.1
EL10Ac4g09369 Beta vulgaris HOM05D002009 ORTHO05D006831 2.8e-12 75.9 79 50.6
Cc02_g33310 Coffea canephora HOM05D002009 ORTHO05D006831 2.8e-12 75.9 79 50.6
CsaV3_2G006490 Cucumis sativus L. HOM05D002009 ORTHO05D006831 2.8e-12 75.9 85 54.1
MELO3C004237.2 Cucumis melo HOM05D002009 ORTHO05D006831 4.8e-12 75.1 85 54.1
Psat0s2197g0080 Pisum sativum HOM05D002009 ORTHO05D006831 6.3e-12 74.7 82 50.0
Glyma.03G237200 Glycine max HOM05D002009 ORTHO05D006831 8.2e-12 74.3 80 50.0
Sc09g0003130 Simmondsia chinensis HOM05D002009 ORTHO05D006831 8.2e-12 74.3 73 57.5
Manes.09G167800 Manihot esculenta HOM05D002009 ORTHO05D006831 1.1e-11 73.9 59 64.4
ClCG02G015610 Citrullus lanatus HOM05D002009 ORTHO05D006831 1.4e-11 73.6 86 52.3
Ah.04g160310 Amaranthus hybridus HOM05D002009 ORTHO05D006831 1.8e-11 73.2 84 51.2
CAN.G1034.31 Capsicum annuum HOM05D002009 ORTHO05D006831 1.8e-11 73.2 78 52.6
SGA_v2.0_scaffold80G25788 Striga asiatica HOM05D002009 ORTHO05D006831 3.1e-11 72.4 95 48.4
DCAR_001814 Daucus carota HOM05D002009 ORTHO05D006831 5.3e-11 71.6 85 49.4
Peaxi162Scf00037g00637 Petunia axillaris HOM05D002009 ORTHO05D006831 9.0e-11 70.9 74 50.0
Solyc01g099220.3 Solanum lycopersicum HOM05D002009 ORTHO05D006831 9.0e-11 70.9 90 46.7
Sopen01g042770 Solanum pennellii HOM05D002009 ORTHO05D006831 9.0e-11 70.9 90 46.7
PSO210G3028 Papaver somniferum HOM05D002009 ORTHO05D006831 1.2e-10 70.5 112 37.5
AUR62005157 Chenopodium quinoa HOM05D002009 ORTHO05D006831 2.0e-10 69.7 84 45.2
HanXRQChr15g0469941 Helianthus annuus HOM05D002009 ORTHO05D006831 2.6e-10 69.3 72 52.8
Nn3g21358 Nelumbo nucifera HOM05D002009 ORTHO05D006831 2.6e-10 69.3 88 44.3
Migut.N02062 Erythranthe guttata HOM05D002009 ORTHO05D006831 3.4e-10 68.9 83 45.8
ECA236G3568 Erigeron canadensis HOM05D002009 ORTHO05D006831 4.5e-10 68.6 116 38.8
ATR0706G256 Amborella trichopoda HOM05D002009 ORTHO05D006831 1.0e-09 67.4 81 51.9
AUR62000811 Chenopodium quinoa HOM05D002009 ORTHO05D006831 1.0e-09 67.4 84 45.2
AL2G26100 Arabidopsis lyrata HOM05D002009 ORTHO05D006831 2.2e-09 66.2 87 47.1
Migut.N02070 Erythranthe guttata HOM05D002009 ORTHO05D006831 3.8e-09 65.5 78 46.2
AT1G67500 Arabidopsis thaliana HOM05D002009 ORTHO05D006831 1.4e-08 63.5 86 45.3
PSO170G1195 Papaver somniferum HOM05D002009 ORTHO05D006831 1.4e-08 63.5 95 41.1
Lalb_Chr18g0045671 Lupinus albus HOM05D002009 ORTHO05D006831 1.9e-08 63.2 35 85.7
BcaB03g15362 Brassica carinata HOM05D002009 ORTHO05D006831 2.5e-08 62.8 80 42.5
Aqoxy2G03070 Aquilegia oxysepala HOM05D002009 ORTHO05D006831 3.2e-08 62.4 73 46.6
CARHR060080 Cardamine hirsuta HOM05D002009 ORTHO05D006831 4.2e-08 62.0 85 47.1
Hund07076 Selenicereus undatus HOM05D002009 ORTHO05D006831 7.2e-08 61.2 87 42.5
Aa31LG2G11690 Aethionema arabicum HOM05D000208 ORTHO05D006831 1.2e-07 60.5 94 44.7
Thhalv10017996m.g Eutrema salsugineum HOM05D002009 ORTHO05D006831 1.2e-07 60.5 85 45.9
Carub.0002s1383 Capsella rubella HOM05D002009 ORTHO05D006831 1.6e-07 60.1 86 48.8
SHI18137 Sapria himalayana HOM05D002009 ORTHO05D006831 1.6e-07 60.1 113 36.3
Sp5g22500 Schrenkiella parvula HOM05D002009 ORTHO05D006831 4.6e-07 58.5 85 45.9
A07p32520 Brassica napus HOM05D002009 ORTHO05D006831 1.8e-06 56.6 84 42.9
C06p38660 Brassica napus HOM05D002009 ORTHO05D006831 1.8e-06 56.6 84 42.9
BolC6t38955H Brassica oleracea HOM05D002009 ORTHO05D006831 1.8e-06 56.6 84 42.9


User provided reference genes

Program Settings